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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062978 ID=TCONS_00062978|Name=TCONS_00062978|organism=Clytia hemisphaerica|type=transcript|length=2548bp
AAATGTTTTCGTTACTTTCACCCATACAGAAAATCGATAATCCCTCTAAT
CATAATCATCATTATTATGGAATGAGTTCATTTTGAAGAGGGAAGATCTA
TTTCTCTTCAGAATGGAACATTTGATACAATGATGGCGTCAGATCTCTCT
CCAAACACTTGATCACAATAAAGTTGACCTTTATCGCAAATACTTcactt
ttctcaaatttcttttctctaCCCAATTCTCATTGCATCATTATGTAAAG
CTTGTTTTGAATGACAAAACGTACTTCGTTTTTATGCCTAAACCACGATT
CCTTCCTAAAGTCCCCCTCAATCAAGCAGCAAAAAAGAAGTGTTTTTGAA
ATGAGAAAATTtcacgaaacaaaaaaatcctgTTACATCCTTGATAACTG
TTCACTACTTCACCAAAAATAATTCTACTACGTTCTTTCACGAACAGTTT
TTTTTGAAGACCGGAAATCATTGAACGTTAAATCAACATGGCGGATTAGT
AGCGTGATACCTCAAACACATGTTTTGCGGTTGAAGAGGAGGAAGTACTG
ACATACTCCCATCACATTTCTTGAATGTTTCTTTCTCCCATACATCCAAA
CGAGGCTGTGTCAAAGTGACGTTCATGGACGGTCAAAATAATCCATTGGA
ATGAGAGCCATCGCGCTCCaataaagattttaaattgAACCAGATTTCCA
GATTTCGAATATTTCTACGCGTGACCAACAGAAAATCGTTACTAGGGCAC
AATCAGAGGGCACAGCCAGTCTTAGTTCCCCAAGATTCATTGCGACTGAT
AAACGACCTTTACTCTTGTCTATGAAAAGCACAAGGGAGGTACGTGAGGC
TGTTCTGGATCTGTCATTTCTGCATAGTTTGTGTTTTCACgctGTGGATC
ATAAACTAATTAATCTTCCTTGATTAGCCTAAATGATAAATCTTTGGTTG
TTTGCAGATGAATTTATTGCGAGCTTTACGAGACTGAGACGGACTTTATT
ATTGTCTACAAGACGAGAGGATTTCGTCAAAGTTCTCTGACTCATTTAAA
CAACCTAATCCGTCCTTCATTCCTACTAATAGCTTTAATATTGATCACTG
ATTAAGGAGCTTTAACTTCTAGTCAGTCAGCTTTCACCAACAACTGAGCG
GACTCTCATATGAGATGACTGATTGGAGCCTCCatcatttatcatttttc
gCACGCAAAAATGTCCTCAAGTCAACTTCAATGTTGATTTTATGAGCTGC
CATTTGTAATGCTTTTCATCTTACCGCGATACAAATAAAAACTCGCAACA
TGAAAAGTTACTTTTTTAAGAATCATCCAAGCCAACAAGCATTTTGTGTG
AAACGCAAATATAAATTTATTTACAAGCGCCTCCTTTGAACGTTGTGACG
TCACAAACATTCTGTTGGGATTCTTGAAAAGAGACATGATCCAACCAACT
AACACAGCGCTTTGTAAAAGGGAAAGAATTCTTTGCTCAGCCTAATCCCA
ACTTCTTTTCAACTTTCATTTCACTTTGAGTAAATATAACTTTTTCATGG
TGTAGTGaacttttaaaaaagttttaaaagtctCGGTCACTAAAGTTTCA
TTTCAGTTCTTACATTGGGGGTCACTCAAGGGAAAGGTTTATGTGAGAGA
GAATTTGAGTCAGTAAATACCTGTTTGAGATCACAGGAGGAAGGCTTTCT
TTGAATTGTTTGTCACCTTGTTATTGTTCAAATCATTTTGTCAACAATGG
CGTCCCATTGAAGTTGTTACAAGATTTAAAGATAAATCGGCGCTCTATCG
