TCONS_00062943 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062943
Unique NameTCONS_00062943
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1642

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062943 ID=TCONS_00062943|Name=TCONS_00062943|organism=Clytia hemisphaerica|type=transcript|length=1642bp
TAAATTTTAGGATGATGATTTAATTCAGATTCTATCCCcaagtcaatatt
tttttattttcagcattatatattgtttacaaaaatgtcaaatatattTG
TGCAAGGAGCAAGCCGTGGACTGGGCTTTACTTTTGttcaatcttttttg
aaaaatcctcaaaatatGGTATTTGCATCAGCAAGAACACTAGACAAAGC
AGGTGGCTCTGGTATAAGTCTTGTTGATTTGAAAAAGTCCTACCCTGATA
ACCTTCAGCTTATTGAAATGGATGTCACCAAAGAGGAAAATGTTGCTAGC
GCAGCTGCTGAAGTGAAGGAAAAGGCTGGTCGACTAGAACTTTTGATTAA
CTGTAGTGCAATTTTACATCCTACGGGAAGAGGAGAGACCAAACTAGCAG
ACATCAAACCTGAGTATCTTCATGAAATCTTTGCTGTAAACACCATTTCC
CCATTAATAATGGCAAAGCATTTTGCTAAGATACTTCAAAAAGGGAATGG
ATCTATTGGATCTGACGAGTTTCAAAATAGCAAAGAATTGAATCATGCTG
CAGTTATTGCAAATTTGTCAGCTAGAATTGGATCAATTGATGGTAATAAA
CTTGGTGGATGGTATTCTTATAGAATGTCAAAAACAGCTTTGAATATGGG
AAACAAGACTTTAGCTATAGAATTAGCCAGAGGAAAAAATCGTGTGGCAA
CAATCAATCTCCACCCTGGCACTGTTAACACAGATTTAACAAGACCCTAC
CACAGAGGTATCCCAAAGGACAAACTTTTTACCCCAGAGTATAGTGTCGA
AATGCTTCTAAAAGTGATACAAAGTGCTAGTATGAAAAACACAGGCAGCT
TTTTTGCTTATGATGGTACAGAGATAGAATGGTAATCTGCCTTGGCTGGA
ATGACAGTTTGTACCTTTGAATTTATATACTAGATTCTTTTTTATCCata
ttgagaaaaaagaaatggATTAATTATATCTAAtatttttgaagactttt
tttagATTGAATGAATTATTTATTGTCTATTGTATGTATATAATTATTGT
AATGTTTTACAGGTTAGcaactttattttgaaaagcTGTTGTCCATCCTG
TATTGATAAGCAGGTAAAAAGTTTTTCGAATGCTTATCAAGTGTCAGCAA
TTACAACACTATTTTTTCAGCCACATAGGCAGCTGAGCTTTAAGATGCTA
CTTTCCAGGCAAAGCCAACAATGTTGGTGTACtctcaaaaaacaattttt
atataaatGCGTGTAATGATATTGATTGCTATATGTCTAAATTGAAGCAA
CTATTGTCTATTGGAGTGTTGAATTTGCTAACATCACACATCCCTCCTCA
TGTATTCATTGCCTTTTGGATCATAATATATTATGTGCTAACAATTTTAG
GTTTGGGAATCATGCTATTGTTTAAACCCTTTAAGCATTGTGATTGACCT
TCTAGTATCAACtgctttgatttcttttttatgaaactTAATGAATTCCC
TTAAGGTCTACATACACATACATAATATTTTGCTGAATgctggcaatata
ttgaaaaggtgttcgccatataccgggtgcgccacaaaaaagtttctctc
tttgaaactaattttctcgaaattgaaaatttttaaaagaac
Run BLAST on NCBI

protein sequence of TCONS_00062943-protein

>TCONS_00062943-protein ID=TCONS_00062943-protein|Name=TCONS_00062943-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MSNIFVQGASRGLGFTFVQSFLKNPQNMVFASARTLDKAGGSGISLVDLK
KSYPDNLQLIEMDVTKEENVASAAAEVKEKAGRLELLINCSAILHPTGRG
ETKLADIKPEYLHEIFAVNTISPLIMAKHFAKILQKGNGSIGSDEFQNSK
ELNHAAVIANLSARIGSIDGNKLGGWYSYRMSKTALNMGNKTLAIELARG
KNRVATINLHPGTVNTDLTRPYHRGIPKDKLFTPEYSVEMLLKVIQSASM
KNTGSFFAYDGTEIEW
Run BLAST on NCBI

