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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062964 ID=TCONS_00062964|Name=TCONS_00062964|organism=Clytia hemisphaerica|type=transcript|length=1169bp
TGTCCTAAACCGCACATAGTGTCATTAAGCCAAGGTAAACAGGTAAATGG
CAGAAAGAATCACCCCCaataccaaaaaaatgttttttcacaaAACAAAT
TTCGATTGAAACTTTGTTTAATGTTTGATAATCATAAGAAAGTACTTCAG
ACGTATTAAATGTCAGGCTTTTATGAAGCAAGCATCGCGCTCTTTTCTCG
ATATATATAATGCACGTGGAGGAATACTGCAGACGGTTGGTCACAGGTga
gtcaaaatttacttttctgaatttttcaaaacaatcttAGTACTAAGTTT
TGTACGATCTTTCATGTATGGTTTTCATTATCAATCAAAGAAGTTCTGGG
TTCTACCGCTGCGAAATACCTCCGGGAATTTAATGATAATAAAAAGTGCA
CGGATCCTAAGCTAATTTTCACCAAGTTGGCTTCCAATCGAGTTTTTACA
ACGTAAAATATGTgtaactttatttttattttggttgacAATTCGGTTTT
TGAAGAATATACAGGAAAATCTAAGCAAAAAGCCCTCActtcaaaagtca
aatttttgaaggTTCGTGGAAAAACAAACATTAAAATGTTAACATGGTGG
TCAAAAAGAGTTTTAGAATGTCAGTGAATTTGAAAGAATGATTTGGCTAA
TAATTGTTTGCAAAACAGTGCAGTGGCCCGTTCAAAGAGAATTTGTGATG
TctgAAACACAACGGAGTTTTGCGAAGATAATTGACGAAAAATAACGATG
CTTCGAAATTTATTGGTGATTTTCTTGTTATGTTCGTTTGAAGTGGAAAT
GAATGATGCAGTACCGTTATCAAAATTATCTAAAATGATGGCTGACCTAC
CCTTTCGAAGCCGCCATACACCGTGTGGGAAAATTGTTTGCGTTAAACTG
GACGATGATCGGAATTGTATACAATATGGCTATCATTGCTGACATCATGA
AACTTTGACAAAATGTGAGGACAAACTTTTGCTCGAAAAATATATAGTTA
TAAATTTTCTGTACATAATAATATGATACAAACTCGTTGTTATTTATCTA
CATATATATAaaacacaaaatataaaaaatacaagaaactaaaaaaccTA
ACGTGACAAATTTTAGGAGAATCCTTGGTGAGGCAGGAGACTACGTTGAG
TCGGGAAGGGTACGCTCAT Run BLAST on NCBI transcript from alignment at scaffold_375:269121..272348+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062964 ID=TCONS_00062964|Name=TCONS_00062964|organism=Clytia hemisphaerica|type=transcript|length=3228bp|location=Sequence derived from alignment at scaffold_375:269121..272348+ (Clytia hemisphaerica)
TGTCCTAAACCGCACATAGTGTCATTAAGCCAAGGTAAACAGGTAAATGG
CAGAAAGAATCACCCCCaataccaaaaaaatgttttttcacaaAACAAAT
TTCGATTGAAACTTTGTTTAATGTTTGATAATCATAAGAAAGTACTTCAG
ACGTATTAAATGTCAGGCTTTTATGAAGCAAGCATCGCGCTCTTTTCTCG
ATATATATAATGCACGTGGAGGAATACTGCAGACGGTTGGTCACAGGTga
gtcaaaatttacttttctgaatttttcaaaacaatcttAGTACTAAGTTT
TGTACGATCTTTCATGTATGGTTTTCATTATCAATCAAAGAAGTTCTGGG
TTCTACCGCTGCGAAATACCTCCGGGAATTTAATGATAATAAAAAGTGCA
CGGATCCTAAGCTAATTTTCACCAAGTTGGCTTCCAATCGAGTTTTTACA
ACGTAAAATATGTgtaactttatttttattttggttgacAATTCGGTTTT
TGAAGAATATACAGGAAAATCTAAGCAAAAAGCCCTCActtcaaaagtca
aatttttgaaggTTCGTGGAAAAACAAACATTAAAATGTTAACATGGTGG
TCAAAAAGAGTTTTAGAATGTCAGTGAATTTGAAAGAATGATTTGGCTAA
TAATTGTTTGCAAAACAGTGCAGTGGCCCGTTCAAAGAGAATTTGTGATG
TctggtaaaaaattatattatgtATTTCTTATTCCGCAATGATTTTACAG
AGCTAGCCCAGCTGGcagacaacgttgtttcaacgtttatataatgttca
taacgtccatataacgttagatgaacgttgtcTGCCAGCTGGCAGAGTGA
AATAATAATCAATTTATCAATCGATTTATTTGACGGTTTCTATGATTCAT
TTGCTATagttttgatcacgtgatcaaaattataaatattcattttttaa
tgactttGTGACATAATTAACATAATTTATTACAAATATGGTGATGGAAT
GCCTTTAATTGCTTCAGTAATTTAATTGGATCATAAAGTTAATGTAATGA
CGACAGTTCTTAGTCACTCAAGGACGTGTCGAGTCGCTTTAAGATTGTAA
ACATTTGAAGCTGAGGAAAGGTGCCTGATTTTCAACTCTATAAAGCTTAT
TCAGATGCATGAACATTGATGACACtgacaaccctgtctcacagccccga
