TCONS_00062953 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062953
Unique NameTCONS_00062953
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062953 ID=TCONS_00062953|Name=TCONS_00062953|organism=Clytia hemisphaerica|type=transcript|length=1463bp
GACACAGACAAGAACGAGTATCAACCGTATCCATTAATCTATAAGATTAC
AAGACTTTACTTTTGATTTTCGCTCTCCTCGACGCGTCAATGCCAAATGA
AGGTGAAACTGATGGTTGTCATTTTTATTTCCCTCATTGGAATTGTTTCT
ACGGAACCTGACCAAACGGGCGCCGTAGTTGGCATCGAGGAGCCTCAAGG
GACATGGAGTTCCTGGTCATTGGCTGTGGGTTGTCATAGTTACAATATAT
CCGGACCATCAGTAAAGAAATACACACGGACGTGTTCCGGAGGAGTTTGT
GCGGAGGGAAATGATGTCTATTTGGATTACAATTGTCCATCTGGTTattt
aagcCCTGGTTTTGCACTTAATACCAGCGATCCAGACAGAAAGCAGTGTA
CACTATGTCAAGCTAATAAAGAACACCAGCAATTCTATGACGGCCTATAT
TCTTTAAGTCTACCATTTATGAGATTCAACCgtcgaaaattcatcaaaat
ctttgttaAATCTAAACACGCGCCTAATGGACAACCAGATGTTGAATTCA
GGAGTTGGCCATCAAATTCTTTAAACAATGACTACAGGTTACTACGCAAC
AACATGCCTTCCTGGAATAATAATTTCCCCTGGAACTTCGATCGGTTTAA
ACGATGGGCTACACAATTTGTATTCGACCGGTTTGAATCTAATGTGCCAG
CATTTAAAATTGGGAACTTAACATCTGTCGGGAATACGTTTAAAATGAAC
ATCAAAGGACAGGTTACGTACAATCCACATCCGGACGCAGAAACATACGT
CAGTACTGGATTTTATCTCTACGACACTGATGAAGAAACGATTTCCATTA
TGCAAAACAAACGGAAAAAAGTTCCTTCGACCGGAAACTCGCCATTAATC
CATCAGTTGGAAGAATTGGGGCCACGTCATCTTTCCGGTCATCATATACG
GCCGGGgCTTCGACTTCGAGCAACAGTGAGGTTTGTTTTCCGTGGCAACC
AGCAAACAACCAATATATTCATCAAAGAGATGGTTCCAAACTTGTATTTT
CGCTTGCTTAACATTTCTTTCTTCCAAACGTACAGACACCCTTTATCGAA
TGATCAGAATCTTTACAGAAATTCTACTTATCTTTCTCACGATGCgacga
aaaatcattttttcgcTTATaacAAATACTTTGATCCAGCCTATGCACCG
TATAATTGGATAGAACCTACAAAGGAATATATGAACTTAATGACTGATTT
CCACGATTCAACCTACATTACCAGACCATTGAATACAATCGTAGCAGACT
TTAATTATTGTTGGAACAAAGAAGGTTGCAACGAAACAAATCCTAATCAA
TTAACGGTCAAAAGAGACCGTGGATTCTTTTCTACCATACCTACAGGCTC
TGGATTTCCTTTAAGTAAGTACATTTTAGCTTCAAGTGTTACCTTAAACC
CTTTAAATACTAG
Run BLAST on NCBI

transcript from alignment at scaffold_375:119921..125715+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062953 ID=TCONS_00062953|Name=TCONS_00062953|organism=Clytia hemisphaerica|type=transcript|length=5795bp|location=Sequence derived from alignment at scaffold_375:119921..125715+ (Clytia hemisphaerica)
GACACAGACAAGAACGAGTATCAACCGTATCCATTAATCTATAAGATTAC
AAGACTTTACTTTTGATTTTCGCTCTCCTCGACGCGTCAATGCCAAATGA
AGGTGAAACTGATGGTTGTCATTTTTATTTCCCTCATTGGAATTGGTAAG
ATaatatcttgatttttttatttttgttttcaattttaacctaaaagcgg
cgttaatcTTTCATCATTATTTCTCAAGTTAAAATGATTTTAGGTAAGAT
TCGAAAAGGAAAATTATCGATTGTTTTattccatatttaaaacttcatCA
GTGAAATATTAATatgtttaaaaatcaaaattctatggaattttcaacag
tttactactgaaaaatcatattttaatgtaaattttagtcattatttttt
actaatttgaagcatgagtagtcatttttagaaattctgGCGTTATTAAC
Ggtcctaattggcgtaagcccaaaattaggctgtggcataataagggccg
gcgtaaaatggaccgataaggtaattaacaaaaaatatgtAAAGATATAA
TTGAGCTTTAGTGAATACCATATTTCTTTCCAAAACATAACCTCGAATAT
CTTTGTTTTAAGTTTCTACGGAACCTGACCAAACGGGCGCCGTAGTTGGC
ATCGAGGAGCCTCAAGGGACATGGAGTTCCTGGTCATTGGCTGTGGGTTG
TCATAGTTACAATATATCCGGACCATCAGTAAAGAAATACACACGGACGT