TATtgtttcaaatttgaataatatGACACTGAAGTCAAACAAATAAAGAG
ACGAAGTAGAGACAAAGAAATAGTAACTTTTTTTGTGCAAACGGCTTGTG
AAGATATTATTTACCAGTTAGGCAAGAAGACATTAGTAAATAAAAACGAC
ATCTAAAAGAAAGGTCATCGCCATCATCTCATCTTCGTAAAgagaaattt
catcaaatcttTCGGCGGCGGCTGTAACTGAAAGAGAGGGAGAGAAATTA
GCTACCGATTATAGCAAGACAATTAGAGTTAACATACGATCATCTATCTG
ACTTGTCAAGCATGTATTGTCACCAAAATGAATATATGTTCCAGCAAGAA
CAAATACCAACGGCAGACTATCAAGCCTTTGCTACCAACACCACCGCGCA
ACACATTCCACCTGCATATAACACTTCTACCAATACATTGTCAcattttc
aacaacaaaatgaGATGGCTGCTATGTACAGTCCGCCTGGTGACCGCCCT
TCACCGTCTTTCCGTATAGAAGACATTTTGGTACAGAAAGGGCAACCGTA
CGGAGGAATGTACTCACCAACATCTTTCCAACAATATGGAGGAGGATATC
ACCCCGACAAAGAGTACCAAGgtatcaataacaTGAATTCGTTTCCGGCG
TATTTCCGGCTCAAACCAACCATGCGTACATCTAGTGGACGAAAATGTCG
GAAACCTCGAACAGTTTTTTCGGAACTTCAATTAATGGTTTTGGAANN Run BLAST on NCBI transcript from alignment at scaffold_375:275236..280619- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062978 ID=TCONS_00062978|Name=TCONS_00062978|organism=Clytia hemisphaerica|type=transcript|length=5384bp|location=Sequence derived from alignment at scaffold_375:275236..280619- (Clytia hemisphaerica)
AAATGTTTTCGTTACTTTCACCCATACAGAAAATCGATAATCCCTCTAAT
CATAATCATCATTATTATGGAATGAGTTCATTTTGAAGAGGGAAGATCTA
TTTCTCTTCAGAATGGAACATTTGATACAATGATGGCGTCAGATCTCTCT
CCAAACACTTGATCACAATAAAGTTGACCTTTATCGCAAATACTTCACTT
TTCTCAAATTTCTTTTCTCTACCCAATTCTCATTGCATCATTATGTAAAG
CTTGTTTTGAATGACAAAACGTACTTCGTTTTTATGCCTAAACCACGATT
CCTTCCTAAAGTCCCCCTCAATCAAGCAGCAAAAAAGAAGTGTTTTTGAA
ATGAGAAAATTTCACGAAACAAAAAAATCCTGTTACATCCTTGATAACTG
TTCACTACTTCACCAAAAATAATTCTACTACGTTCTTTCACGAACAGTTT
TTTTTGAAGACCGGAAATCATTGAACGTTAAATCAACATGGCGGATTAGT
AGCGTGATACCTCAAACACATGTTTTGCGGTTGAAGAGGAGGAAGTACTG
ACATACTCCCATCACATTTCTTGAATGTTTCTTTCTCCCATACATCCAAA
CGAGGCTGTGTCAAAGTGACGTTCATGGACGGTCAAAATAATCCATTGGA
ATGAGAGCCATCGCGCTCCAATAAAGATTTTAAATTGAACCAGATTTCCA
GATTTCGAATATTTCTACGCGTGACCAACAGAAAATCGTTACTAGGGCAC
AATCAGAGGGCACAGCCAGTCTTAGTTCCCCAAGATTCATTGCGACTGAT
AAACGACCTTTACTCTTGTCTATGAAAAGCACAAGGGAGGTACGTGAGGC
TGTTCTGGATCTGTCATTTCTGCATAGTTTGTGTTTTCACGTCGTAGATA
CTCTCGGGTACCTAATAGGCCATTTCACGGTCGAAATGGATCATGGGTAA
