TCONS_00062972 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062972
Unique NameTCONS_00062972
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1916

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062972 ID=TCONS_00062972|Name=TCONS_00062972|organism=Clytia hemisphaerica|type=transcript|length=1916bp
ATTTTCTTTTATGTATAATTGATTTTGAACTATTTTCCAGTGCAAAATGA
TAATctatattgaataaaaaaatcaagatgtaCAACGGTTGGATCTCAGA
CAGAGAAGCTATTGAAAGTGAATGTGGTATAGAAAGTGTGTTAAATAATT
TCTCCTCTGGTGTTGGTCGAGATGTCACTGTTTCAATTATCAAGAGTCTG
GTTCACCAGAAAAGTGCTTCCAAAGAATTATTCAATTCTGAAAAGGACCT
TGAGTGGACTATGGATGTCATTTGTTTTGGTTTAACAATGCCACTGACAG
ATATGGAACTTGAAACAATCAAGAATTGTGTTTATCTCTACTTAGACTGG
TCTAGCGTTTTCTCTTCAAAACCGAAACCAGGCATTCCGTGCCAAATAGT
GCGCAATAAAGAACACTATTTCGCACAAATGTTGAAACATCTTACAAACA
TGTTCATACCAAGAGAAAGCTCAACAACAAATTACCAGAATAATTTCTGT
AGTCGTATTTTATCTGACATCAAAACTTTGGTCCAGGAAGGCAATATGGG
AAAGTCATCATCAGAGGATGTCTTGCGATTCTATTTAGGAATATCAGGAC
GTTTACTCTCTCAGCCACCTATGAAAGGTGGACTAGCAGACATGCTTTGT
GAACAGTTGATAAACTCTTTGATCACAGTTTGGTTACATGTTTCTTGTTA
TTATTTTCCATCGCCCACCCTCTGGTGTACATTACAAGAGGAATTCCAGA
CTTGGAGACACAACCATATCTTGATTTTACAATGGAATAAACTTACCTAC
GTTCTTACACGGAAAGTTTTAGCTATAATCTTTGGGCCTTCTTATCCACT
ACCTtcattatacaaaaatgatCAAACTGAAGACATAAAATTACCTCTAA
ACATGTCagatgatattattgttcaatGCTGGTTTCGTTTTCTTCACTGT
ATGGGAAATCCAGTAGACTTAACAAATAAAATCATCATCGCAAATACACC
TAACTTTGCAATGTATGGTTTGGAACACAACCAAGATCCCGCATCACATC
CCTCTTTGAAGAGCCTACCTCAGAGCTTTCTGAAAGCTATGCAAGGTGTT
TCAGTACTGGTGAAAATGTTCCTTGGTGCCTCTATACAAGATACACGATC
CACATCTATTCTTTCTCAATCATTTCGAGGTGATCGGAAATCAGCAACTC
TTGGTCCAACAGAATCTCATATAGCTGCAGTGTTTGCAAACAAAGCTGCT
ACTGTACCTGGTGTTAGAAGAATAGCTGATCAATCCTCAGCAAAGACAGT
CCGTGATGACAGCAACATCACGCCTAAAACAATGAATGCCATAGCTGCTG
AATCCAACTGTATTCTTCACTTGTTTGGTGGATGGTTGTTTGATGTATGT
CTGTCAGGAGTTGAACTTTCCAAGGTATTGGCTTCTGTTGGTGTCATCAG
CTGTGGAATTAAACCCCAATCGTATCACCTGAGTAGTGAAGATATTGAAG
TCGGGAGAAGCTTACCACCTGTTATTAAAAACGCGTTCGAACCAGGAAGA
GCAGAAGCCTTCGGTACACTAtgtcaaatattttgtcatGCTAATGTCAA
TGGACAAGCCATATTACCTGTCTATCTGTCAAGATTTTATTTGACACTTG
CTGTTGGTCTCTGCTATGGAGAGACAAAAGCTGGACAGGTGCTTGGAgag
attttgttgaatattaCAGATATTTTGAGAATTGATTTACATGGCGTTCA
AGTTCTCATCCCAAACATATTACAAGCTATTGAGCTCATCCTGCCGTCAA
GTGATATTTCTCTCGGATATGACTTATCACTGGTCATGCTGCGACGCTCC
TGCATTCACATTCTACTCTCAATGCTTTGTTTACCATTGCATTTTCTTCA
GCTGCCAATTCAAGGT
Run BLAST on NCBI

protein sequence of TCONS_00062972-protein

>TCONS_00062972-protein ID=TCONS_00062972-protein|Name=TCONS_00062972-protein|organism=Clytia hemisphaerica|type=polypeptide|length=613bp
MYNGWISDREAIESECGIESVLNNFSSGVGRDVTVSIIKSLVHQKSASKE
LFNSEKDLEWTMDVICFGLTMPLTDMELETIKNCVYLYLDWSSVFSSKPK
PGIPCQIVRNKEHYFAQMLKHLTNMFIPRESSTTNYQNNFCSRILSDIKT
LVQEGNMGKSSSEDVLRFYLGISGRLLSQPPMKGGLADMLCEQLINSLIT