GTTCCGGAGGAGTTTGTGCGGAGGGAAATGATGTCTATTTGGATTACAAT
TGTCCATCTGGTTGTAAGTTCCTTTTTCTCTAGATTAAAGgttcaataaa
aaattcaaaacttgaTCCTAGTCCCAAAAATTGATGCAAGTGACTTTTAA
ATTCACACATGGGATGTCATGGGATAAAGTTTTGCAGAGAATTTGAGCGT
CTTCCGCCGCAAACTTAAGTcccaataaaaatttgaacacGCGTTGGAtt
gtagacgatgctatcgtccgtataatatgttattatgatataacatagtt
tgtatattataaaacgtaatatgtttcgcggcggatagagtctgtgttta
cgacAACGGCCACTCCCGTAAAAAAATTCCcctcttcacgtttgttcctt
ttttagatgaaactcgtcttagactatagcatagtctagttGGATTGCTG
ATTGGTGAAATTAAATTAACgcgaaattttagaaattaagttttctattt
tgaaaattgccGTTGTCAGTTGATTTTTTGCTCATCATTTGTGAGATAaa
atccacgcaaaatttttcaaaacgcgGATTCGCGAAAATCAATACAGATT
TTTTTTGTTCgggaaaatttttcgaatttaagTCAAAAATTCTGCAAATA
TTTAAATCTCAAACTAATGATGACTTGCAGTATTTCATCTTTTCATGAAT
TTATTCGTTatcaattttttagatttaagcCCTGGTTTTGCACTTAATAC
CAGCGATCCAGACAGAAAGCAGTGTACACTATGTCAAGCTAATAAAGAAC
ACCAGCAATTCTATGACGGCCTATATTCTTTAAGTCTACCATTTATGAGA
TTCAACCgtcgaaaattcatcaaaatctttgttaAATCTAAACACGCGCC
TAATGGACAACCAGGTATGTTATGTTTGctaattcaaaaactttttattt
cacCAATCTCTTTTTGACCTCTTTGGTCTGATCAACTGCTCTATCTACCA
ACACCACATTATATACCTCTATGCGGAGAAACAGGCTTTGCTTTTAaaag
gttaaaggttttgtttttataaaaataagagcgatatcatttgcttaaaa
ctcatcaattttgatttacaagctttttcacattgtattgacacgtatgt
ggagcaagattggtcagaaaggggaggaaaatataaacattttttcGCTT
ATGTCAGCATAAtgtaacaataggcagacactgtcctgatatgaaatatg
tgtctgatatgaaacgggaacacttatgtaaaaataaaacctttaagtgt
TGTCAGCTCAAAGTGATCTCCTTATCTAGTAAGCTCGTACCCACTCCCTT
TAAGTTCGTTTATTTATCATTCTGGTAGCCCTCACGAAAGGACCACGTCT
TTTCAGTAAGATTAAAAAGTAGTACTAGTTGCTCTTGGTATCGGATCGGG
ATCGGGATCTACAATCCAGGACTTAATTATAGAATAAAACATACTTTTAA
AACCCCCTTCCCCCCCTTATAAAATTTTGAGAGAGAGGTTCAGGTTGCTG
GGAAGTTTGTTGGGTCAACATTGTACTAAGGGGGGGAGGAGAGGGGAAAA
TGCATTTTTCAGGGGTtggttcattctttttttgtcCCGGTTTTTCCCAT
GTGGttagagaaattaaaattttgatgataccGATTCTTTTAAATTCTCA
GATGTTGAATTCAGGAGTTGGCCATCAAATTCTTTAAACAATGACTACAG
GTTACTACGCAACAACATGCCTTCCTGGAATAATAATTTCCCCTGGAACT
TCGATCGGTTTAAACGATGGGCTACACAATTTGTATTCGACCGGTTTGAA
TCTAATGTGCCAGCATTTAAAATTGGGAACTTAACATCTGTCGGGAATAC
GTTTAAAATGAACATCAAAGGACAGGTAAAGACAGTATactcccttgaag
atcgaattagcgAGGCTCAACTGTACATACATTTTAaaactcattcaatt
tttgcCTGACGACTAAATTTAAGAGAAATTATGGTTTATTTTGGAAACCT
ATACCAAACCAATTCTATAATTTACAGTCGTAGACCTTGCTGTATAACAT
AACAGGTTTAAAAGAACGTCACTAGCAACGGTTTTGCCAAGATTACCCCC
ATTTACCTAAAATTGTTATTTTATGAAAACTATCTTTGAGTCTGCATATG
AGAGTAATGCTTAATGGGGGAGGTGAAACATGTTTCCGAAGGTTAAAAAT
CTTATTTGCCAGCGGGGTAAAAAACTGAATGTTTTCTACAAGAGTCAAAT
AACTCTATGTAAATTCAAGGTTTTATATGCTTACCAGAAGACCTAGTATC
GTTAAGAAACAGAACTGCCCTCCTCTGCTACGTCTAGTGATGTAGGAAAC
CTTTTAAACTGGGTAATCGAATCTCTCTAtgattcgaagaaaattcttgc
tctcttgaagatcgaattagagagaaagtTAACTTTACCTATTTACTCAC
ATACAGGTTACGTACAATCCACATCCGGACGCAGAAACATACGTCAGTAC
TGGATTTTATCTCTACGACACTGATGAAGAAACGATTTCCATTATGCAAA
ACAAACGGAAAAAAGTTCCTTCGACCGGAAACTCGCCATTAATCCATCAG
TTGGAAGAATTGGGGCCACGTCATCTTTCCGGTCATCATATACGGCCGGG
GTGAGTTGATGACACGCCAAAAAGCGTTGATAGGGTGTGTTAGTCCTGAG
AGacacaatagcgagtttatctatttgcacttttgaggatgCATGAGTGA
