TCONS_00062987 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062987
Unique NameTCONS_00062987
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062987 ID=TCONS_00062987|Name=TCONS_00062987|organism=Clytia hemisphaerica|type=transcript|length=1337bp
GGGAGAGAGTATAATCATGACGAAGGAGAGTTACTATCCACTGATGGTAC
AATTTCAAAAAGGATATAAAAGCATGAATTTAGCTACGTTGAATTTCAAT
GATAATTGTAGCTAAACAAAAGTAGTTCTTCAAAGTTTAAGTTGTATTAG
GACGACATGAAGCTCGTTACAGCCACGGCAGTTTTACTTATGATGACGGT
CTTTCTGGATACTACTCCATCGGTAAACGGTCGTACTTTACCTCGGTCAA
AGCTAAGCATGTGTCATTTGAATTATATGTCGTTTCTTGGTTCAGATTGG
AAAAAGAAGGATATATATTTTTGTGATGACAAAGATGACGCGGTGTTTAT
TATTATCCAAAATGAAAATGCTGACGAAGCAAAACAGTGGTGTCGAGCAC
AAGGTCAACCAGACTCACAGTTCATTGAAAATCCGGAGAAAGAATTCCAC
AAAGAATTGAAAGCCAAATATGAAAGAGCACGTTACGGGATGTCAGAAAC
GAAAAGCGACCAACCATTGGGGAAGTTTGTTTGCAGAATTGACCCGTGGA
GGTGTGTATATCCCATCGAAGAACTACAAAGGGAAAATATCGAGAAAGAA
AGACATAGaattaacaaaattttgaaGGATGCCACTCATCCATTCTTTAA
ATCGTGAAATATTTTGGCATGTAAATCTATATCGAATATAAACTTCATTA
ATCACACCTATTGGATTTGTGTTTTTAGTACATGATATTTTTCTATGTCA
TTgcattaattaatttttcatagtTAAGCCTTGGCCGGTGAATCGGTTTC
GAAAGTAAGAAGGCTAAAATGATAGTGACTAGGAAGGTCCTAACAAGCTT
GGGGCCGACGGGCCGGTATTTGAAATTATGGTTACAATGGCTTGGAAGTG
ATCTAAATTTGATTTCTACGAAGTTATTGTAATGAAATAAACAAAGCAAT
TAGGTGATAATCACcaaagaatacacgtttttttttattagaacacctaa
aatttggctgagcctggatgtgcttatttttttagcaattttcagtctga
aatgttcttagatgcgttcttaaattttcagactactctaaattgacaat
atcatgcaaaataaagagcacttaaaattggtaaaatttggacaatattt
gactcttgatttagaaaatccattcctaagtttgtttaaaactgcttgaa
aagaggaaaaattgtagtttcttgtcattttttccaaactgaggctgggc
atgttcttacgatgttcttaatttttcgacgaatttcagcctcaatgttc
ttataaactgggttctaataaaagaaaaaacgtgtat
Run BLAST on NCBI

protein sequence of TCONS_00062987-protein

>TCONS_00062987-protein ID=TCONS_00062987-protein|Name=TCONS_00062987-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MKLVTATAVLLMMTVFLDTTPSVNGRTLPRSKLSMCHLNYMSFLGSDWKK
KDIYFCDDKDDAVFIIIQNENADEAKQWCRAQGQPDSQFIENPEKEFHKE
LKAKYERARYGMSETKSDQPLGKFVCRIDPWRCVYPIEELQRENIEKERH
RINKILKDATHPFFKS
Run BLAST on NCBI