tggaacttttttcctcagtggggataaaaattcctattgataTCCTAATA
GAATATAGAAATTCTATcgtttcaaggttaaaaaacctAGGGGATGGTTT
AGGAGTGCAGTTTTTAAACATGTAATTTCGattggggatgaaatcaaatt
caatttcccaatggggctgaaattcaagggtatttttccaccgaagacga
acttttatttttttatttttcagtggGGGTGGGGTCCCGACGGGTCTGTG
ACATAGGGATGTACATTGGTTGCTTGCttgctttttaacttttttaaatt
ttaaacatattgttttataagaacaaactatatgagaacataaggcttta
atAGCCAAAATACTAAGGACAAGACGAGAACATTTCAAAgctttatggac
tctaaaatgtctaatttcttaggaaattgcactaaaatactcataaaatt
tacgaaattaagaacatcttaagaataattttaggctgaaaacttaaaaa
gttaaaaacatccgaaggctttagaaactttggatgttcttataaaaaaa
aggggTAGCAATTTTTCAAACGATGCTTTATTAAACAagagtgccttcag
aggttcagaacttaaaaaagttgaagattcttataaaaagcatcgttgaa
aagataatcaaaagcatcgttgaaaagataatcaaaaGCACTAAAAGTTG
TCAAAATCTTTAGGTGCAACAAGTCCAAAAAGCCGTGGGCTTGAAAGAAC
ATAAACCACGCTctaaaaataatagaaattgtaaaataaaactgcgaaaa
tttctGGAATAAAGCCTGGACATTTTTTCGAATCTCAACTTAAAATTTTA
CcactaaaacttgaaaaaatgcGGAAAGGGTTGAATACACACTTTATTAA
CAGAATGAAATTTAGAGACCTTTCCACTAAATTTTTTGGCAATCTTTCAG
ACTTTTATTCGCACTTCTTTTTACTGGATGGGTATGGCTAAAATAAGACT
TTGGTTTCACACTTAACCATTTACGTAAACTAAATTCAAGGTGCCAAAAA
AAGCTGAAGATTTGAGGGTacaatttgacaaaaatagattttcggcaaat
gaaaaattcattattttagattaaatttttgattttaacacTATACACNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
TCAAAACATTATTACATCGAGAAGTTTACATAAGAAATTTTCAtggtttt
attctttttgtagAAACACAACGGAGTTTTGCGAAGATAATTGACGAAAA
ATAACGATGCTTCGAAATTTATTGGTGATTTTCTTGTTATGTTCGTTTGA
AGTGGAAATGAATGATGCAGTACCGTTATCAAAATTATCTAAAATGATGG
CTGACCTACCCTTTCGAAGCCGCCATACACCGTGTGGGAAAATTGTTTGC
GTTAAACTGGACGATGATCGGAATTGTATACAATATGGCTATCATTGCTG
ACATCATGAAACTTTGACAAAATGTGAGGACAAACTTTTGCTCGAAAAAT
ATATAGTTATAAATTTTCTGTACATAATAATATGATACAAACTCGTTGTT
ATTTATCTACATATATATAaaacacaaaatataaaaaatacaagaaacta
aaaaaccTAACGTGACAAATTTTAGGAGAATCCTTGGTGAGGCAGGAGAC
TACGTTGAGTCGGGAAGGGTACGCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062964-exon-scaffold_375-1491911889:269121..269824 | TCONS_00062964-exon-scaffold_375-1491911889:269121..269824 | Clytia hemisphaerica | exon |
| TCONS_00062964-exon-scaffold_375-1510915933:269121..269824 | TCONS_00062964-exon-scaffold_375-1510915933:269121..269824 | Clytia hemisphaerica | exon |
| TCONS_00062964-exon-scaffold_375-1575043694:269121..269824 | TCONS_00062964-exon-scaffold_375-1575043694:269121..269824 | Clytia hemisphaerica | exon |
| TCONS_00062964-exon-scaffold_375-1491911889:271884..272348 | TCONS_00062964-exon-scaffold_375-1491911889:271884..272348 | Clytia hemisphaerica | exon |
| TCONS_00062964-exon-scaffold_375-1510915933:271884..272348 | TCONS_00062964-exon-scaffold_375-1510915933:271884..272348 | Clytia hemisphaerica | exon |
| TCONS_00062964-exon-scaffold_375-1575043694:271884..272348 | TCONS_00062964-exon-scaffold_375-1575043694:271884..272348 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_375 | supercontig | scaffold_375:269121..272348 + |
Blast
The following BLAST results are available for this feature:
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