VWLHVSCYYFPSPTLWCTLQEEFQTWRHNHILILQWNKLTYVLTRKVLAI
IFGPSYPLPSLYKNDQTEDIKLPLNMSDDIIVQCWFRFLHCMGNPVDLTN
KIIIANTPNFAMYGLEHNQDPASHPSLKSLPQSFLKAMQGVSVLVKMFLG
ASIQDTRSTSILSQSFRGDRKSATLGPTESHIAAVFANKAATVPGVRRIA
DQSSAKTVRDDSNITPKTMNAIAAESNCILHLFGGWLFDVCLSGVELSKV
LASVGVISCGIKPQSYHLSSEDIEVGRSLPPVIKNAFEPGRAEAFGTLCQ
IFCHANVNGQAILPVYLSRFYLTLAVGLCYGETKAGQVLGEILLNITDIL
RIDLHGVQVLIPNILQAIELILPSSDISLGYDLSLVMLRRSCIHILLSML
CLPLHFLQLPIQG
Run BLAST on NCBI

transcript from alignment at scaffold_375:559..3902-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062972 ID=TCONS_00062972|Name=TCONS_00062972|organism=Clytia hemisphaerica|type=transcript|length=3344bp|location=Sequence derived from alignment at scaffold_375:559..3902- (Clytia hemisphaerica)
ATTTTCTTTTATGTATAATTGATTTTGAACTATTTTCCAGTGCAAAATGA
TAATCTATATTGAATAAAAAAATCAAGATGTACAACGGTTGGATCTCAGA
CAGAGAAGCTATTGAAAGTGAATGTGGTATAGAAAGTGTGTTAAATAATT
TCTCCTCTGGTGTTGGTCGAGATGTCACTGTTTCAATTATCAAGAGTCTG
GTTCACCAGAAAAGTGCTTCCAAAGAATTATTCAATTCTGAAAAGGACCT
TGAGTGGACTATGGATGTCATTTGTTTTGGTTTAACAATGCCACTGACAG
ATATGGAACTTGAAACAATCAAGAATTGTGTTTATCTCTACTTAGACTGG
TCTAGCGTTTTCTCTTCAAAACCGAAACCAGGCATTCCGTGCCAAATAGT
GCGCAATAAAGAACACTATTTCGCACAAATGTTGAAACATCTTACAAACA
TGTTCATACCAAGAGAAAGCTCAACAACAAATTACCAGAATAATTTCTGT
AGTCGTATTTTATCTGACATCAAAACTTTGGTCCAGGAAGGCAATATGGG
AAAGTCATCATCAGAGGATGTCTTGCGATTCTATTTAGGAATATCAGGAC
GTTTACTCTCTCAGCCACCTATGAAAGGTGGACTAGCAGACATGCTTTGT
GAACAGTTGATAAACTCTTTGATCACAGTTTGGTTACATGTTTCTTGTTA
TTATTTTCCATCGCCCACCCTCTGGTGTACATTACAAGAGGAATTCCAGA
CTTGGAGACACAACCATATCTTGATTTTACAATGGAATAAACTTACCTAC
GTTCTTACACGGAAAGTTTTAGCTATAATCTTTGGGCCTTCTTATCCACT
ACCTTCATTATACAAAAATGATCAAACTGAAGACATAAAATTACCTCTAA
ACATGTCAGATGATATTATTGTTCAATGCTGGTTTCGTTTTCTTCACTGT
ATGGGAAATCCAGTAGACTTAACAAATAAAATCATCATCGCAAATACACC
TAACTTTGCAATGTATGGTTTGGAACACAACCAAGATCCCGCATCACATC
CCTCTTTGAAGAGCCTACCTCAGAGCTTTCTGAAAGCTATGCAAGGTGTT
TCAGTACTGGTGAAAATGTTCCTTGGTGCCTCTATACAAGATACACGATC
CACATCTATTCTTTCTCAATCATTTCGAGGTGATCGGAAATCAGCAACTC
TTGGTCCAACAGAATCTCATATAGCTGCAGTGTTTGCAAACAAAGCTGCT
ACTGTACCTGGTAAGTGTTTTCAATTCAATATGATTGATTGATTTATTTA
TTTATCTTTCTCATAAAAGGTTCTTTTCTTTTTTATGAAAAGCTTTATTT
CCCATTTCCTTTTTTTTAGATTAGAATTTTTTAAGTTTTACCTGAAATTT
TGTTTAGGTGTTAGAAGAATAGCTGATCAATCCTCAGCAAAGACAGTCCG
TGATGACAGCAACATCACGCCTAAAACAATGAATGCCATAGCTGCTGAAT
CCAACTGTATTCTTCACTTGTTTGGTGGATGGTTGTTTGATGTATGTCTG
TCAGGAGTTGAACTTTCCAAGGTATTGGCTTCTGTTGGTGTCATCAGCTG
TGGAATTAAACCCCAATCGTATCACCTGAGTAGTGAAGATATTGAAGTCG
GGAGAAGGTGAGTTTTGATTTTTAAAGTATATTTTTTAACTTAATTTTTT
GCCTTAACTTTTCTATACTTCTTNTCGGGAGAAGGTGAGTTTTATTTTTA
AAGTATATTTTTTAACTTAATTTTTTGCCTTAACTTTTCTATACTTCTTT
AAAACAGAATCAAAAACAAATAACAAGCTATTTCTTTTTTATGCTAATTA
TAGCTTAGCAATGTATGGCTAACATCAAGAATGGCATCAAGATCATTTAC