transcript from alignment at scaffold_375:394675..397368-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062987 ID=TCONS_00062987|Name=TCONS_00062987|organism=Clytia hemisphaerica|type=transcript|length=2694bp|location=Sequence derived from alignment at scaffold_375:394675..397368- (Clytia hemisphaerica)
GGGAGAGAGTATAATCATGACGAAGGAGAGTTACTATCCACTGATGGTAC
AATTTCAAAAAGGATATAAAAGCATGAATTTAGCTACGTTGAATTTCAAT
GATAATTGTAGCTAAACAAAAGTAGTTCTTCAAAGTTTAAGTTGTATTAG
GACGACATGAAGCTCGTTACAGCCACGGCAGTTTTACTTATGATGACGGT
CTTTCTGGATACTACTCCATCGGTAAACGGTCGTACTTTACCTCGGTCAA
AGCTAAGCATGTGTCATTTGAATTATATGTCGTTTCTTGGTTCAGATTGG
AAAAAGAAGGATATATATTTTTGTGATGGTAAGTATTACTTGCCTTCCAG
CTACAAACCCTTTTAGCCTTTAGAATCTCGTAATTAGCTCATTTTTTTGG
AAATAGTAGGGGGGGTTTTGTTCGATTTTTGAAATCGCTCAATTGTTTTG
TTAGAAGCACTTGTTAATACATTTTTGGAAACTTCAACCTTACAGAAATC
GAAATTACGATGTTTCCAATTTTTTTTCAGACACTTTGGTGTGATTTTCG
GACAAATATGACGGTCTCAGGCATAAATCATAGGGTTAAAAATTAATGAA
AATTTTAGCTTGAGAGAACGGAGACCTGTTGTATATTTTTGGAAAGCTCT
CAAAAAATTAAGATTAGAGATATATTGCAAGTATAGGTGATTTCTGTACC
TAACTCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCCCTTGAAACCCGTGTTTTTCAGCCAGAAA
CAGCTGTTTTGTCCAGTTTTTGCGCTTTTTGAAGCTCAATATCTCGAGTT
AGGTACTGAAATCACCTATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTTA
ACCCTATGATTTTTGCCTGAGACCGTCATATTTGTCCGAAAATCACACCA
AAGTGTCCGAAAAAAAAATTGGAAACATCGTAATTTCGATTTCTCTAAAG
TTGAAGTTTCCAAAAATGTATAACAAGTGCTTCTAACAAAACAATCGAGC
GATTTTACAAAATGCCCTCTACTAAAATTATTTAAATGTAATTCATGCAA
GGAGTAATACTATAAGGAGAAATCGTATGACTTCGCAGAATGCTTTTTAT
ATTGTCTAATTTTAGACAAAGATGACGCGGTGTTTATTATTATCCAAAAT
GAAAATGCTGACGAAGCAAAACAGTGGTGTCGAGCACAAGGTCAACCAGA
CTCACAGTTCATTGAAAATCCGGAGAAAGAATTCCACAAAGAATTGAAAG
CCAAATATGAAAGGTTAAAGATTGTCGTTTGAATTTTTAAAGAAAAATAA
ACTATATGAAGTGTTTGTCAGTTAAAGCCTCGCCCCGCGGGGTGTTAATC
GAGGTGCACAGGATAGTTTCTTTATTTTGCAAATTCGTTTACAATTTTAT
AAGCTCACTCTTCTCTATGATTTGAGCAAAGAACCTGGTGAAGAGGGGGT
CTGCTGGTGGCCTGCTATCATAAGCCGTGCACTGTAAAACGTAAAAGGTA
ATTTCATTAGTGGTAACTTGAATGGAAGCTAATGTTATTAATTTAGGTCT
ATGTATCTAAAAATTAGATCTCTCATTTTACAGAGCACGTTACGGGATGT
CAGAAACGAAAAGCGACCAACCATTGGGGAAGTTTGTTTGCAGAATTGAC
CCGTGGAGGTGTGTATATCCCATCGAAGAACTACAAAGGGAAAATATCGA
GAAAGAAAGACATAGAATTAACAAAATTTTGAAGGATGCCACTCATCCAT
TCTTTAAATCGTGAAATATTTTGGCATGTAAATCTATATCGAATATAAAC
TTCATTAATCACACCTATTGGATTTGTGTTTTTAGTACATGATATTTTTC
TATGTCATTGCATTAATTAATTTTTCATAGTTAAGCCTTGGCCGGTGAAT
CGGTTTCGAAAGTAAGAAGGCTAAAATGATAGTGACTAGGAAGGTCCTAA
CAAGCTTGGGGCCGACGGGCCGGTATTTGAAATTATGGTTACAATGGCTT
GGAAGTGATCTAAATTTGATTTCTACGAAGTTATTGTAATGAAATAAACA
AAGCAATTAGGTGATAATCACCAAAGAATACACGTTTTTTTTTATTAGAA
CACCTAAAATTTGGCTGAGCCTGGATGTGCTTATTTTTTTAGCAATTTTC
AGTCTGAAATGTTCTTAGATGCGTTCTTAAATTTTCAGACTACTCTAAAT
TGACAATATCATGCAAAATAAAGAGCACTTAAAATTGGTAAAATTTGGAC
AATATTTGACTCTTGATTTAGAAAATCCATTCCTAAGTTTGTTTAAAACT
GCTTGAAAAGAGGAAAAATTGTAGTTTCTTGTCATTTTTTCCAAACTGAG
GCTGGGCATGTTCTTACGATGTTCTTAATTTTTCGACGAATTTCAGCCTC
AATGTTCTTATAAACTGGGTTCTAATAAAAGAAAAAACGTGTAT

