TCONS_00063044 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063044
Unique NameTCONS_00063044
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063044 ID=TCONS_00063044|Name=TCONS_00063044|organism=Clytia hemisphaerica|type=transcript|length=1436bp
AGGTCAGCGACTATGACGGAACTGTCTCAGGTATTTATCAATTGAATTCG
ATGCGTCAACACGCTGTGTCACCGTCTCCTGGTATTGAGGAGATAACAAA
GGCAATGCCCGGTGTACGGAAATGTTTATCTCCTGAATGTGGATGTTGTC
AACGGAGTGATGTATTGTTGAGAGTCAACGACGAGCTGTTACAACACAAA
CTTCAACTTGAGGAGCAGAATAGAAACCTGTTGGAGGAAATTCAAGTATC
GAGAAGATTTTATCAGGGAACATTGGCAGATTTGACTGCGCAACTTTCAA
TAGcGGAGAATCGAATCAAATATCTTCAAGAAGTGGTGAATACACAAGAA
GAAGCTCTCTCCTCTCTAAATAAGGACAAATCTCTTTCCTCGCCAAATAT
ATATCAAAATAACGGGACGAACGCTGGACATTTTACTCATCCAAACGGAA
ACGTCGGTGCAAATCGTCTTACCAAAAGTGTCCCAAACTCACCGCGCGGT
CTTCCACTATCGAACGATTCTAACCGCTCCACCACTTCATCAACGACGTC
TAGTGTGACGTCAGAACCTCCGCGTACTCGattgaatctgaaaaatatcg
tcAAATTTAAAGAGcaatTAATGGAGCGTAACCAGACATTGAAAACTGAC
ATTGAACtgttgaaattcaacaaaacagACGTCCCAAAGACTTCCTCTGT
CTCATCATTGAATAATAAAAAGGAATTACCCGCCATAAAGAGCAATCGGC
GCTCTGATGCCGGAGGCAAAGGCGGCTCAAATCAAACCACTCCCCAATCC
TCCTTTGACGCCAGTGAAGTTTCTTGTAAGAAATGAAGAGGGGTGATTCT
GCAAACTACCAACTTTGCGACCACTTTTCGTCTACTCTACAATAAGAATA
GGCAGAGCGAAAGATCGACCATCTTGGTAAAAAAGTGTAGTCCCTTGAAC
AGTTGAACAAAACTGCGTTTTTTGCATTGCTCTTCAATACCAGAgtaacc
agaagaaatttcttgcGATGACTGATGAACGAGGTCACATTTTCAATGGT
AATTTATTTCGAAAACCTTTTGGTAATGTATTTAATTGAACGCCAAAAAA
CTCACAGAGATTGCCCAAAATaaggtgaaattttttccacaGTTCAGTTT
CACCGTGAATGAGTTATTGAATACAAATGAACGAGGGATAAACGGCTATT
GCTAGTCAACTAGTAGATAAACacaatttccaattttttacaagcacact
ttaaactttctttaatatttttttagactatgataatttttttataataa
tattttgacaaaagtaATATTATGCATGCACTCTGTACATATATTTTGTA
AATACCCATAAAAAGAATATCTAACCAGCAATGACCAAAGATAattaatc
atgataaaataacTTGTCCTTAAAGGTTTTATGTTT
Run BLAST on NCBI

transcript from alignment at scaffold_378:2024..5595+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063044 ID=TCONS_00063044|Name=TCONS_00063044|organism=Clytia hemisphaerica|type=transcript|length=3572bp|location=Sequence derived from alignment at scaffold_378:2024..5595+ (Clytia hemisphaerica)
AGGTCAGCGACTATGACGGAACTGTCTCAGGTATTTATCAATTGAATTCG
ATGCGTCAACACGCTGTGTCACCGTCTCCTGGTATTGAGGAGATAACAAA
GGCAATGCCCGGTGTACGGAAATGTTTATCTCCTGAATGTGGATGTTGTC
AACGGAGTGATGTATTGTTGAGAGTCAACGACGAGCTGTTACAACACAAA
CTTCAACTTGAGGAGCAGAATAGAAACCTGTTGGAGGAAATTCAAGTATC
GAGAAGATTTTATCAGGGAACATTGGCAGATTTGACTGCGCAACTTTCAA
TAGGTAACGGGTTTcccgttttttataagcaaatgtctacccctatatca
ggctcgcattatgcttagcattctattgttcttaaaaaatagaGCTactg
tttaggtaccaaaaatgagcctgcatatgcttataaacgttgtACTAAAA
ACATTTACCTCTCCATGCTTAGGATCCTACTTCTNtgcatatgcttataa
acgttgtACTAAAAACATTTACCTCTCCATGCTTAGGATCCTACTTCTAA
TATTTGTTTTCCTATCAGAGGAATTTTAACTTCAACTTTTTCTAGACAAG
TAGGCGACCGACAGAGGGCCATTTAAAACGGTCGTATCTCGACatgaaat
tttctaattttaaagGTGTTTCTAACTTTTATAATttaacataaattttt
tttacagcGGAGAATCGAATCAAATATCTTCAAGAAGTGGTGAATACACA
AGAAGAAGCTCTCTCCTCTCTAAATAAGGTATGAAGAAGGAGTTTGTCGT