ATCATTTATTCTATAAACTTTATTTTATCTTACTTTAAATTTGAAAGTCT
TAATTTAAGACTTTTTTGTCTTTTTTACAGCTTACCACCTGTTATTAAAA
ACGCGTTCGAACCAGGAAGAGCAGAAGCCTTCGGTACACTATGTCAAATA
TTTTGTCATGCTAATGTCAATGGACAAGCCATATTACCTGTCTATCTGTC
AAGATTTTATTTGACACTTGCTGTTGGTCTCTGCTATGGAGAGGTATTGC
TCCTCGTTTGTCTTTTATATAAAAAGCATAANGTTTTATTTAACACTTGC
TGTTGGTCTCTGCTACGGAGAGGTATTGCTCCTCGTTTGTCTTTTATATA
AAAAGTATAATTTTAAAATGAACGGCTGTTTAACTCCCCATTAATTCACT
TTTATCACAACAACATATATTAACACTTGCTACTGATCTTTGCTATAGAA
AGGTATTTTTCCTCTTTTATGTAAAACGTAAACATTTGTTTAACTTTCCT
TTAAATGTTAGTATTATTAATTGTTTAAACAACTACCGGGTGACCCACGA
AAAAGTATAAGAGTTTGGAGGGTAATTCTGTCGAAAAAGAATTGAATTTT
AGCTAAATTCTTTTTTCATGGTAGAGAGGAAAGGCAAACTTAAATTTTGA
TGTATCATTTTTTAATTTTGGAGAGGTAGTTATCGAGATATGGAGGTATA
AAGTCAAAAGTCATTATAAAAAAACAGTTAAAAAACGTCAAAAAAGACAG
TATCAAATTTGTATCAGAACAAACATCTTTCCTTTGATCATTTAATATTT
CTTTGAAAAAATAACAACATTTAAGTTAGTTAGTGGGTCACCCGGTACAT
CTAATTAAGATCAATGACTCATTATTTAGATTATGCCTAATAAGTTCTTT
CTTCATTTTAGACAAAAGCTGGACAGGTGCTTGGAGAGATTTTGTTGAAT
ATTACAGATATTTTGAGAATTGATTTACATGGCGTTCAAGTTCTCATCCC
AAACATATTACAAGCTATTGAGCTCATCCTGCCGTCAAGTGATATTTCTC
TCGGGTAATTAATTTATCAATAAAAATCTTCATTCTTGATATCGTGATTT
ATAATACTGTGTTAATGATTGTTATTTTTATCAAGCTTCTTAAGTAAAAG
AAAACAAACGCATCTTACTTTCTTGGTGCAATAAAAATGGTCTTAGAAGC
ATACTGGACTGTTTGTCTTTTAAAATATCTTTTTATAAATTCTCTTTGTC
CAAAATACTTTTCGTTTATGATATATGAATGAAATGATTAGCAAGCCTTT
TTCAAAAGATATGTTTCGCATGATACTTTTCTCTTACTCTTTAGATATGA
CTTATCACTGGTCATGCTGCGACGCTCCTGCATTCACATTCTACTCTCAA
TGCTTTGTTTACCATTGCATTTTCTTCAGCTGCCAATTCAAGGT

Coding sequence (CDS) from alignment at scaffold_375:559..3902-

>TCONS_00062972 ID=TCONS_00062972|Name=TCONS_00062972|organism=Clytia hemisphaerica|type=CDS|length=9195bp|location=Sequence derived from alignment at scaffold_375:559..3902- (Clytia hemisphaerica)
ATATGACTTATCACTGGTCATGCTGCGACGCTCCTGCATTCACATTCTAC
TCTCAATGCTTTGTTTACCATTGCATTTTCTTCAGCTGCCAATTCAAGGT
ACAAAAGCTGGACAGGTGCTTGGAGAGATTTTGTTGAATATTACAGATAT
TTTGAGAATTGATTTACATGGCGTTCAAGTTCTCATCCCAAACATATTAC
AAGCTATTGAGCTCATCCTGCCGTCAAGTGATATTTCTCTCGGCTTACCA
CCTGTTATTAAAAACGCGTTCGAACCAGGAAGAGCAGAAGCCTTCGGTAC
ACTATGTCAAATATTTTGTCATGCTAATGTCAATGGACAAGCCATATTAC
CTGTCTATCTGTCAAGATTTTATTTGACACTTGCTGTTGGTCTCTGCTAT
GGAGAGGTGTTAGAAGAATAGCTGATCAATCCTCAGCAAAGACAGTCCGT
GATGACAGCAACATCACGCCTAAAACAATGAATGCCATAGCTGCTGAATC
CAACTGTATTCTTCACTTGTTTGGTGGATGGTTGTTTGATGTATGTCTGT
CAGGAGTTGAACTTTCCAAGGTATTGGCTTCTGTTGGTGTCATCAGCTGT
GGAATTAAACCCCAATCGTATCACCTGAGTAGTGAAGATATTGAAGTCGG
GAGAAGATGTACAACGGTTGGATCTCAGACAGAGAAGCTATTGAAAGTGA
ATGTGGTATAGAAAGTGTGTTAAATAATTTCTCCTCTGGTGTTGGTCGAG
ATGTCACTGTTTCAATTATCAAGAGTCTGGTTCACCAGAAAAGTGCTTCC
AAAGAATTATTCAATTCTGAAAAGGACCTTGAGTGGACTATGGATGTCAT
TTGTTTTGGTTTAACAATGCCACTGACAGATATGGAACTTGAAACAATCA
AGAATTGTGTTTATCTCTACTTAGACTGGTCTAGCGTTTTCTCTTCAAAA