TCAGGACTGATTGCGCCTCCATTACGGCTTCCCNTTAGGTACCCGAGAGT
AGGCTGTGGATCATAAACTAATTAATCTTCCTTGATTAGCCTAAATGATA
AATCTTTGGTTGTTTGCAGATGAATTTATTGCGAGCTTTACGAGACTGAG
ACGGACTTTATTATTGTCTACAAGACGAGAGGATTTCGTCAAAGTTCTCT
GACTCATTTAAACAACCTAATCCGTCCTTCATTCCTACTAATAGCTTTAA
TATTGATCACTGATTAAGGAGCTTTAACTTCTAGTCAGTCAGCTTTCACC
AACAACTGAGCGGACTCTCATATGAGATGACTGATTGGAGCCTCCATCAT
TTATCATTTTTCGCACGCAAAAATGTCCTCAAGTCAACTTCAATGTTGAT
TTTATGAGCTGCCATTTGTAATGCTTTTCATCTTACCGCGATACAAATAA
AAACTCGCAACATGAAAAGTTACTTTTTTAAGAATCATCCAAGCCAACAA
GCATTTTGTGTGAAACGCAAATATAAATTTATTTACAAGCGCCTCCTTTG
AACGTTGTGACGTCACAAACATTCTGTTGGGATTCTTGAAAAGAGACATG
ATCCAACCAACTAACACAGCGCTTTGTAAAAGGGAAAGAATTCTTTGCTC
AGCCTAATCCCAACTTCTTTTCAACTTTCATTTCACTTTGAGTAAATATA
ACTTTTTCATGGTGTAGTGAACTTTTAAAAAAGTTTTAAAAGTCTCGGTC
ACTAAAGTTTCATTTCAGTTCTTACATTGGGGGTCACTCAAGGGAAAGGT
TTATGTGAGAGAGAATTTGAGTCAGTAAATACCTGTTTGAGATCACAGGA
GGAAGGCTTTCTTTGAATTGTTTGTCACCTTGTTATTGTTCAAATCATTT
TGTCAACAATGGCGTCCCATTGAAGTTGTTACAAGATTTAAAGATAAATC
GGCGCTCTATCGTATTGTTTCAAATTTGAATAATATGACACTGAAGTCAA
ACAAATAAAGAGACGAAGTAGAGACAAAGAAATAGTAACTTTTTTTGTGC
AAACGGCTTGTGAAGATATTATTTACCAGTTAGGCAAGAAGACATTAGTA
AATAAAAACGACATCTAAAAGAAAGGTCATCGCCATCATCTCATCTTCGT
AAAGAGAAATTTCATCAAATCTTTCGGCGGCGGCTGTAACTGAAAGAGAG
GGAGAGAAATTAGCTACCGATTATAGCAAGACAATTAGAGTTAACATACG
ATCATCTATCTGACTTGTCAAGCATGTATTGTCACCAAAATGAATATATG
TTCCAGCAAGAACAAATACCAACGGCAGACTATCAAGCCTTTGCTACCAA
CACCACCGCGCAACACATTCCACCTGCATATAACACTTCTACCAATACAT
TGTCACATTTTCAACAACAAAATGAGATGGCTGCTATGTACAGTCCGCCT
GGTGACCGCCCTTCACCGTCTTTCCGTATAGAAGACATTTTGGTACAGAA
AGGGCAACCGTACGGAGGAATGTACTCACCAACATCTTTCCAACAATATG
GAGGAGGATATCACCCCGACAAAGAGTACCAAGGTAATACTTCATATAGA
TTTATCTATTTCTTTTAAGAAAATTGACTTTCTTTTTGTAACTTTGTATT
TTTACGGCGTTCTTTTCGGCTCTCTCCATCGTTTACACTACGGTTAAAGC
TCAAAATAATTTTCAAGTTTTTAAGCTTGAAAAAGGTAACGTTTGAGCAG
TTCATCTTAATCCGCTGGGTTTTTGGCGTATTTTGATTAGGGTAATTTTG
TTCTGACTTGCAGTAAAAGTTATATATCACTATAAGATTGCTGTAAGTAA
GAAAAGTTTTGACCAATTATTCTTGCGCGTCCTGATTCTCCAACAATCTT
TTCCTTGATTGTGAAATTAACTACAGGGATCGGTAGGATACAGGCCGGGC
GGAACTACCATAAAAATGGAGGGGCTAAAGGATGTAAATGAGATGGAATT
