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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00063029 ID=TCONS_00063029|Name=TCONS_00063029|organism=Clytia hemisphaerica|type=transcript|length=1664bp
GTATTTCTTGTGAGAAGTATGTAaatgatttcttattttttcaaggaaaa
tgaactACAATATTTTCTTGTTTATGGAATGGAATTTAAACACTATCCTg
tattttacaagcaaaattaTGTatgtcttgtatttttcaaattagctggc
agtgttttttcaaacgtccataacttttgatagaattcgaattaagtagc
gattttgtgctcgttgaaaaacaaacaggagtgggatattgtcataaaga
aaaaactcaaaaacatcggaaaatgaagaagaagaaaatcaacttcttta
aTAATTGTGCAGAATTGTGcaataattatcattttcacacgagtgattct
ttgatcttagaacatcattaatgcgaaaaaaaattattccatcgaaagat
atagtccaaagtttatcaatgattgacttcaaaaaccatcaaaaaacaat
aaaaaagagcccttttttaagtcaaccagggcaaagttttagggtgtatt
ttttgattgaatgaatatttttaaattttttttctcgcatttatgacgtc
ataagattgaagaattcttgatacaaaaatgaagatcatagcattattct
acaTTGATCATCTTCGTTtatattcattttttaattttttttcttttttg
ataatattccactccggattatcttttcaacgagcacaaaatcgctacta
aattcaaattctatcaaaagttattaaggtttgaaaaaacattgccagct
aatttgaaatagacttttttagtttttcaacAAACTTGTATGCCCTTTGT
GGTGCACTCTGTAAGTGAATAACATTGCTCAAAATAACTTGTTTATAATA
ATACTCTCAAGATTTGCCACTTGAAGTTTTTATTCAATGCAGTTTGTCAA
ATCAGTTCAGAAAAATTCATCTTCGGAATCTTCAATATTTCCTCCATAAT
GCTGGTAATGTAAAGGCTAAATCCTGTCTTTTCTGTCTTTCCTTTCATGC
GCCACTGTCTCATTCCCAGCTTGATTTTGTACTGCATATCTTGTCTCAAT
TTCTTCTTGGCATAATCTTGACTTTCAATAGAATTTCCGAATGGAGGGAG
AACTGTTTCCCAATTTCGGCCTGCTTGATACACAGGaacaaaatttaaga
atcgttTGAATTTGTCCTTGTGTTTGACCAAGACATTGTTTCCATCAATT
TGAaatctcatttttctttttccagcaAGATTGTTAGCTATTCCTTTGTA
TGTTCCATTCAGCCCATGTTCTACCAACCGTAATGCTACTTTTAGAACTT
CTTGTAGCTcttcttcaaaagttttgatgcATTTACTGCCAACAAACTCC
TCAATTTTGGGGTCGTGAAGATTCTGTATATTATAACAGATACCTGATGC
CTTTTTTACCACAAGGACATTCATGGTCACATTCACCGGTATCATCCGAT
CTTACGAATGACCATCTTTTGGCAATATCCAAGTTGGTCCAATGCTCTTT
CTCTCTTTTAGAAGTTGGATCTCGATCTTACAAAAATTTCATAAGCTTAT
CTGGATATTTTCCTGCACTCCCTCCTTCCGCCATGTTGACAACAAGAGAA
ATCTTTCATATATAGCTTCGTAGCATAAGTTATTTGAAATGACATGAAAT
TTCCTGGAAAAAAG Run BLAST on NCBI protein sequence of TCONS_00063029-protein >TCONS_00063029-protein ID=TCONS_00063029-protein|Name=TCONS_00063029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MIPVNVTMNVLVVKKASGICYNIQNLHDPKIEEFVGSKCIKTFEEELQEV
LKVALRLVEHGLNGTYKGIANNLAGKRKMRFQIDGNNVLVKHKDKFKRFL
NFVPVYQAGRNWETVLPPFGNSIESQDYAKKKLRQDMQYKIKLGMRQWRM
KGKTEKTGFSLYITSIMEEILKIPKMNFSELI Run BLAST on NCBI transcript from alignment at scaffold_376:17436..19099 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00063029 ID=TCONS_00063029|Name=TCONS_00063029|organism=Clytia hemisphaerica|type=transcript|length=1664bp|location=Sequence derived from alignment at scaffold_376:17436..19099 (Clytia hemisphaerica)
CTTTTTTCCAGGAAATTTCATGTCATTTCAAATAACTTATGCTACGAAGC
TATATATGAAAGATTTCTCTTGTTGTCAACATGGCGGAAGGAGGGAGTGC
AGGAAAATATCCAGATAAGCTTATGAAATTTTTGTAAGATCGAGATCCAA
CTTCTAAAAGAGAGAAAGAGCATTGGACCAACTTGGATATTGCCAAAAGA
TGGTCATTCGTAAGATCGGATGATACCGGTGAATGTGACCATGAATGTCC