cggaagcgatttggaataacccgaaTTTTTGACATGCTAAACCGAGAACT
ATAAAAGTACTTGTTTACAGTACTCCTCAGTCAGTCACGATtagacaaat
cagaagctagTCGTCTCCATTGCAAACAAACTCACATACACAAACTCACT
TATATCCTAGAAACGTCCGTGCATTCGGCCGAAGTAAATCGGTCTTCGGT
ACctttcttcaaaaatgttgtaaaTATGGTCACCTGGAAACTTTGTTGTC
AAATCCAGGGAAAAGTTACGTAAAGGCACgtaaatgtaaaaataaacacG
AACTCCGTTCTTGAGAGCTGATGCCAATAATTTTACGTCTGATCTCCTGA
GTTCAaacaaattttagattttaacaTTCCtgtttattctttattttcag
gCTTCGACTTCGAGCAACAGTGAGGTTTGTTTTCCGTGGCAACCAGCAAA
CAACCAATATATTCATCAAAGAGATGGTTCCAAACTTGTATTTTCGCTTG
CTTAACATTTCTTTCTTCCAAACGTACAGACACCCTTTATCGAATGATCA
GAATCTTTACAGAAATTCTACTTATCTTTCTCACGATGCgacgaaaaatc
attttttcgcTTATGTAAGTTgctgttacacgtttttttataagaacaaa
ctatataagaacacaaggcttcaatggctaaaatattaagaacaagttaa
gaatatttgtgGCCTTAAAGTTTGACTTGGCCAGCCCAATTTGTATGGAT
ATGATTCGTTGTTTTATGGGACGGATAGtcctcaaaatttaaaaaatcga
aaatttctaCTTCCGAAAAGAATCGAGTCCATTGAAAATGGCATGtcact
aaaaagaaaataatcgGTTTAAATTATAAGTAAGTAGATTGTATTTGTCG
ATATAAGCGAGATGAGAAGAGCGATCACACTCAGacataatagcgagttt
atgtatcggaggatatcgaggttGATGGTAAGTAAAGTCGACGCAAAACA
AAGTTGATAATTAATGTAAGGCTCCATACCGCTTTTACCTACCTAAACAG
ACAACGGTGTTTTGGtatttttaccgtcgtcgagctaAGGGGAAGGCAAT
TTTGATGACATGTCAACTTTATACCGActccttcgatttatctcgaatac
ataaaatCGTTAATGCTAAACTAAGAAAGTGACCGCTTGCTAAAGTTaca
agattaaaaaaaagtaagCTCAATTCTATAAATACTTGAccagaattttt
ctttttctagagATTTTCCTCTATCCCTatccgaggggtaaatcacttcg
aaaaaagcgtacgaaatgatttttgatttttgatttttttgtgatttttt
gattttttctgtgattttttgattttttttttgatttttttgtgaatttt
tgattttttgtgattttttgatttttctgtgattttttttgagatttttt
tattttttttttatttttctgtgatttttttgtgattttttttggatttt
tttctgtgatttttttatttttttgtgattttttgatttttctgtgattt
ttttgtgatttttttatttttctgtgattttttcattttttttttgattt
ttttgtgattttttgatttttttgtgatttttctaagaagtgtacgagat
tttttcgagtaatttacccctcgTCCCCATCAGAGCTtataggttttgtt
tttaaataagaatgatatcgtttgcttactcatcaattatAATTtgtaag
ctttttcacattggattggcgcggatgtggagcaagattagtcaataagt
agaaaataaaaacatttttttgcttatatcagcataataacGATAGGCAG
ACAATGTTccaatatgaaatatgtgtctgatatgaaacgggaacacttac
ctttaaactcaatgtttgatcggtatattttatattttttttatattttc
agaacAAATACTTTGATCCAGCCTATGCACCGTATAATTGGATAGAACCT
ACAAAGGAATATATGAACTTAATGACTGATTTCCACGATTCAACCTACAT
TACCAGACCATTGAATACAATCGTAGCAGACTTTAATTATTGTTGGAACA
AAGAAGGTTGCAACGAAACAAATCCTAATCAATTAACGGTCAAAAGAGAC
CGTGGATTCTTTTCTACCATACCTACAGGCTCTGGATTTCCTTTAAGTAA
GTACATTTTAGCTTCAAGTGTTACCTTAAACCCTTTAAATACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039432XLOC_039432Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062953-exon-scaffold_375-1491911889:119921..120065TCONS_00062953-exon-scaffold_375-1491911889:119921..120065Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1510915933:119921..120065TCONS_00062953-exon-scaffold_375-1510915933:119921..120065Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1575043694:119921..120065TCONS_00062953-exon-scaffold_375-1575043694:119921..120065Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1491911889:120533..120733TCONS_00062