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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062974 ID=TCONS_00062974|Name=TCONS_00062974|organism=Clytia hemisphaerica|type=transcript|length=2370bpRun BLAST on NCBI protein sequence of TCONS_00062974-protein >TCONS_00062974-protein ID=TCONS_00062974-protein|Name=TCONS_00062974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=405bp MAEEVRRRVVETTDDEDSKLVFETSEDVKVTRTFDQMKLKEDLIRGIYAYRun BLAST on NCBI transcript from alignment at scaffold_375:223537..238165- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062974 ID=TCONS_00062974|Name=TCONS_00062974|organism=Clytia hemisphaerica|type=transcript|length=14629bp|location=Sequence derived from alignment at scaffold_375:223537..238165- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_375:223537..238165- >TCONS_00062974 ID=TCONS_00062974|Name=TCONS_00062974|organism=Clytia hemisphaerica|type=CDS|length=13398bp|location=Sequence derived from alignment at scaffold_375:223537..238165- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062974 vs. Swiss-Prot (Human)
Match: IF4A3 (Eukaryotic initiation factor 4A-III OS=Homo sapiens GN=EIF4A3 PE=1 SV=4) HSP 1 Score: 727.243 bits (1876), Expect = 0.000e+0 Identity = 344/413 (83.29%), Postives = 383/413 (92.74%), Query Frame = 1
Query: 661 LLSSSFFKMAEEVRRRVVETTDDEDSKLVFETSEDVKVTRTFDQMKLKEDLIRGIYAYGFERPSAIQQRAILPVTKGRDVIAQAQSGTGKTATFSISALQQIDTRVRETQVLILSPTRELAGQIQKVVLALGDYMSVQCHACIGGTNIGEDIRKLDYGQHIVSGTPGRVFDMIKRRNLRTRSIKMFILDESDEMLNKGFKEQIYDVYRFLPPATQVVLVSATLPHEILEMTRKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFETLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVVSMHGDMPQKERESIMKEFRSGTSRVLISTDVWSRGLDVPQVSLVINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKADDIRVLRDIEQYYSTQIDEMPMNVADLI 1899
+ +++ + R+R+++ +++ +K+ FETSE+V VT TFD M L+EDL+RGIYAYGFE+PSAIQQRAI + KGRDVIAQ+QSGTGKTATFSIS LQ +D +VRETQ LIL+PTRELA QIQK +LALGDYM+VQCHACIGGTN+GEDIRKLDYGQH+V+GTPGRVFDMI+RR+LRTR+IKM +LDE+DEMLNKGFKEQIYDVYR+LPPATQVVL+SATLPHEILEMT KFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKF+TLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTV SMHGDMPQKERESIMKEFRSG SRVLISTDVW+RGLDVPQVSL+INYDLPNNRELYIHRIGRSGRYGRKGVAINFVK DDIR+LRDIEQYYSTQIDEMPMNVADLI
Sbjct: 1 MATTATMATSGSARKRLLK--EEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI 411 The following BLAST results are available for this feature:
BLAST of TCONS_00062974 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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