CCGAAACCAGGCATTCCGTGCCAAATAGTGCGCAATAAAGAACACTATTT
CGCACAAATGTTGAAACATCTTACAAACATGTTCATACCAAGAGAAAGCT
CAACAACAAATTACCAGAATAATTTCTGTAGTCGTATTTTATCTGACATC
AAAACTTTGGTCCAGGAAGGCAATATGGGAAAGTCATCATCAGAGGATGT
CTTGCGATTCTATTTAGGAATATCAGGACGTTTACTCTCTCAGCCACCTA
TGAAAGGTGGACTAGCAGACATGCTTTGTGAACAGTTGATAAACTCTTTG
ATCACAGTTTGGTTACATGTTTCTTGTTATTATTTTCCATCGCCCACCCT
CTGGTGTACATTACAAGAGGAATTCCAGACTTGGAGACACAACCATATCT
TGATTTTACAATGGAATAAACTTACCTACGTTCTTACACGGAAAGTTTTA
GCTATAATCTTTGGGCCTTCTTATCCACTACCTTCATTATACAAAAATGA
TCAAACTGAAGACATAAAATTACCTCTAAACATGTCAGATGATATTATTG
TTCAATGCTGGTTTCGTTTTCTTCACTGTATGGGAAATCCAGTAGACTTA
ACAAATAAAATCATCATCGCAAATACACCTAACTTTGCAATGTATGGTTT
GGAACACAACCAAGATCCCGCATCACATCCCTCTTTGAAGAGCCTACCTC
AGAGCTTTCTGAAAGCTATGCAAGGTGTTTCAGTACTGGTGAAAATGTTC
CTTGGTGCCTCTATACAAGATACACGATCCACATCTATTCTTTCTCAATC
ATTTCGAGGTGATCGGAAATCAGCAACTCTTGGTCCAACAGAATCTCATA
TAGCTGCAGTGTTTGCAAACAAAGCTGCTACTGTACCTGATATGACTTAT
CACTGGTCATGCTGCGACGCTCCTGCATTCACATTCTACTCTCAATGCTT
TGTTTACCATTGCATTTTCTTCAGCTGCCAATTCAAGGTACAAAAGCTGG
ACAGGTGCTTGGAGAGATTTTGTTGAATATTACAGATATTTTGAGAATTG
ATTTACATGGCGTTCAAGTTCTCATCCCAAACATATTACAAGCTATTGAG
CTCATCCTGCCGTCAAGTGATATTTCTCTCGGCTTACCACCTGTTATTAA
AAACGCGTTCGAACCAGGAAGAGCAGAAGCCTTCGGTACACTATGTCAAA
TATTTTGTCATGCTAATGTCAATGGACAAGCCATATTACCTGTCTATCTG
TCAAGATTTTATTTGACACTTGCTGTTGGTCTCTGCTATGGAGAGGTGTT
AGAAGAATAGCTGATCAATCCTCAGCAAAGACAGTCCGTGATGACAGCAA
CATCACGCCTAAAACAATGAATGCCATAGCTGCTGAATCCAACTGTATTC
TTCACTTGTTTGGTGGATGGTTGTTTGATGTATGTCTGTCAGGAGTTGAA
CTTTCCAAGGTATTGGCTTCTGTTGGTGTCATCAGCTGTGGAATTAAACC
CCAATCGTATCACCTGAGTAGTGAAGATATTGAAGTCGGGAGAAGATGTA
CAACGGTTGGATCTCAGACAGAGAAGCTATTGAAAGTGAATGTGGTATAG
AAAGTGTGTTAAATAATTTCTCCTCTGGTGTTGGTCGAGATGTCACTGTT
TCAATTATCAAGAGTCTGGTTCACCAGAAAAGTGCTTCCAAAGAATTATT
CAATTCTGAAAAGGACCTTGAGTGGACTATGGATGTCATTTGTTTTGGTT
TAACAATGCCACTGACAGATATGGAACTTGAAACAATCAAGAATTGTGTT
TATCTCTACTTAGACTGGTCTAGCGTTTTCTCTTCAAAACCGAAACCAGG
CATTCCGTGCCAAATAGTGCGCAATAAAGAACACTATTTCGCACAAATGT
TGAAACATCTTACAAACATGTTCATACCAAGAGAAAGCTCAACAACAAAT
TACCAGAATAATTTCTGTAGTCGTATTTTATCTGACATCAAAACTTTGGT
CCAGGAAGGCAATATGGGAAAGTCATCATCAGAGGATGTCTTGCGATTCT
ATTTAGGAATATCAGGACGTTTACTCTCTCAGCCACCTATGAAAGGTGGA
CTAGCAGACATGCTTTGTGAACAGTTGATAAACTCTTTGATCACAGTTTG
GTTACATGTTTCTTGTTATTATTTTCCATCGCCCACCCTCTGGTGTACAT
TACAAGAGGAATTCCAGACTTGGAGACACAACCATATCTTGATTTTACAA
TGGAATAAACTTACCTACGTTCTTACACGGAAAGTTTTAGCTATAATCTT
TGGGCCTTCTTATCCACTACCTTCATTATACAAAAATGATCAAACTGAAG
ACATAAAATTACCTCTAAACATGTCAGATGATATTATTGTTCAATGCTGG
TTTCGTTTTCTTCACTGTATGGGAAATCCAGTAGACTTAACAAATAAAAT
CATCATCGCAAATACACCTAACTTTGCAATGTATGGTTTGGAACACAACC
AAGATCCCGCATCACATCCCTCTTTGAAGAGCCTACCTCAGAGCTTTCTG
AAAGCTATGCAAGGTGTTTCAGTACTGGTGAAAATGTTCCTTGGTGCCTC
TATACAAGATACACGATCCACATCTATTCTTTCTCAATCATTTCGAGGTG
