TCONS_00063033 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063033
Unique NameTCONS_00063033
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length678

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063033 ID=TCONS_00063033|Name=TCONS_00063033|organism=Clytia hemisphaerica|type=transcript|length=678bp
tgtaaaattcacaaaattttccaatttttccttctatttagtcccgctaa
gggtcgggcggcacatacccgtcagctaCCTAGTGGCCTGGTAATAATTC
TCTTCAGTCTGGGaatttttcgtcactttctttttaatttgttgTCATAC
CAACCAAGATTATGTTTAAGATTTTAGTGTTTATCTAATTTCagcaacaa
agaaaataaataatgtCAGAAGAAAACGCAAATTTAACACAGGAGTTATC
ACATCACAACGAGCCTGCTATTTCAGCAAGGGAACCTCCTCAAAAGCAAT
CAATCCCTCAGGGAATCTCTACCAACAATCAATCACAGGAATCACTTCAG
GAATCATCAACTGGTCAAGGTATCATCTCTACAAATTATCCAGTAATTAC
AAACATATCTCAAATCAATCGAAGCCGTGTAACTAACACAGACGTCGTGG
AGATTGAAGTTCCGAGTAGTAACGAAACTGTTCAAATCAAATCGTACACA
TCGCTCAATAGTCTTCCAGGGGCGTCCTACAGACCAACTCCTTCCAGTCA
GTTTTCGACAATTGCTGAAACagatcaacatcaaaacatgcCGAACCTTG
AGCATTCATCCTCGATACATTGCAACATGAATGAGAAGTCTAGAAGACCA
ACCACGTTACCTCAAACCTCTGTGTAAG
Run BLAST on NCBI

protein sequence of TCONS_00063033-protein

>TCONS_00063033-protein ID=TCONS_00063033-protein|Name=TCONS_00063033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MSEENANLTQELSHHNEPAISAREPPQKQSIPQGISTNNQSQESLQESST
GQGIISTNYPVITNISQINRSRVTNTDVVEIEVPSSNETVQIKSYTSLNS
LPGASYRPTPSSQFSTIAETDQHQNMPNLEHSSSIHCNMNEKSRRPTTLP
QTSV
Run BLAST on NCBI

transcript from alignment at scaffold_377:928..1657-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063033 ID=TCONS_00063033|Name=TCONS_00063033|organism=Clytia hemisphaerica|type=transcript|length=730bp|location=Sequence derived from alignment at scaffold_377:928..1657- (Clytia hemisphaerica)
TGTAAAATTCACAAAATTTTCCAATTTTTCCTTCTATTTAGTCCCGCTAA
GGGTCGGGCGGCACATACCCGTCAGCTACCTAGTGGCCTGGTAATAATTC
TCTTCAGTCTGGGAATTTTTCGTCACTTTCTTTTTAATTTGTTGTCATAC
CAACCAAGATTATGTTTAAGATTTTAGTGTTTATCTAATTTCAGCAACAA
AGAAAATAAATAATGTCAGAAGAAAACGCAAATTTAACACAGGAGTTATC
ACATCACAACGAGCCTGCTATTTCAGCAAGGGAACCTCCTCAAAAGCAAT
CAATCCCTCAGGGAATCTCTACCAACAATCAATCACAGGAATCACTTCAG
GAATCATCAACTGGTCAAGGTATCATCTCTACAAATTATCCAGTAATTAC
AAACATATCTCAAATCAATCGAAGCCGTGTAACTAACACAGACGTCGTGG
AGATTGAAGTTCCGAGTAGTAACGAAACTGTTCAAATCAAATCGTACACA
TCGCTCAATAGTCTTCCAGGGGCGTCCTACAGACCAACTCCTTCCAGTCA
GTTTTCGACAATTGCTGAAACAGATCAACATCAAAACATGCCGAANCAGT
CAGTTTTCGACAATTGCTGAAACAGATCAACATCAAAACATGCCGAACCT
TGAGCATTCATCCTCGATACATTGCAACATGAATGAGAAGTCTAGAAGAC
CAACCACGTTACCTCAAACCTCTGTGTAAG

