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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062999 ID=TCONS_00062999|Name=TCONS_00062999|organism=Clytia hemisphaerica|type=transcript|length=1726bp
TAGCATCTAACATATCTTGAGTAGGGAGAGAAAAAAACAAGTATTATGCT
TGCTTTAATTCTCTGTAAAGGGTCAACTCGTTCAAATAGAGGGTAAAACG
TTAATGTTGGCGTCGTGGAGCtcgtatttttttgtttttcaaggtTTATT
CATGACAGAGTTTGTTTGATCAGGCTGTAAAAAATGTAAAGGAAcaaatt
tgttgaattttgaataattgtagaaaattttgttagaataaatgtttttt
tgtgttttttttgcaGGTCTGTGTGCAATGTAACTTGGCTTTGTAGAATC
GATGATTTTTAATGTTTGGttctttttagtgaaaatttaaaGAACAAAAA
TGAAGGCACGAGCAATGTCGGCTCATTTGGAATGTTGTGATGAAACaaat
actaaaataaaaaccagaATGAAAGAAGAAGATCCAATTTACGAAAATAT
CGCTCGATTCGATAACGTACAAATAATCGATCCACGAATTATTCGAATAA
TTAAAAGAGTTCACGATACACCTGATAAAATACGACAAGAAACCGATCGA
TTCGTACAATTCAtcgatgaattgaaaaaatcgTATATACAAAGTATCGT
TAAACGTACGAATGCTGAACGACGATTTAACGAAGCTGTTACGAGATACG
AAGGTTACGAGCGTGAGTTACGAGGCTATCAACAAGAACAATGTCTAATT
CAATTTAAAGATGATACCATACTTGCTCAACAGAACTTAGAAAAAAGTCA
TGTTGAATTGGTACTGGCTCGTAATATACTCGAATCAACGGAGCGTGAGC
TATTAGTCCACAAAGAACAATTATGTCTTTTGAGTAAGAAAGCTGAACAC
tcttttatctactttttgagaaaatttgctGACAGGTACTGGACAGATAT
GTATATGACGGAATTAAATGACTGTGACGTAGCCCCTTTACCACCGCCAC
ATTTTGAATTCCCAACCGAACTAACACATGATGATATAACTACAACCACA
GATAGTCCACCGTCTACAGATTGCGTCATCGATGATGCCACgactgatga
cgtcagcagtagTGAACGTCGGACTTCTGATGAGGGTTTTGAATGGGATG
CAACTTTTGACGAACATTTTCAAAACTCTTTCCAACAGCCTCCTCGAATG
CTTCCAATGCGTTACACAAAACACGATACCTCAAGTGACGGAGAAATTTC
CGACGAATCCGATTACGAAGACGATTATCCCAATCGGGAAAACGGAAAAT
ATGAATCTGAAAACTTTTACGATCGATTCGCCGATGACGATGATGAAGAA
CGGGTTAATGAGAAAGCTAAACTTTATACACCAGAACCACTCTATGAAGA
CTTATTTATTTACAGACGACGCTGTGCGCTTATGCAGCGGATCAAACCTT
CACGTCTAATGAAATATTTAAGAACATTTGTTCATGGACCTTGGGAGGGT
TGGGAAGATTTGTAGGGCTGCACATATAAGTGTGCAATAAATTTTGTTGG
TATTGGTATTATCTTATTTAAGTGTCTAAAATAATTACATTCTTCTCCAT
GAGATGAAAACGTTTTCTTAGAGCTCAGAGCACACTAGGAGTATGATAAT
TTTAGTTAGAAGTTtaaaatgttaatgttaataAGTTATGTGAAATATTA
GAAGATCTAACGATAttgtaaaaacgaaaaaaatatatcttaCATATCAA
ATGTACAAGTTTTTTCATCGTAAATC Run BLAST on NCBI protein sequence of TCONS_00062999-protein >TCONS_00062999-protein ID=TCONS_00062999-protein|Name=TCONS_00062999-protein|organism=Clytia hemisphaerica|type=polypeptide|length=371bp
MKARAMSAHLECCDETNTKIKTRMKEEDPIYENIARFDNVQIIDPRIIRI