transcript from alignment at scaffold_375:24030..25843+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062943 ID=TCONS_00062943|Name=TCONS_00062943|organism=Clytia hemisphaerica|type=transcript|length=1814bp|location=Sequence derived from alignment at scaffold_375:24030..25843+ (Clytia hemisphaerica)
TAAATTTTAGGATGATGATTTAATTCAGATTCTATCCCcaagtcaatatt
tttttattttcagcattatatattgtttacaaaaatgtcaaatatattTG
TGCAAGGAGCAAGCCGTGGACTGGGCTTTACTTTTGttcaatcttttttg
aaaaatcctcaaaatatGGTATTTGCATCAGCAAGAACACTAGACAAAGC
AGGTGGCTCTGGTATAAGTCTTGTTGATTTGAAAAAGTCCTACCCTGATA
ACCTTCAGCTTATTGAAATGGATGTCACCAAAGAGGAAAATGTTGCTAGC
GCAGCTGCTGAAGTGAAGGAAAAGGCTGGTCGACTAGAACTTTTGATTAA
CTGTAGTGCAATTTTACATCCTACGGGAAGAGGAGAGACCAAACTAGCAG
ACATCAAACCTGAGTATCTTCATGAAATCTTTGCTGTAAACACCATTTCC
CCATTAATAATGGCAAAGCATTTTGCTAAGATACTTCAAAAAGGGAATGG
ATCTATTGGATCTGACGAGTTTCAAAATAGCAAAGAATTGAATCATGCTG
CAGTTATTGCAAATTTGTCAGCTAGAATTGGATCAATTGATGGTAATAAA
CTTGGTGGATGGTATTCTTATAGAATGTCAAAAACAGCTTTGAATATGGG
AAACAAGTAAGTATTCTTGAATATTCACATCATTCTATTTGTCTATCATT
CTATTTTCCTTTACACTTTATACTTTGAACTTCTCCAATATATTGCGGCC
CAGTCCGTctagatttttttctctaaagTTTTTTCAAGATCTTTCATAAT
GTTGTATTTAAAATGAATTATCCTTTAGGACTTTAGCTATAGAATTAGCC
AGAGGAAAAAATCGTGTGGCAACAATCAATCTCCACCCTGGCACTGTTAA
CACAGATTTAACAAGACCCTACCACAGAGGTATCCCAAAGGACAAACTTT
TTACCCCAGAGTATAGTGTCGAAATGCTTCTAAAAGTGATACAAAGTGCT
AGTATGAAAAACACAGGCAGCTTTTTTGCTTATGATGGTACAGAGATAGA
ATGGTAATCTGCCTTGGCTGGAATGACAGTTTGTACCTTTGAATTTATAT
ACTAGATTCTTTTTTATCCatattgagaaaaaagaaatggATTAATTATA
TCTAAtatttttgaagactttttttagATTGAATGAATTATTTATTGTCT
ATTGTATGTATATAATTATTGTAATGTTTTACAGGTTAGcaactttattt
tgaaaagcTGTTGTCCATCCTGTATTGATAAGCAGGTAAAAAGTTTTTCG
AATGCTTATCAAGTGTCAGCAATTACAACACTATTTTTTCAGCCACATAG
GCAGCTGAGCTTTAAGATGCTACTTTCCAGGCAAAGCCAACAATGTTGGT
GTACtctcaaaaaacaatttttatataaatGCGTGTAATGATATTGATTG
CTATATGTCTAAATTGAAGCAACTATTGTCTATTGGAGTGTTGAATTTGC
TAACATCACACATCCCTCCTCATGTATTCATTGCCTTTTGGATCATAATA
TATTATGTGCTAACAATTTTAGGTTTGGGAATCATGCTATTGTTTAAACC
CTTTAAGCATTGTGATTGACCTTCTAGTATCAACtgctttgatttctttt
ttatgaaactTAATGAATTCCCTTAAGGTCTACATACACATACATAATAT
TTTGCTGAATgctggcaatatattgaaaaggtgttcgccatataccgggt
gcgccacaaaaaagtttctctctttgaaactaattttctcgaaattgaaa
atttttaaaagaac