GACCATGAATTGTTGAAAAAAGTCTATTTTGCTCAAAAGGGCCTGGAATG
TTGGTGGTTATATATATTGAGGATGAATGATTATTTAAGCATATTAGAGT
TTTCTGTGTACAGGTACAACATAGACAAAGTGTAGACAGACGACAGGATT
TTTTGTCTCGTGTTGATGTGTTGAAAGGTTGCACTTGTCTGTACCCACTG
ATTCATGTAGTTGGATTAACTTTCTATACTTTCGAAAAACCGCAAGCCTT
ATCGATTTCAAATAACGGTCCACTCACTCTTCCATCGTTCTGTCCTTCAT
TCCTTCACTAGTTTATGTGAAGCATAAGTGAAGCTGTTTTCTAGTGTACT
CTCATCCAGGCCCTGAGTTCTTTTTTTATGATAAAGTAGGGGGAAATTTG
TAAAATCGCTCGACTTTTTTAGTCAAAGCACTTGTGATACATTTTTGGAA
AGGTAAGGGGTAGGGGAATCAAAATGACATAGGTGCCAGTTTTCTTTCGG
ACACTTTAGTGTGTTTTTCGGACAAATATGACGGCCTCAGGCAAAAATCA
TAGGGTGTTGTATATTGTTGGAAAGCTCCCAAAAAAATTAAGATTAGAGA
TATATTACGAGTATATATGATTTCTGTACCTAACTCGAGATATCGAGCTT
CAAAAAGTGCAAAAAGTGGACAATGTAGCTGTTTCTGGCTGAAAAACACT
ATTTTTAAGGTATACTTGCTCATCGTGAAAGGAAAATCTATCGGTCATCT
ATCGAACAATTCTAAAAGTGAATGTTACCCTGAGTACGATGTCGGTTTAA
ATCTTTTACGGTACCTGAAGTTTTACTTGCCTAAGTTCGTATTGATAAAG
CTTTGTATTTTTGTAATAATCTCACTGAGATTATCATTGTCAAGGATAAG
GAAACAAAAAAATATTACTATTGGACGAGAATGAAAAAATTGATGCTATA
CAACTTTATAAAAGGTATCTACCGAAAGATTTCTACAATATTTTGTTGTG
CTCCTAAAATGTTTCCATTAACCATTTACTCTCGGGTACCTAATAACCGG
CATTTCTGGCCGAATCTTTCAAAAATTTATTATTTCATTCAAAGGAAGCC
AAAACTTCAATTCAACATGTTAAATTTATGGTTAATTTAAATTCTAACCT
AAAAATACCGTTAAAGTACTTTGGGTTGATTTGCCCAAAAAGTTAAGAAT
ATGCATATTGAAATGGAAAAACACCATTCTTATAAAAAAAGCGTGTATAA
CCGGTTTTTTGATGGGGTGGACCAGAATAGTGTGAAAATCACGGGTTTAT
TTCTTTCGGTCGGGATAATTCACTTTCCAAAGGGGCTTAATATGAAATTC
TGGATAGGAGATTGCAGTTCAAAAGGTTTGAAAAGAAGACAGTTCTTTTT
TTAAACGGAAGCAATTCTTGCGAATAAACTAATTTTCATAAGTTAACGAG
TTTTCAAAATTTTGCGAGAATTAGCTTTCACGAATGACCTGTTTAATATT
TTGCATAAAAAGAGTAGAATCTTTTGTAGTCAGTTTGGGAATGTTGGGAC
AGTATGATAACTGCGTATAATAATTTAGCTTTCCTAGGATTCTAATAAAC
CTTTTTTTTACCAAAATGTGCGGTTGGTTAAAGAAAGAATTGAAAACGAT
TTTTTGGTCAGGGTATATGCAAATGTTTGCCAACCTCTTGTGGGAATTTT
TTCATATTCTTATTTTAAAATTTAATTTTTCTAAATTCAACATTGCGCAA
GTCAATTCAATCTTGCTAGAAAGATTAGTAGGCATCCTATAGAATCATCC
AAAAATAACTTAAAAAATCAAATGAGTAAAGCTTGGTTAGTGTGAAAAAA
AAAATTAAGTCAAACATTTAAATGCTAACGGCACTATCGAAGGACCCTAA
AATATTTTCTAAATCTTAATTAAAATTATCAATTACGATTTCCAAAAAAA
CGGAAAAGGAATTTTTATGCATGAAATTTTCACGCGTAAGGGAATTAGAA
