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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062967 ID=TCONS_00062967|Name=TCONS_00062967|organism=Clytia hemisphaerica|type=transcript|length=755bp
tcTGCCAGCTGGCAGAGTGAAATAATAATCAATTTATCAATCGATTTATT
TGACGGTTTCTATGATTCATTTGCTATagttttgatcacgtgatcaaaat
tataaatattcattttttaatgactttGTGACATAATTAACATAATTTAT
TACAAATATGGTGATGGAATGCCTTTAATTGCTTCAGTAATTTAATTGGA
TCATAAAGTTAATGTAATGACGACAGTTCTTAGTCACTCAAGGACGTGTC
GAGTCGCTTTAAGATTGTAAACATTTGAAGCTGAGGAAAGAAACACAACG
GAGTTTTGCGAAGATAATTGACGAAAAATAACGATGCTTCGAAATTTATT
GGTGATTTTCTTGTTATGTTCGTTTGAAGTGGAAATGAATGATGCAGTAC
CGTTATCAAAATTATCTAAAATGATGGCTGACCTACCCTTTCGAAGCCGC
CATACACCGTGTGGGAAAATTGTTTGCGTTAAACTGGACGATGATCGGAA
TTGTATACAATATGGCTATCATTGCTGACATCATGAAACTTTGACAAAAT
GTGAGGACAAACTTTTGCTCGAAAAATATATAGTTATAAATTTTCTGTAC
ATAATAATATGATACAAACTCGTTGTTATTTATCTACATATATATAaaac
acaaaatataaaaaatacaagaaactaaaaaaccTAACGTGACAAATTTT
AGGAGAATCCTTGGTGAGGCAGGAGACTACGTTGAGTCGGGAAGGGTACG
CTCAT Run BLAST on NCBI transcript from alignment at scaffold_375:269951..272348+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062967 ID=TCONS_00062967|Name=TCONS_00062967|organism=Clytia hemisphaerica|type=transcript|length=2398bp|location=Sequence derived from alignment at scaffold_375:269951..272348+ (Clytia hemisphaerica)
tcTGCCAGCTGGCAGAGTGAAATAATAATCAATTTATCAATCGATTTATT
TGACGGTTTCTATGATTCATTTGCTATagttttgatcacgtgatcaaaat
tataaatattcattttttaatgactttGTGACATAATTAACATAATTTAT
TACAAATATGGTGATGGAATGCCTTTAATTGCTTCAGTAATTTAATTGGA
TCATAAAGTTAATGTAATGACGACAGTTCTTAGTCACTCAAGGACGTGTC
GAGTCGCTTTAAGATTGTAAACATTTGAAGCTGAGGAAAGGTGCCTGATT
TTCAACTCTATAAAGCTTATTCAGATGCATGAACATTGATGACACtgaca
accctgtctcacagccccgatggaacttttttcctcagtggggataaaaa
ttcctattgataTCCTAATAGAATATAGAAATTCTATcgtttcaaggtta
aaaaacctAGGGGATGGTTTAGGAGTGCAGTTTTTAAACATGTAATTTCG
attggggatgaaatcaaattcaatttcccaatggggctgaaattcaaggg
tatttttccaccgaagacgaacttttatttttttatttttcagtggGGGT
GGGGTCCCGACGGGTCTGTGACATAGGGATGTACATTGGTTGCTTGCttg
ctttttaacttttttaaattttaaacatattgttttataagaacaaacta
tatgagaacataaggctttaatAGCCAAAATACTAAGGACAAGACGAGAA
CATTTCAAAgctttatggactctaaaatgtctaatttcttaggaaattgc
actaaaatactcataaaatttacgaaattaagaacatcttaagaataatt
ttaggctgaaaacttaaaaagttaaaaacatccgaaggctttagaaactt
tggatgttcttataaaaaaaaggggTAGCAATTTTTCAAACGATGCTTTA
TTAAACAagagtgccttcagaggttcagaacttaaaaaagttgaagattc
ttataaaaagcatcgttgaaaagataatcaaaagcatcgttgaaaagata
atcaaaaGCACTAAAAGTTGTCAAAATCTTTAGGTGCAACAAGTCCAAAA
AGCCGTGGGCTTGAAAGAACATAAACCACGCTctaaaaataatagaaatt
gtaaaataaaactgcgaaaatttctGGAATAAAGCCTGGACATTTTTTCG
AATCTCAACTTAAAATTTTACcactaaaacttgaaaaaatgcGGAAAGGG
TTGAATACACACTTTATTAACAGAATGAAATTTAGAGACCTTTCCACTAA
ATTTTTTGGCAATCTTTCAGACTTTTATTCGCACTTCTTTTTACTGGATG
GGTATGGCTAAAATAAGACTTTGGTTTCACACTTAACCATTTACGTAAAC
TAAATTCAAGGTGCCAAAAAAAGCTGAAGATTTGAGGGTacaatttgaca
aaaatagattttcggcaaatgaaaaattcattattttagattaaattttt
gattttaacacTATACACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAATCAAAACATTATTACATCGAGAAGTTTACA
TAAGAAATTTTCAtggttttattctttttgtagAAACACAACGGAGTTTT
GCGAAGATAATTGACGAAAAATAACGATGCTTCGAAATTTATTGGTGATT
TTCTTGTTATGTTCGTTTGAAGTGGAAATGAATGATGCAGTACCGTTATC
AAAATTATCTAAAATGATGGCTGACCTACCCTTTCGAAGCCGCCATACAC
CGTGTGGGAAAATTGTTTGCGTTAAACTGGACGATGATCGGAATTGTATA
CAATATGGCTATCATTGCTGACATCATGAAACTTTGACAAAATGTGAGGA
CAAACTTTTGCTCGAAAAATATATAGTTATAAATTTTCTGTACATAATAA
TATGATACAAACTCGTTGTTATTTATCTACATATATATAaaacacaaaat
ataaaaaatacaagaaactaaaaaaccTAACGTGACAAATTTTAGGAGAA
TCCTTGGTGAGGCAGGAGACTACGTTGAGTCGGGAAGGGTACGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062967-exon-scaffold_375-1491911889:269951..270240 | TCONS_00062967-exon-scaffold_375-1491911889:269951..270240 | Clytia hemisphaerica | exon |
| TCONS_00062967-exon-scaffold_375-1510915933:269951..270240 | TCONS_00062967-exon-scaffold_375-1510915933:269951..270240 | Clytia hemisphaerica | exon |
| TCONS_00062967-exon-scaffold_375-1575043694:269951..270240 | TCONS_00062967-exon-scaffold_375-1575043694:269951..270240 | Clytia hemisphaerica | exon |
| TCONS_00062967-exon-scaffold_375-1491911889:271884..272348 | TCONS_00062967-exon-scaffold_375-1491911889:271884..272348 | Clytia hemisphaerica | exon |
| TCONS_00062967-exon-scaffold_375-1510915933:271884..272348 | TCONS_00062967-exon-scaffold_375-1510915933:271884..272348 | Clytia hemisphaerica | exon |
| TCONS_00062967-exon-scaffold_375-1575043694:271884..272348 | TCONS_00062967-exon-scaffold_375-1575043694:271884..272348 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_375 | supercontig | scaffold_375:269951..272348 + |
Blast
The following BLAST results are available for this feature:
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