ATCGGAAATCAGCAACTCTTGGTCCAACAGAATCTCATATAGCTGCAGTG
TTTGCAAACAAAGCTGCTACTGTACCTGATATGACTTATCACTGGTCATG
CTGCGACGCTCCTGCATTCACATTCTACTCTCAATGCTTTGTTTACCATT
GCATTTTCTTCAGCTGCCAATTCAAGGTACAAAAGCTGGACAGGTGCTTG
GAGAGATTTTGTTGAATATTACAGATATTTTGAGAATTGATTTACATGGC
GTTCAAGTTCTCATCCCAAACATATTACAAGCTATTGAGCTCATCCTGCC
GTCAAGTGATATTTCTCTCGGCTTACCACCTGTTATTAAAAACGCGTTCG
AACCAGGAAGAGCAGAAGCCTTCGGTACACTATGTCAAATATTTTGTCAT
GCTAATGTCAATGGACAAGCCATATTACCTGTCTATCTGTCAAGATTTTA
TTTGACACTTGCTGTTGGTCTCTGCTATGGAGAGGTGTTAGAAGAATAGC
TGATCAATCCTCAGCAAAGACAGTCCGTGATGACAGCAACATCACGCCTA
AAACAATGAATGCCATAGCTGCTGAATCCAACTGTATTCTTCACTTGTTT
GGTGGATGGTTGTTTGATGTATGTCTGTCAGGAGTTGAACTTTCCAAGGT
ATTGGCTTCTGTTGGTGTCATCAGCTGTGGAATTAAACCCCAATCGTATC
ACCTGAGTAGTGAAGATATTGAAGTCGGGAGAAGATGTACAACGGTTGGA
TCTCAGACAGAGAAGCTATTGAAAGTGAATGTGGTATAGAAAGTGTGTTA
AATAATTTCTCCTCTGGTGTTGGTCGAGATGTCACTGTTTCAATTATCAA
GAGTCTGGTTCACCAGAAAAGTGCTTCCAAAGAATTATTCAATTCTGAAA
AGGACCTTGAGTGGACTATGGATGTCATTTGTTTTGGTTTAACAATGCCA
CTGACAGATATGGAACTTGAAACAATCAAGAATTGTGTTTATCTCTACTT
AGACTGGTCTAGCGTTTTCTCTTCAAAACCGAAACCAGGCATTCCGTGCC
AAATAGTGCGCAATAAAGAACACTATTTCGCACAAATGTTGAAACATCTT
ACAAACATGTTCATACCAAGAGAAAGCTCAACAACAAATTACCAGAATAA
TTTCTGTAGTCGTATTTTATCTGACATCAAAACTTTGGTCCAGGAAGGCA
ATATGGGAAAGTCATCATCAGAGGATGTCTTGCGATTCTATTTAGGAATA
TCAGGACGTTTACTCTCTCAGCCACCTATGAAAGGTGGACTAGCAGACAT
GCTTTGTGAACAGTTGATAAACTCTTTGATCACAGTTTGGTTACATGTTT
CTTGTTATTATTTTCCATCGCCCACCCTCTGGTGTACATTACAAGAGGAA
TTCCAGACTTGGAGACACAACCATATCTTGATTTTACAATGGAATAAACT
TACCTACGTTCTTACACGGAAAGTTTTAGCTATAATCTTTGGGCCTTCTT
ATCCACTACCTTCATTATACAAAAATGATCAAACTGAAGACATAAAATTA
CCTCTAAACATGTCAGATGATATTATTGTTCAATGCTGGTTTCGTTTTCT
TCACTGTATGGGAAATCCAGTAGACTTAACAAATAAAATCATCATCGCAA
ATACACCTAACTTTGCAATGTATGGTTTGGAACACAACCAAGATCCCGCA
TCACATCCCTCTTTGAAGAGCCTACCTCAGAGCTTTCTGAAAGCTATGCA
AGGTGTTTCAGTACTGGTGAAAATGTTCCTTGGTGCCTCTATACAAGATA
CACGATCCACATCTATTCTTTCTCAATCATTTCGAGGTGATCGGAAATCA
GCAACTCTTGGTCCAACAGAATCTCATATAGCTGCAGTGTTTGCAAACAA
AGCTGCTACTGTACCTGATATGACTTATCACTGGTCATGCTGCGACGCTC
CTGCATTCACATTCTACTCTCAATGCTTTGTTTACCATTGCATTTTCTTC
AGCTGCCAATTCAAGGTACAAAAGCTGGACAGGTGCTTGGAGAGATTTTG
TTGAATATTACAGATATTTTGAGAATTGATTTACATGGCGTTCAAGTTCT
CATCCCAAACATATTACAAGCTATTGAGCTCATCCTGCCGTCAAGTGATA
TTTCTCTCGGCTTACCACCTGTTATTAAAAACGCGTTCGAACCAGGAAGA
GCAGAAGCCTTCGGTACACTATGTCAAATATTTTGTCATGCTAATGTCAA
TGGACAAGCCATATTACCTGTCTATCTGTCAAGATTTTATTTGACACTTG
CTGTTGGTCTCTGCTATGGAGAGGTGTTAGAAGAATAGCTGATCAATCCT
CAGCAAAGACAGTCCGTGATGACAGCAACATCACGCCTAAAACAATGAAT
GCCATAGCTGCTGAATCCAACTGTATTCTTCACTTGTTTGGTGGATGGTT
GTTTGATGTATGTCTGTCAGGAGTTGAACTTTCCAAGGTATTGGCTTCTG
TTGGTGTCATCAGCTGTGGAATTAAACCCCAATCGTATCACCTGAGTAGT
GAAGATATTGAAGTCGGGAGAAGATGTACAACGGTTGGATCTCAGACAGA