Coding sequence (CDS) from alignment at scaffold_375:24030..25843+

>TCONS_00062943 ID=TCONS_00062943|Name=TCONS_00062943|organism=Clytia hemisphaerica|type=CDS|length=1602bp|location=Sequence derived from alignment at scaffold_375:24030..25843+ (Clytia hemisphaerica)
atgtcaaatatattTGTGCAAGGAGCAAGCCGTGGACTGGGCTTTACTTT
TGttcaatcttttttgaaaaatcctcaaaatatGGTATTTGCATCAGCAA
GAACACTAGACAAAGCAGGTGGCTCTGGTATAAGTCTTGTTGATTTGAAA
AAGTCCTACCCTGATAACCTTCAGCTTATTGAAATGGATGTCACCAAAGA
GGAAAATGTTGCTAGCGCAGCTGCTGAAGTGAAGGAAAAGGCTGGTCGAC
TAGAACTTTTGATTAACTGTAGTGCAATTTTACATCCTACGGGAAGAGGA
GAGACCAAACTAGCAGACATCAAACCTGAGTATCTTCATGAAATCTTTGC
TGTAAACACCATTTCCCCATTAATAATGGCAAAGCATTTTGCTAAGATAC
TTCAAAAAGGGAATGGATCTATTGGATCTGACGAGTTTCAAAATAGCAAA
GAATTGAATCATGCTGCAGTTATTGCAAATTTGTCAGCTAGAATTGGATC
AATTGATGGTAATAAACTTGGTGGATGGTATTCTTATAGAATGTCAAAAA
CAGCTTTGAATATGGGAAACAAGACTTTAGCTATAGAATTAGCCAGAGGA
AAAAATCGTGTGGCAACAATCAATCTCCACCCTGGCACTGTTAACACAGA
TTTAACAAGACCCTACCACAGAGGTATCCCAAAGGACAAACTTTTTACCC
CAGAGTATAGTGTCGAAATGCTTCTAAAAGTGATACAAAGTGCTAGTATG
AAAAACACAGGCAGCTTTTTTGCTTATGATGGTACAGAGATAGAATGGTA
AatgtcaaatatattTGTGCAAGGAGCAAGCCGTGGACTGGGCTTTACTT
TTGttcaatcttttttgaaaaatcctcaaaatatGGTATTTGCATCAGCA
AGAACACTAGACAAAGCAGGTGGCTCTGGTATAAGTCTTGTTGATTTGAA
AAAGTCCTACCCTGATAACCTTCAGCTTATTGAAATGGATGTCACCAAAG
AGGAAAATGTTGCTAGCGCAGCTGCTGAAGTGAAGGAAAAGGCTGGTCGA
CTAGAACTTTTGATTAACTGTAGTGCAATTTTACATCCTACGGGAAGAGG
AGAGACCAAACTAGCAGACATCAAACCTGAGTATCTTCATGAAATCTTTG
CTGTAAACACCATTTCCCCATTAATAATGGCAAAGCATTTTGCTAAGATA
CTTCAAAAAGGGAATGGATCTATTGGATCTGACGAGTTTCAAAATAGCAA
AGAATTGAATCATGCTGCAGTTATTGCAAATTTGTCAGCTAGAATTGGAT
CAATTGATGGTAATAAACTTGGTGGATGGTATTCTTATAGAATGTCAAAA
ACAGCTTTGAATATGGGAAACAAGACTTTAGCTATAGAATTAGCCAGAGG
AAAAAATCGTGTGGCAACAATCAATCTCCACCCTGGCACTGTTAACACAG
ATTTAACAAGACCCTACCACAGAGGTATCCCAAAGGACAAACTTTTTACC
CCAGAGTATAGTGTCGAAATGCTTCTAAAAGTGATACAAAGTGCTAGTAT
GAAAAACACAGGCAGCTTTTTTGCTTATGATGGTACAGAGATAGAATGGT
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039429XLOC_039429Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062943-proteinTCONS_00062943-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062943-exon-scaffold_375-1491911889:24030..24685TCONS_00062943-exon-scaffold_375-1491911889:24030..24685Clytia hemisphaericaexon
TCONS_00062943-exon-scaffold_375-1510915933:24030..24685TCONS_00062943-exon-scaffold_375-1510915933:24030..24685Clytia hemisphaericaexon
TCONS_00062943-exon-scaffold_375-1575043694:24030..24685TCONS_00062943-exon-scaffold_375-1575043694:24030..24685Clytia hemisphaericaexon
TCONS_00062943-exon-scaffold_375-1491911889:24858..25843TCONS_00062943-exon-scaffold_375-1491911889:24858..25843Clytia hemisphaericaexon
TCONS_00062943-exon-scaffold_375-1510915933:24858..25843TCONS_00062943-exon-scaffold_375-1510915933:24858..25843Clytia hemisphaericaexon
TCONS_00062943-exon-scaffold_375-1575043694:24858..25843TCONS_00062943-exon-scaffold_375-1575043694:24858..25843Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_375supercontigscaffold_375:24030..25843 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
27.6914	26.5139	6.75706	4.66615	23.8056	16.5314	13.7602	13.4517	13.8298	12.3396	11.1452	9.45689	6.02676	5.91765	7.7484	6.69727	26.2523	29.3849	4.10671	4.02669	22.7567	22.388	30.268	28.8163	11.6568	12.7385	14.4404	10.1547	16.5301	17.6037
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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