ACTTGTTTGTTTCCACTCGAAACAATTCAAATGATTCACAAATGACGAGT
TAGCGGTTTTGAAGGTTCATTACCTATTGTTATAGCGAAATATTTTCCCC
GACAAATGAACTAAGAAATACTCAAAGATAATGAAGCGATATTGAAGAGA
ATGTGACATACCTTTTGTCAATGCCTGTCACTCAATCTCATCACACTTTC
GAAACACTGACGCCAAAATGCGTACGATTCTATTACATGTATATGTCTCT
TGTTTTTGTTTATTTTGTCTAAATAATTCTATTTGGAATAATCTAATTGT
TTTTTAGGTATCAATAACATGAATTCGTTTCCGGCGTATTTCCGGCTCAA
ACCAACCATGCGTACATCTAGTGGACGAAAATGTCGGAAACCTCGAACAG
TTTTTTCGGAACTTCAATTAATGGTTTTGGAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062978-exon-scaffold_375-1575043694:279730..280619 | TCONS_00062978-exon-scaffold_375-1575043694:279730..280619 | Clytia hemisphaerica | exon |
| TCONS_00062978-exon-scaffold_375-1575043694:278087..279617 | TCONS_00062978-exon-scaffold_375-1575043694:278087..279617 | Clytia hemisphaerica | exon |
| TCONS_00062978-exon-scaffold_375-1575043694:275236..275362 | TCONS_00062978-exon-scaffold_375-1575043694:275236..275362 | Clytia hemisphaerica | exon |
| TCONS_00062978-exon-scaffold_375-1510915933:279730..280619 | TCONS_00062978-exon-scaffold_375-1510915933:279730..280619 | Clytia hemisphaerica | exon |
| TCONS_00062978-exon-scaffold_375-1510915933:278087..279617 | TCONS_00062978-exon-scaffold_375-1510915933:278087..279617 | Clytia hemisphaerica | exon |
| TCONS_00062978-exon-scaffold_375-1510915933:275236..275362 | TCONS_00062978-exon-scaffold_375-1510915933:275236..275362 | Clytia hemisphaerica | exon |
| TCONS_00062978-exon-scaffold_375-1491911889:279730..280619 | TCONS_00062978-exon-scaffold_375-1491911889:279730..280619 | Clytia hemisphaerica | exon |
| TCONS_00062978-exon-scaffold_375-1491911889:278087..279617 | TCONS_00062978-exon-scaffold_375-1491911889:278087..279617 | Clytia hemisphaerica | exon |
| TCONS_00062978-exon-scaffold_375-1491911889:275236..275362 | TCONS_00062978-exon-scaffold_375-1491911889:275236..275362 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_375 | supercontig | scaffold_375:275236..280619 - |
Blast
The following BLAST results are available for this feature:
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