Coding sequence (CDS) from alignment at scaffold_377:928..1657-

>TCONS_00063033 ID=TCONS_00063033|Name=TCONS_00063033|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_377:928..1657- (Clytia hemisphaerica)
ATGCCGAACCTTGAGCATTCATCCTCGATACATTGCAACATGAATGAGAA
GTCTAGAAGACCAACCACGTTACCTCAAACCTCTGTGTAAATGTCAGAAG
AAAACGCAAATTTAACACAGGAGTTATCACATCACAACGAGCCTGCTATT
TCAGCAAGGGAACCTCCTCAAAAGCAATCAATCCCTCAGGGAATCTCTAC
CAACAATCAATCACAGGAATCACTTCAGGAATCATCAACTGGTCAAGGTA
TCATCTCTACAAATTATCCAGTAATTACAAACATATCTCAAATCAATCGA
AGCCGTGTAACTAACACAGACGTCGTGGAGATTGAAGTTCCGAGTAGTAA
CGAAACTGTTCAAATCAAATCGTACACATCGCTCAATAGTCTTCCAGGGG
CGTCCTACAGACCAACTCCTTCCAGTCAGTTTTCGACAATTGCTGAAACA
GATCAACATCAAAACATGCCGAACCTTGAGCATTCATCCTCGATACATTG
CAACATGAATGAGAAGTCTAGAAGACCAACCACGTTACCTCAAACCTCTG
TGTAAATGTCAGAAGAAAACGCAAATTTAACACAGGAGTTATCACATCAC
AACGAGCCTGCTATTTCAGCAAGGGAACCTCCTCAAAAGCAATCAATCCC
TCAGGGAATCTCTACCAACAATCAATCACAGGAATCACTTCAGGAATCAT
CAACTGGTCAAGGTATCATCTCTACAAATTATCCAGTAATTACAAACATA
TCTCAAATCAATCGAAGCCGTGTAACTAACACAGACGTCGTGGAGATTGA
AGTTCCGAGTAGTAACGAAACTGTTCAAATCAAATCGTACACATCGCTCA
ATAGTCTTCCAGGGGCGTCCTACAGACCAACTCCTTCCAGTCAGTTTTCG
ACAATTGCTGAAACAGATCAACATCAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039486XLOC_039486Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063033-proteinTCONS_00063033-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063033-exon-scaffold_377-1575043694:1071..1657TCONS_00063033-exon-scaffold_377-1575043694:1071..1657Clytia hemisphaericaexon
TCONS_00063033-exon-scaffold_377-1575043694:928..1018TCONS_00063033-exon-scaffold_377-1575043694:928..1018Clytia hemisphaericaexon
TCONS_00063033-exon-scaffold_377-1510915933:1071..1657TCONS_00063033-exon-scaffold_377-1510915933:1071..1657Clytia hemisphaericaexon
TCONS_00063033-exon-scaffold_377-1510915933:928..1018TCONS_00063033-exon-scaffold_377-1510915933:928..1018Clytia hemisphaericaexon
TCONS_00063033-exon-scaffold_377-1491911889:1071..1657TCONS_00063033-exon-scaffold_377-1491911889:1071..1657Clytia hemisphaericaexon
TCONS_00063033-exon-scaffold_377-1491911889:928..1018TCONS_00063033-exon-scaffold_377-1491911889:928..1018Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_377supercontigscaffold_377:928..1657 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.44874	0.647659	0.905508	0.754154	16.019	15.7918	8.48779	11.0665	2.6211	3.81798	2.03443	2.22999	2.54119	1.78426	3.061	3.07512	2.88312	2.52137	0.749672	0.926789	0.982409	1.63308	2.16194	3.94177	5.25858	6.18337	1.18413	0.85624	2.14487	1.69546
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063033 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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