GTAAGATTTCATCTGCTAACTCTAGAGAGTTTGTGCTTTTGATAGCAACT
TTTACAGTTAGCCAATAATATTAAggccatgttcgcacgtgacggttcaT
TCAAGAAGTCTTTTCTAACCAATTGAATGGCTTCATTCCGTTTCGAGCGA
AACTGAACCGTCACGTGCGAGCATGTTCGATAAAAAATAAGCATACCTAA
AaactgaaatgcaaaaaaaattcgtgcagcttttctaaaacgctgactTT
TTTCagggttacttttaaagctgtttgagctttcttagaccaaagatttt
tacctgcggcgccaaattacaaagaaaactttcattcttTGTACCGGATC
AATCTTCCAACTTAAAAATTCGAGATTTGCATGAACCCAAAAAAATCAAC
AAgtctaagcatataaataatgataatttaaggctgaaaatgagattttg
ctaagcatattgagCCTCAACCCGATTTTCCCgcttatgcttataaaaaa
aagagtgtatctGGTTGTTAAATTAATATTCCTTCGGCTTAATTTCATAG
GACAAATCTCTTTCCTCGCCAAATATATATCAAAATAACGGGACGAACGC
TGGACATTTTACTCATCCAAACGGAAACGTCGGTGCAAATCGTCTTACCA
AAAGTGTCCCAAACTCACCGCGCGGTCTTCCACTATCGAACGATTCTAAC
CGCTCCACCACTTCATCAACGACGTCTAGTGTGACGTCAGAACCTCCGCG
TACTCGattgaatctgaaaaatatcgtcAAATTTAAAGAGGTTTGGTCAA
AAATTAGAATCACTAACTAACCGTCACTTTATCCTTTTTTCattcggggg
ggggggctgagaGTTACAAGGGTTGGAGAATGTTACGCTTTGAGGGACTT
TAGATAGTAATTTCGTTGGAATTACGAAAGAATTTTGTGTCCTTTTTGAT
GAGTGATAGTTTTTGCACCCATAGAAAGACTTCAGAAGGCGAGAAAAAAA
CCCGCTTCTTTTTGCACTTGCTACAAACTCTTTAGCTTTAAAAACCCTCT
caatctagaaaaaaatcaaatagaaTCAACAACAAGCGACAGTTCTTCTG
CATCCTTAACTATATTTCTtattcgtgttttttttttcagcaatTAATGG
AGCGTAACCAGACATTGAAAACTGACATTGAACtgttgaaattcaacaaa
acagACGTCCCAAAGACTTCCTCTGTCTCATCATTGAATAATAAAAAGGT
ATGAAGAATTTCATCCTCGATATAGTTAGAGTTTTCAATCATAAATTATC
GCTCCAAAGTTGGTCGTCTTTTTTTTCATCAGCAACTGTTAAATTCCATG
ATCTTTTTGTACAATATGCcttaaagaaacttttttttgagaaCTAGCTA
ACGAATTAAtgtgattttttgtttaaataaaACACTcatttgtagacaaa
aaatcaatttaccATCAAAAAGGAGCTCACATTGGCTCATTTctattttc
gttcttttttagGAATTACCCGCCATAAAGAGCAATCGGCGCTCTGATGC
CGGAGGCAAAGGCGGCTCAAATCAAACCACTCCCCAATCCTCCTTTGACG
CCAGTGAAGTTTCTTGTAAGAAATGAAGAGGGGTGATTCTGGTAAGCTTT
TGAATGAGGAGATAAAGTGGATTTAGGTTGATTTAGGTTCACAGTATTGA
ACTTAGCAGACATTCTTCAACAACACGTGACACGTGACTTGAAGGTGAGA
AAAAGTGTCGAGGACAAAAACATTTGCATTTgtatcatgcaaaatattga
TGTCCTTttctttggtaaaaaaaaactatttctgCAAAGTGTACAATGAT
TGATTTAAAACTTTTACCATACATTATTGGCATTAGAAATCTGACAAAAC
TGCCAGACAAGACTGTTCCTTGTTCTGTTACATTTGTCAAGTGTCAAGTT
GCCAGTTTTGGTTGTTCATGGACCAGCAAGGTTCAGTTCTTTTAGACACG
TGTGATTCACGGGCATATTTGTTATTGAGAAATATTTGCAATAATAATTT
GAATAGagtttagctctagtttagatggcctacttttcgccctgcctatt
ctaattgtgagaTAAAGTGAGCAGAtagttggctgtctaaagtcataGAT
TACCCTCTATTGAcgtcttctttcaatcttttccgaGCAAACTACCAACT
TTGCGACCACTTTTCGTCTACTCTACAATAAGAATAGGCAGAGCGAAAGA
TCGACCATCTTGGTAAAAAAGTGTAGTCCCTTGAACAGTTGAACAAAACT
GCGTTTTTTGCATTGCTCTTCAATACCAGAgtaaccagaagaaatttctt
gcGATGACTGATGAACGAGGTCACATTTTCAATGGTAATTTATTTCGAAA
ACCTTTTGGTAATGTATTTAATTGAACGCCAAAAAACTCACAGAGATTGC
CCAAAATaaggtgaaattttttccacaGTTCAGTTTCACCGTGAATGAGT
TATTGAATACAAATGAACGAGGGATAAACGGCTATTGCTAGTCAACTAGT
AGATAAACacaatttccaattttttacaagcacactttaaactttcttta
atatttttttagactatgataatttttttataataatattttgacaaaag
taATATTATGCATGCACTCTGTACATATATTTTGTAAATACCCATAAAAA
GAATATCTAACCAGCAATGACCAAAGATAattaatcatgataaaataacT
TGTCCTTAAAGGTTTTATGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039492XLOC_039492Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063044-exon-scaffold_378-1491911889:2024..2326TCONS_00063044-exon-scaffold_378-1491911889:2024..2326Clytia hemisphaericaexon
TCONS_00063044-exon-scaffold_378-1510915933:2024..2326TCONS_00063044-exon-scaffold_378-1510915933:2024..2326Clytia hemisphaericaexon
TCONS_00063044-exon-scaffold_378-1575043694:2024..2326TCONS_00063044-exon-scaffold_378-1575043694:2024..2326Clytia hemisphaericaexon
TCONS_00063044-exon-scaffold_378-1491911889:2731..2801TCONS_00063044-exon-scaffold_378-1491911889:2731..2801Clytia hemisphaericaexon
TCONS_00063044-exon-scaffold_378-1510915933:2731..2801TCONS_00063044-exon-scaffold_378-1510915933:2731..2801Clytia hemisphaericaexon
TCONS_00063044-exon-scaffold_378-1575043694:2731..2801TCONS_00063044-exon-scaffold_378-1575043694:2731..2801Clytia hemisphaericaexon
TCONS_00063044-exon-scaffold_378-1491911889:3374..3613TCONS_00063044-exon-scaffold_378-1491911889:3374..3613Clytia hemisphaericaexon
TCONS_00063044-exon-scaffold_378-1510915933:3374..3613TCONS_00063044-exon-scaffold_378-1510915933:3374..3613Clytia hemisphaericaexon
TCONS_00063044-exon-scaffold_378-1575043694:3374..3613TCONS_00063044-exon-scaffold_378-1575043694:3374..3613Clytia hemisphaericaexon
TCONS_00063044-exon-scaffold_378-1491911889:3964..4071TCONS_00063044-exon-scaffold_378-1491911889:3964..4071Clytia hemisphaericaexon
TCONS_00063044-exon-scaffold_378-1510915933:3964..4071TCONS_00063044-exon-scaffold_378-1510915933:3964..4071Clytia hemisphaericaexon
TCONS_00063044-exon-scaffold_378-1575043694:3964..4071TCONS_00063044-exon-scaffold_378-1575043694:3964..4071Clytia hemisphaericaexon
TCONS_00063044-exon-scaffold_378-1491911889:4336..4464TCONS_00063044-exon-scaffold_378-1491911889:4336..4464Clytia hemisphaericaexon
TCONS_00063044-exon-scaffold_378-1510915933:4336..4464TCONS_00063044-exon-scaffold_378-1510915933:4336..4464Clytia hemisphaericaexon
TCONS_00063044-exon-scaffold_378-1575043694:4336..4464TCONS_00063044-exon-scaffold_378-1575043694:4336..4464Clytia hemisphaericaexon
TCONS_00063044-exon-scaffold_378-1491911889:5011..5595TCONS_00063044-exon-scaffold_378-1491911889:5011..5595Clytia hemisphaericaexon
TCONS_00063044-exon-scaffold_378-1510915933:5011..5595TCONS_00063044-exon-scaffold_378-1510915933:5011..5595Clytia hemisphaericaexon
TCONS_00063044-exon-scaffold_378-1575043694:5011..5595TCONS_00063044-exon-scaffold_378-1575043694:5011..5595Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_378supercontigscaffold_378:2024..5595 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.000131106	0.435936	0	0	0	0	0	0	0	0	0.545414	0	0	0	0	0	3.09912e-09	4.35912e-09	0	0	0	8.90798e-08	0	0	0.570936	0.0401952	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063044 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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