953-exon-scaffold_375-1491911889:120533..120733Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1510915933:120533..120733TCONS_00062953-exon-scaffold_375-1510915933:120533..120733Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1575043694:120533..120733TCONS_00062953-exon-scaffold_375-1575043694:120533..120733Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1491911889:121393..121584TCONS_00062953-exon-scaffold_375-1491911889:121393..121584Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1510915933:121393..121584TCONS_00062953-exon-scaffold_375-1510915933:121393..121584Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1575043694:121393..121584TCONS_00062953-exon-scaffold_375-1575043694:121393..121584Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1491911889:122372..122595TCONS_00062953-exon-scaffold_375-1491911889:122372..122595Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1510915933:122372..122595TCONS_00062953-exon-scaffold_375-1510915933:122372..122595Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1575043694:122372..122595TCONS_00062953-exon-scaffold_375-1575043694:122372..122595Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1491911889:123177..123370TCONS_00062953-exon-scaffold_375-1491911889:123177..123370Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1510915933:123177..123370TCONS_00062953-exon-scaffold_375-1510915933:123177..123370Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1575043694:123177..123370TCONS_00062953-exon-scaffold_375-1575043694:123177..123370Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1491911889:123871..124084TCONS_00062953-exon-scaffold_375-1491911889:123871..124084Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1510915933:123871..124084TCONS_00062953-exon-scaffold_375-1510915933:123871..124084Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1575043694:123871..124084TCONS_00062953-exon-scaffold_375-1575043694:123871..124084Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1491911889:125423..125715TCONS_00062953-exon-scaffold_375-1491911889:125423..125715Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1510915933:125423..125715TCONS_00062953-exon-scaffold_375-1510915933:125423..125715Clytia hemisphaericaexon
TCONS_00062953-exon-scaffold_375-1575043694:125423..125715TCONS_00062953-exon-scaffold_375-1575043694:125423..125715Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:119921..125715 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.650304	0.577929	0.692831	0.219377	0.152612	0.120596	0.241252	0.12746	0.214567	0.0295307	0.339739	0.258755	0.835592	0.550678	1.36552	0.984662	0.785822	0.659389	11.7589	17.8253	0.368901	0.731203	0.656121	0.653705	0.532522	0.474459	0.603776	0.579335	0.285954	0.569733
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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