GAAGCTATTGAAAGTGAATGTGGTATAGAAAGTGTGTTAAATAATTTCTC
CTCTGGTGTTGGTCGAGATGTCACTGTTTCAATTATCAAGAGTCTGGTTC
ACCAGAAAAGTGCTTCCAAAGAATTATTCAATTCTGAAAAGGACCTTGAG
TGGACTATGGATGTCATTTGTTTTGGTTTAACAATGCCACTGACAGATAT
GGAACTTGAAACAATCAAGAATTGTGTTTATCTCTACTTAGACTGGTCTA
GCGTTTTCTCTTCAAAACCGAAACCAGGCATTCCGTGCCAAATAGTGCGC
AATAAAGAACACTATTTCGCACAAATGTTGAAACATCTTACAAACATGTT
CATACCAAGAGAAAGCTCAACAACAAATTACCAGAATAATTTCTGTAGTC
GTATTTTATCTGACATCAAAACTTTGGTCCAGGAAGGCAATATGGGAAAG
TCATCATCAGAGGATGTCTTGCGATTCTATTTAGGAATATCAGGACGTTT
ACTCTCTCAGCCACCTATGAAAGGTGGACTAGCAGACATGCTTTGTGAAC
AGTTGATAAACTCTTTGATCACAGTTTGGTTACATGTTTCTTGTTATTAT
TTTCCATCGCCCACCCTCTGGTGTACATTACAAGAGGAATTCCAGACTTG
GAGACACAACCATATCTTGATTTTACAATGGAATAAACTTACCTACGTTC
TTACACGGAAAGTTTTAGCTATAATCTTTGGGCCTTCTTATCCACTACCT
TCATTATACAAAAATGATCAAACTGAAGACATAAAATTACCTCTAAACAT
GTCAGATGATATTATTGTTCAATGCTGGTTTCGTTTTCTTCACTGTATGG
GAAATCCAGTAGACTTAACAAATAAAATCATCATCGCAAATACACCTAAC
TTTGCAATGTATGGTTTGGAACACAACCAAGATCCCGCATCACATCCCTC
TTTGAAGAGCCTACCTCAGAGCTTTCTGAAAGCTATGCAAGGTGTTTCAG
TACTGGTGAAAATGTTCCTTGGTGCCTCTATACAAGATACACGATCCACA
TCTATTCTTTCTCAATCATTTCGAGGTGATCGGAAATCAGCAACTCTTGG
TCCAACAGAATCTCATATAGCTGCAGTGTTTGCAAACAAAGCTGCTACTG
TACCTGATATGACTTATCACTGGTCATGCTGCGACGCTCCTGCATTCACA
TTCTACTCTCAATGCTTTGTTTACCATTGCATTTTCTTCAGCTGCCAATT
CAAGGTACAAAAGCTGGACAGGTGCTTGGAGAGATTTTGTTGAATATTAC
AGATATTTTGAGAATTGATTTACATGGCGTTCAAGTTCTCATCCCAAACA
TATTACAAGCTATTGAGCTCATCCTGCCGTCAAGTGATATTTCTCTCGGC
TTACCACCTGTTATTAAAAACGCGTTCGAACCAGGAAGAGCAGAAGCCTT
CGGTACACTATGTCAAATATTTTGTCATGCTAATGTCAATGGACAAGCCA
TATTACCTGTCTATCTGTCAAGATTTTATTTGACACTTGCTGTTGGTCTC
TGCTATGGAGAGGTGTTAGAAGAATAGCTGATCAATCCTCAGCAAAGACA
GTCCGTGATGACAGCAACATCACGCCTAAAACAATGAATGCCATAGCTGC
TGAATCCAACTGTATTCTTCACTTGTTTGGTGGATGGTTGTTTGATGTAT
GTCTGTCAGGAGTTGAACTTTCCAAGGTATTGGCTTCTGTTGGTGTCATC
AGCTGTGGAATTAAACCCCAATCGTATCACCTGAGTAGTGAAGATATTGA
AGTCGGGAGAAGATGTACAACGGTTGGATCTCAGACAGAGAAGCTATTGA
AAGTGAATGTGGTATAGAAAGTGTGTTAAATAATTTCTCCTCTGGTGTTG
GTCGAGATGTCACTGTTTCAATTATCAAGAGTCTGGTTCACCAGAAAAGT
GCTTCCAAAGAATTATTCAATTCTGAAAAGGACCTTGAGTGGACTATGGA
TGTCATTTGTTTTGGTTTAACAATGCCACTGACAGATATGGAACTTGAAA
CAATCAAGAATTGTGTTTATCTCTACTTAGACTGGTCTAGCGTTTTCTCT
TCAAAACCGAAACCAGGCATTCCGTGCCAAATAGTGCGCAATAAAGAACA
CTATTTCGCACAAATGTTGAAACATCTTACAAACATGTTCATACCAAGAG
AAAGCTCAACAACAAATTACCAGAATAATTTCTGTAGTCGTATTTTATCT
GACATCAAAACTTTGGTCCAGGAAGGCAATATGGGAAAGTCATCATCAGA
GGATGTCTTGCGATTCTATTTAGGAATATCAGGACGTTTACTCTCTCAGC
CACCTATGAAAGGTGGACTAGCAGACATGCTTTGTGAACAGTTGATAAAC
TCTTTGATCACAGTTTGGTTACATGTTTCTTGTTATTATTTTCCATCGCC
CACCCTCTGGTGTACATTACAAGAGGAATTCCAGACTTGGAGACACAACC
ATATCTTGATTTTACAATGGAATAAACTTACCTACGTTCTTACACGGAAA
GTTTTAGCTATAATCTTTGGGCCTTCTTATCCACTACCTTCATTATACAA
AAATGATCAAACTGAAGACATAAAATTACCTCTAAACATGTCAGATGATA