IKRVHDTPDKIRQETDRFVQFIDELKKSYIQSIVKRTNAERRFNEAVTRY
EGYERELRGYQQEQCLIQFKDDTILAQQNLEKSHVELVLARNILESTERE
LLVHKEQLCLLSKKAEHSFIYFLRKFADRYWTDMYMTELNDCDVAPLPPP
HFEFPTELTHDDITTTTDSPPSTDCVIDDATTDDVSSSERRTSDEGFEWD
ATFDEHFQNSFQQPPRMLPMRYTKHDTSSDGEISDESDYEDDYPNRENGK
YESENFYDRFADDDDEERVNEKAKLYTPEPLYEDLFIYRRRCALMQRIKP
SRLMKYLRTFVHGPWEGWEDL Run BLAST on NCBI transcript from alignment at scaffold_375:195677..197402 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062999 ID=TCONS_00062999|Name=TCONS_00062999|organism=Clytia hemisphaerica|type=transcript|length=1726bp|location=Sequence derived from alignment at scaffold_375:195677..197402 (Clytia hemisphaerica)
GATTTACGATGAAAAAACTTGTACATTTGATATGtaagatatattttttt
cgtttttacaaTATCGTTAGATCTTCTAATATTTCACATAACTtattaac
attaacattttaAACTTCTAACTAAAATTATCATACTCCTAGTGTGCTCT
GAGCTCTAAGAAAACGTTTTCATCTCATGGAGAAGAATGTAATTATTTTA
GACACTTAAATAAGATAATACCAATACCAACAAAATTTATTGCACACTTA
TATGTGCAGCCCTACAAATCTTCCCAACCCTCCCAAGGTCCATGAACAAA
TGTTCTTAAATATTTCATTAGACGTGAAGGTTTGATCCGCTGCATAAGCG
CACAGCGTCGTCTGTAAATAAATAAGTCTTCATAGAGTGGTTCTGGTGTA
TAAAGTTTAGCTTTCTCATTAACCCGTTCTTCATCATCGTCATCGGCGAA
TCGATCGTAAAAGTTTTCAGATTCATATTTTCCGTTTTCCCGATTGGGAT
AATCGTCTTCGTAATCGGATTCGTCGGAAATTTCTCCGTCACTTGAGGTA
TCGTGTTTTGTGTAACGCATTGGAAGCATTCGAGGAGGCTGTTGGAAAGA
GTTTTGAAAATGTTCGTCAAAAGTTGCATCCCATTCAAAACCCTCATCAG
AAGTCCGACGTTCActactgctgacgtcatcagtcGTGGCATCATCGATG
ACGCAATCTGTAGACGGTGGACTATCTGTGGTTGTAGTTATATCATCATG
TGTTAGTTCGGTTGGGAATTCAAAATGTGGCGGTGGTAAAGGGGCTACGT
CACAGTCATTTAATTCCGTCATATACATATCTGTCCAGTACCTGTCagca
aattttctcaaaaagtagataaaagaGTGTTCAGCTTTCTTACTCAAAAG
ACATAATTGTTCTTTGTGGACTAATAGCTCACGCTCCGTTGATTCGAGTA
TATTACGAGCCAGTACCAATTCAACATGACTTTTTTCTAAGTTCTGTTGA
GCAAGTATGGTATCATCTTTAAATTGAATTAGACATTGTTCTTGTTGATA
GCCTCGTAACTCACGCTCGTAACCTTCGTATCTCGTAACAGCTTCGTTAA
ATCGTCGTTCAGCATTCGTACGTTTAACGATACTTTGTATATAcgatttt
ttcaattcatcgaTGAATTGTACGAATCGATCGGTTTCTTGTCGTATTTT
ATCAGGTGTATCGTGAACTCTTTTAATTATTCGAATAATTCGTGGATCGA
TTATTTGTACGTTATCGAATCGAGCGATATTTTCGTAAATTGGATCTTCT
TCTTTCATtctggtttttattttagtatttGTTTCATCACAACATTCCAA
ATGAGCCGACATTGCTCGTGCCTTCATTTTTGTTCtttaaattttcacta
aaaagaaCCAAACATTAAAAATCATCGATTCTACAAAGCCAAGTTACATT
GCACACAGACCtgcaaaaaaaacacaaaaaaacatttattctaacaaaat
tttctacaattattcaaaattcaacaaatttgTTCCTTTACATTTTTTAC
AGCCTGATCAAACAAACTCTGTCATGAATAAaccttgaaaaacaaaaaaa