TTGTGGTAAAAAAGGCATCAGGTATCTGTTATAATATACAGAATCTTCAC
GACCCCAAAATTGAGGAGTTTGTTGGCAGTAAATgcatcaaaacttttga
agaagAGCTACAAGAAGTTCTAAAAGTAGCATTACGGTTGGTAGAACATG
GGCTGAATGGAACATACAAAGGAATAGCTAACAATCTtgctggaaaaaga
aaaatgagattTCAAATTGATGGAAACAATGTCTTGGTCAAACACAAGGA
CAAATTCAaacgattcttaaattttgttCCTGTGTATCAAGCAGGCCGAA
ATTGGGAAACAGTTCTCCCTCCATTCGGAAATTCTATTGAAAGTCAAGAT
TATGCCAAGAAGAAATTGAGACAAGATATGCAGTACAAAATCAAGCTGGG
AATGAGACAGTGGCGCATGAAAGGAAAGACAGAAAAGACAGGATTTAGCC
TTTACATTACCAGCATTATGGAGGAAATATTGAAGATTCCGAAGATGAAT
TTTTCTGAACTGATTTGACAAACTGCATTGAATAAAAACTTCAAGTGGCA
AATCTTGAGAGTATTATTATAAACAAGTTATTTTGAGCAATGTTATTCAC
TTACAGAGTGCACCACAAAGGGCATACAAGTTTgttgaaaaactaaaaaa
gtctatttcaaattagctggcaatgttttttcaaaccttaataacttttg
atagaatttgaatttagtagcgattttgtgctcgttgaaaagataatccg
gagtggaatattatcaaaaaagaaaaaaaattaaaaaatgaatataAACG
AAGATGATCAAtgtagaataatgctatgatcttcatttttgtatcaagaa
ttcttcaatcttatgacgtcataaatgcgagaaaaaaaatttaaaaatat
tcattcaatcaaaaaatacaccctaaaactttgccctggttgacttaaaa
aagggctcttttttattgttttttgatggtttttgaagtcaatcattgat
aaactttggactatatctttcgatggaataattttttttcgcattaatga
tgttctaagatcaaagaatcactcgtgtgaaaatgataattattgCACAA
TTCTGCACAATTAttaaagaagttgattttcttcttcttcattttccgat
gtttttgagttttttctttatgacaatatcccactcctgtttgtttttca
acgagcacaaaatcgctacttaattcgaattctatcaaaagttatggacg
tttgaaaaaacactgccagctaatttgaaaaatacaagacatACAtaatt
ttgcttgtaaaatacAGGATAGTGTTTAAATTCCATTCCATAAACAAGAA
AATATTGTagttcattttccttgaaaaaataagaaatcattTACATACTT
CTCACAAGAAATAC Coding sequence (CDS) from alignment at scaffold_376:17436..19099 >TCONS_00063029 ID=TCONS_00063029|Name=TCONS_00063029|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at scaffold_376:17436..19099 (Clytia hemisphaerica)
ATGATACCGGTGAATGTGACCATGAATGTCCTTGTGGTAAAAAAGGCATC
AGGTATCTGTTATAATATACAGAATCTTCACGACCCCAAAATTGAGGAGT
TTGTTGGCAGTAAATgcatcaaaacttttgaagaagAGCTACAAGAAGTT
CTAAAAGTAGCATTACGGTTGGTAGAACATGGGCTGAATGGAACATACAA
AGGAATAGCTAACAATCTtgctggaaaaagaaaaatgagattTCAAATTG
ATGGAAACAATGTCTTGGTCAAACACAAGGACAAATTCAaacgattctta
aattttgttCCTGTGTATCAAGCAGGCCGAAATTGGGAAACAGTTCTCCC
TCCATTCGGAAATTCTATTGAAAGTCAAGATTATGCCAAGAAGAAATTGA
GACAAGATATGCAGTACAAAATCAAGCTGGGAATGAGACAGTGGCGCATG
AAAGGAAAGACAGAAAAGACAGGATTTAGCCTTTACATTACCAGCATTAT
GGAGGAAATATTGAAGATTCCGAAGATGAATTTTTCTGAACTGATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00063029-exon-scaffold_376-1491911889:17436..19099 | TCONS_00063029-exon-scaffold_376-1491911889:17436..19099 | Clytia hemisphaerica | exon |
| TCONS_00063029-exon-scaffold_376-1510915933:17436..19099 | TCONS_00063029-exon-scaffold_376-1510915933:17436..19099 | Clytia hemisphaerica | exon |
| TCONS_00063029-exon-scaffold_376-1575043694:17436..19099 | TCONS_00063029-exon-scaffold_376-1575043694:17436..19099 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_376 | supercontig | scaffold_376:17436..19099 . |
Blast
The following BLAST results are available for this feature:
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