TTATTGTTCAATGCTGGTTTCGTTTTCTTCACTGTATGGGAAATCCAGTA
GACTTAACAAATAAAATCATCATCGCAAATACACCTAACTTTGCAATGTA
TGGTTTGGAACACAACCAAGATCCCGCATCACATCCCTCTTTGAAGAGCC
TACCTCAGAGCTTTCTGAAAGCTATGCAAGGTGTTTCAGTACTGGTGAAA
ATGTTCCTTGGTGCCTCTATACAAGATACACGATCCACATCTATTCTTTC
TCAATCATTTCGAGGTGATCGGAAATCAGCAACTCTTGGTCCAACAGAAT
CTCATATAGCTGCAGTGTTTGCAAACAAAGCTGCTACTGTACCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039442XLOC_039442Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062972-proteinTCONS_00062972-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062972-exon-scaffold_375-1575043694:2643..3902TCONS_00062972-exon-scaffold_375-1575043694:2643..3902Clytia hemisphaericaexon
TCONS_00062972-exon-scaffold_375-1575043694:2246..2495TCONS_00062972-exon-scaffold_375-1575043694:2246..2495Clytia hemisphaericaexon
TCONS_00062972-exon-scaffold_375-1575043694:1760..1922TCONS_00062972-exon-scaffold_375-1575043694:1760..1922Clytia hemisphaericaexon
TCONS_00062972-exon-scaffold_375-1575043694:949..1091TCONS_00062972-exon-scaffold_375-1575043694:949..1091Clytia hemisphaericaexon
TCONS_00062972-exon-scaffold_375-1575043694:559..658TCONS_00062972-exon-scaffold_375-1575043694:559..658Clytia hemisphaericaexon
TCONS_00062972-exon-scaffold_375-1510915933:2643..3902TCONS_00062972-exon-scaffold_375-1510915933:2643..3902Clytia hemisphaericaexon
TCONS_00062972-exon-scaffold_375-1510915933:2246..2495TCONS_00062972-exon-scaffold_375-1510915933:2246..2495Clytia hemisphaericaexon
TCONS_00062972-exon-scaffold_375-1510915933:1760..1922TCONS_00062972-exon-scaffold_375-1510915933:1760..1922Clytia hemisphaericaexon
TCONS_00062972-exon-scaffold_375-1510915933:949..1091TCONS_00062972-exon-scaffold_375-1510915933:949..1091Clytia hemisphaericaexon
TCONS_00062972-exon-scaffold_375-1510915933:559..658TCONS_00062972-exon-scaffold_375-1510915933:559..658Clytia hemisphaericaexon
TCONS_00062972-exon-scaffold_375-1491911889:2643..3902TCONS_00062972-exon-scaffold_375-1491911889:2643..3902Clytia hemisphaericaexon
TCONS_00062972-exon-scaffold_375-1491911889:2246..2495TCONS_00062972-exon-scaffold_375-1491911889:2246..2495Clytia hemisphaericaexon
TCONS_00062972-exon-scaffold_375-1491911889:1760..1922TCONS_00062972-exon-scaffold_375-1491911889:1760..1922Clytia hemisphaericaexon
TCONS_00062972-exon-scaffold_375-1491911889:949..1091TCONS_00062972-exon-scaffold_375-1491911889:949..1091Clytia hemisphaericaexon
TCONS_00062972-exon-scaffold_375-1491911889:559..658TCONS_00062972-exon-scaffold_375-1491911889:559..658Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:559..3902 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.67871	3.01478	2.02139	1.49527	14.0343	9.28038	11.4203	12.8666	8.07352	9.79293	8.77478	6.97269	9.20661	8.20419	6.54195	7.50871	10.3131	9.74967	5.76641	7.37505	8.07503	8.93093	5.05063	7.9807	11.6409	12.7258	6.2692	5.32067	7.33571	6.79109