tacgaGCTCCACGACGCCAACATTAACGTTTTACCCTCTATTTGAACGAG
TTGACCCTTTACAGAGAATTAAAGCAAGCATAATACTTGTTTTTTTCTCT
CCCTACTCAAGATATGTTAGATGCTA Coding sequence (CDS) from alignment at scaffold_375:195677..197402 >TCONS_00062999 ID=TCONS_00062999|Name=TCONS_00062999|organism=Clytia hemisphaerica|type=CDS|length=1116bp|location=Sequence derived from alignment at scaffold_375:195677..197402 (Clytia hemisphaerica)
CTACAAATCTTCCCAACCCTCCCAAGGTCCATGAACAAATGTTCTTAAAT
ATTTCATTAGACGTGAAGGTTTGATCCGCTGCATAAGCGCACAGCGTCGT
CTGTAAATAAATAAGTCTTCATAGAGTGGTTCTGGTGTATAAAGTTTAGC
TTTCTCATTAACCCGTTCTTCATCATCGTCATCGGCGAATCGATCGTAAA
AGTTTTCAGATTCATATTTTCCGTTTTCCCGATTGGGATAATCGTCTTCG
TAATCGGATTCGTCGGAAATTTCTCCGTCACTTGAGGTATCGTGTTTTGT
GTAACGCATTGGAAGCATTCGAGGAGGCTGTTGGAAAGAGTTTTGAAAAT
GTTCGTCAAAAGTTGCATCCCATTCAAAACCCTCATCAGAAGTCCGACGT
TCActactgctgacgtcatcagtcGTGGCATCATCGATGACGCAATCTGT
AGACGGTGGACTATCTGTGGTTGTAGTTATATCATCATGTGTTAGTTCGG
TTGGGAATTCAAAATGTGGCGGTGGTAAAGGGGCTACGTCACAGTCATTT
AATTCCGTCATATACATATCTGTCCAGTACCTGTCagcaaattttctcaa
aaagtagataaaagaGTGTTCAGCTTTCTTACTCAAAAGACATAATTGTT
CTTTGTGGACTAATAGCTCACGCTCCGTTGATTCGAGTATATTACGAGCC
AGTACCAATTCAACATGACTTTTTTCTAAGTTCTGTTGAGCAAGTATGGT
ATCATCTTTAAATTGAATTAGACATTGTTCTTGTTGATAGCCTCGTAACT
CACGCTCGTAACCTTCGTATCTCGTAACAGCTTCGTTAAATCGTCGTTCA
GCATTCGTACGTTTAACGATACTTTGTATATAcgattttttcaattcatc
gaTGAATTGTACGAATCGATCGGTTTCTTGTCGTATTTTATCAGGTGTAT
CGTGAACTCTTTTAATTATTCGAATAATTCGTGGATCGATTATTTGTACG
TTATCGAATCGAGCGATATTTTCGTAAATTGGATCTTCTTCTTTCATtct
ggtttttattttagtatttGTTTCATCACAACATTCCAAATGAGCCGACA
TTGCTCGTGCCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062999-exon-scaffold_375-1491911889:195677..197402 | TCONS_00062999-exon-scaffold_375-1491911889:195677..197402 | Clytia hemisphaerica | exon |
| TCONS_00062999-exon-scaffold_375-1510915933:195677..197402 | TCONS_00062999-exon-scaffold_375-1510915933:195677..197402 | Clytia hemisphaerica | exon |
| TCONS_00062999-exon-scaffold_375-1575043694:195677..197402 | TCONS_00062999-exon-scaffold_375-1575043694:195677..197402 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_375 | supercontig | scaffold_375:195677..197402 . |
Blast
The following BLAST results are available for this feature:
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