TCONS_00063017 (transcript) - C. hemisphaerica

Overview
NameTCONS_00063017
Unique NameTCONS_00063017
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length374

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00063017 ID=TCONS_00063017|Name=TCONS_00063017|organism=Clytia hemisphaerica|type=transcript|length=374bp
CTGTacacttgtaaattttttaatcataaagGGCCCATAAagacttgatt
aaaaaatttcagaaatttagaaataagttaatgtaatgtaatgtaaccaC
GCCTTTAGGTAATTAAGCCTACATCACAAGCTGTTTCTTGCACCATTTCT
GCAACTTTCAagcaaatatttggaaaattgttTCCATTATACTGTTTAGG
TATCAAAGCTTctttcagttaggaacatttggcaagTTCCTGTCAAGTCA
AGATCTAGAGTGCACAACTCGGATAAAGTCGAGTgcaggtgcaaaatttg
agcttttCAGGTACAAGTGCAGACGGTTTTTTAACCTCAAGTAAAGAGTT
CAGCTATTTTTTCCTCAAGTGCAG
Run BLAST on NCBI

transcript from alignment at scaffold_375:409618..409991

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00063017 ID=TCONS_00063017|Name=TCONS_00063017|organism=Clytia hemisphaerica|type=transcript|length=374bp|location=Sequence derived from alignment at scaffold_375:409618..409991 (Clytia hemisphaerica)
CTGCACTTGAGGAAAAAATAGCTGAACTCTTTACTTGAGGTTAAAAAACC
GTCTGCACTTGTACCTGaaaagctcaaattttgcacctgcACTCGACTTT
ATCCGAGTTGTGCACTCTAGATCTTGACTTGACAGGAActtgccaaatgt
tcctaactgaaagAAGCTTTGATACCTAAACAGTATAATGGAaacaattt
tccaaatatttgctTGAAAGTTGCAGAAATGGTGCAAGAAACAGCTTGTG
ATGTAGGCTTAATTACCTAAAGGCGtggttacattacattacattaactt
atttctaaatttctgaaattttttaatcaagtctTTATGGGCCctttatg
attaaaaaatttacaagtgtACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039477XLOC_039477Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00063017-exon-scaffold_375-1491911889:409618..409991TCONS_00063017-exon-scaffold_375-1491911889:409618..409991Clytia hemisphaericaexon
TCONS_00063017-exon-scaffold_375-1510915933:409618..409991TCONS_00063017-exon-scaffold_375-1510915933:409618..409991Clytia hemisphaericaexon
TCONS_00063017-exon-scaffold_375-1575043694:409618..409991TCONS_00063017-exon-scaffold_375-1575043694:409618..409991Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:409618..409991 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.860066	0	0	2.38181	0.289962	0.458264	0	0.258798	0.18119	0	0	0	0	0	0.366281	0	0.161412	0	0	0	0	0	0	0.224135	0.230854	0.206032	0	0	0.238652	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00063017 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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