Blast
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BLAST of TCONS_00062972 vs. Swiss-Prot (Human)
Match: RLGPB (Ral GTPase-activating protein subunit beta OS=Homo sapiens GN=RALGAPB PE=1 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.381e-96
Identity = 212/627 (33.81%), Postives = 326/627 (51.99%), Query Frame = 3 
Query:   78 MYNGWISDREAIESECGIESVLNNFSSGVGRDVTVSIIKSL-----VHQKSASKELFNSEKDLEWTMDVICFGLTMPLTDMELETIKNCVYLYLDWSSVFSSKPKPGIPCQIVRNKEHYFAQMLKHLTNMFIPRESSTTNYQNNFCSRILSDIKTLVQEGN-MGKSSSEDVLRFYLGISGRLLSQPPMKGGLADMLCEQLINSLITVWLHVSCYYFPSPTLWCTLQEEFQTWRHNHILILQWNKLTYVLTRKVLAIIFGPSYPLPSLYKNDQTEDIKLPLNMSDDIIVQCWFRFLHCMGNPVDLTNKIIIANTPNFAMYGLEHN---QDPASHPSLKSLPQSFLKAMQGVSVLVKMFLGASIQDTRS---TSILSQSFRGDRKSATLGPTESHIAAVFANKAA------TVPGVRRIADQSSAKTVRDDSNITPK----TMNAIAAESNCILHLFGGWLFDVCLSGVEL-------SKVLASVGVISCGIKPQSYHLSSEDIEVGRSL--PPVIKNAFEPGRAEAFGTLCQIFCHANVNGQAILPVYLSRFYLTLAVGLCYGETKAGQVLGEILLNITDILRIDLHGVQVLIPNILQAIELILPSSDIS-LGYDLSLVMLRRSCIHI 1862
            MY+ W S    I+++ G  SVL+++   VGR+V  ++++ L         + S+ L  ++K+++WTM+VIC+GLT+PL   + ET+K CV +Y DW       PK  IP  +++    Y   +LKHL N+F+PR+   ++ Q   C ++L  I+ L +E + M + + E +L F L I+  LL+ P ++GG+A+ L E+LI  L  VWL      FP+P  W T +E    WRH+  ++ QW+K+   LT ++L   +GPS+P    +K    +   +P  M ++ + Q WFRFLH + NPVDL+N  II++TP F    L  +   Q+   +P LK LPQ F +AM+G+S LV  FLG S   + S   T +   S       +T  P      AV  NKA       +     ++  Q+S+ +     N T             + N IL+LFG WLFD      +L       S + A     S   + +   +S+ D  V   +       + +E GRAEA GTLC+IFC +   G+ ILP YLSRFY+ L  GL   +     VL  ++LN   +   DL G+ V++P  + A+E ILP  ++S     ++   LRRS I+I
Sbjct:    1 MYSEWRSLHLVIQNDQGHTSVLHSYPESVGREVANAVVRPLGQVLGTPSVAGSENLLKTDKEVKWTMEVICYGLTLPL---DGETVKYCVDVYTDWIMALV-LPKDSIPLPVIKEPNQYVQTILKHLQNLFVPRQEQGSS-QIRLCLQVLRAIQKLARESSLMARETWEVLLLFLLQINDILLAPPTVQGGIAENLAEKLIGVLFEVWLLACTRCFPTPPYWKTAKEMVANWRHHPAVVEQWSKVICALTSRLLRFTYGPSFP---AFKVPDEDASLIPPEMDNECVAQTWFRFLHMLSNPVDLSNPAIISSTPKFQEQFLNVSGMPQELNQYPCLKHLPQIFFRAMRGISCLVDAFLGISRPRSDSAPPTPVNRLSMPQSAAVSTTPPHNRRHRAVTVNKATMKTSTVSTAHASKVQHQTSSTSPLSSPNQTSSEPRPLPAPRRPKVNSILNLFGSWLFDAAFVHCKLHNGINRDSSMTAITTQASMEFRRKGSQMST-DTMVSNPMFDASEFPDNYEAGRAEACGTLCRIFC-SKKTGEEILPAYLSRFYMLLIQGLQINDYVCHPVLASVILNSPPLFCCDLKGIDVVVPYFISALETILPDRELSKFKSYVNPTELRRSSINI 617
The following BLAST results are available for this feature:
BLAST of TCONS_00062972 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RLGPB4.381e-9633.81Ral GTPase-activating protein subunit beta OS=Homo... [more]
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