Coding sequence (CDS) from alignment at scaffold_375:394675..397368-

>TCONS_00062987 ID=TCONS_00062987|Name=TCONS_00062987|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at scaffold_375:394675..397368- (Clytia hemisphaerica)
AGCACGTTACGGGATGTCAGAAACGAAAAGCGACCAACCATTGGGGAAGT
TTGTTTGCAGAATTGACCCGTGGAGGTGTGTATATCCCATCGAAGAACTA
CAAAGGGAAAATATCGAGAAAGAAAGACATAGAATTAACAAAATTTTGAA
GGATGCCACTCATCCATTCTTTAAATCGTGAACAAAGATGACGCGGTGTT
TATTATTATCCAAAATGAAAATGCTGACGAAGCAAAACAGTGGTGTCGAG
CACAAGGTCAACCAGACTCACAGTTCATTGAAAATCCGGAGAAAGAATTC
CACAAAGAATTGAAAGCCAAATATGAAAGATGAAGCTCGTTACAGCCACG
GCAGTTTTACTTATGATGACGGTCTTTCTGGATACTACTCCATCGGTAAA
CGGTCGTACTTTACCTCGGTCAAAGCTAAGCATGTGTCATTTGAATTATA
TGTCGTTTCTTGGTTCAGATTGGAAAAAGAAGGATATATATTTTTGTGAT
GAGCACGTTACGGGATGTCAGAAACGAAAAGCGACCAACCATTGGGGAAG
TTTGTTTGCAGAATTGACCCGTGGAGGTGTGTATATCCCATCGAAGAACT
ACAAAGGGAAAATATCGAGAAAGAAAGACATAGAATTAACAAAATTTTGA
AGGATGCCACTCATCCATTCTTTAAATCGTGAACAAAGATGACGCGGTGT
TTATTATTATCCAAAATGAAAATGCTGACGAAGCAAAACAGTGGTGTCGA
GCACAAGGTCAACCAGACTCACAGTTCATTGAAAATCCGGAGAAAGAATT
CCACAAAGAATTGAAAGCCAAATATGAAAGATGAAGCTCGTTACAGCCAC
GGCAGTTTTACTTATGATGACGGTCTTTCTGGATACTACTCCATCGGTAA
ACGGTCGTACTTTACCTCGGTCAAAGCTAAGCATGTGTCATTTGAATTAT
ATGTCGTTTCTTGGTTCAGATTGGAAAAAGAAGGATATATATTTTTGTGA
TGAGCACGTTACGGGATGTCAGAAACGAAAAGCGACCAACCATTGGGGAA
GTTTGTTTGCAGAATTGACCCGTGGAGGTGTGTATATCCCATCGAAGAAC
TACAAAGGGAAAATATCGAGAAAGAAAGACATAGAATTAACAAAATTTTG
AAGGATGCCACTCATCCATTCTTTAAATCGTGAACAAAGATGACGCGGTG
TTTATTATTATCCAAAATGAAAATGCTGACGAAGCAAAACAGTGGTGTCG
AGCACAAGGTCAACCAGACTCACAGTTCATTGAAAATCCGGAGAAAGAAT
TCCACAAAGAATTGAAAGCCAAATATGAAAGATGAAGCTCGTTACAGCCA
CGGCAGTTTTACTTATGATGACGGTCTTTCTGGATACTACTCCATCGGTA
AACGGTCGTACTTTACCTCGGTCAAAGCTAAGCATGTGTCATTTGAATTA
TATGTCGTTTCTTGGTTCAGATTGGAAAAAGAAGGATATATATTTTTGTG
ATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039447XLOC_039447Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062987-proteinTCONS_00062987-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062987-exon-scaffold_375-1575043694:397041..397368TCONS_00062987-exon-scaffold_375-1575043694:397041..397368Clytia hemisphaericaexon
TCONS_00062987-exon-scaffold_375-1575043694:395856..396003TCONS_00062987-exon-scaffold_375-1575043694:395856..396003Clytia hemisphaericaexon
TCONS_00062987-exon-scaffold_375-1575043694:394675..395535TCONS_00062987-exon-scaffold_375-1575043694:394675..395535Clytia hemisphaericaexon
TCONS_00062987-exon-scaffold_375-1510915933:397041..397368TCONS_00062987-exon-scaffold_375-1510915933:397041..397368Clytia hemisphaericaexon
TCONS_00062987-exon-scaffold_375-1510915933:395856..396003TCONS_00062987-exon-scaffold_375-1510915933:395856..396003Clytia hemisphaericaexon
TCONS_00062987-exon-scaffold_375-1510915933:394675..395535TCONS_00062987-exon-scaffold_375-1510915933:394675..395535Clytia hemisphaericaexon
TCONS_00062987-exon-scaffold_375-1491911889:397041..397368TCONS_00062987-exon-scaffold_375-1491911889:397041..397368Clytia hemisphaericaexon
TCONS_00062987-exon-scaffold_375-1491911889:395856..396003TCONS_00062987-exon-scaffold_375-1491911889:395856..396003Clytia hemisphaericaexon
TCONS_00062987-exon-scaffold_375-1491911889:394675..395535TCONS_00062987-exon-scaffold_375-1491911889:394675..395535Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:394675..397368 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.216228	0.247532	0.106819	0.108069	0	0	0.125084	0.11412	0.952251	0.40177	1.9091	2.54515	20.2172	15.7927	9.87178	5.87933	0.697844	0.815712	46.1173	101.428	19.9138	18.8016	0.707769	1.14901	2.73423	8.2733	0.267376	4.75312	11.3724	41.677
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062987 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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