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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062930 ID=TCONS_00062930|Name=TCONS_00062930|organism=Clytia hemisphaerica|type=transcript|length=1869bp
AGTCATATCTTTAAAGTTCTGTTTTTTATGTCATAAAGAGACACTGTGCT
GTTAAAAAGAGATGGTGAGGTCGAGGAGACATTTTTCTCcttcttttaat
aattttttatttttctaaatgtcCGTGTATGAGATGGGAATGTGAATTAa
tcaattcttttttgaaattcatgtCTAAGACgcttatttcaattttcatc
atTCCATTCTTGTTGATTATACTATCCATGAGTTTTGAACGTTGCTTAAT
CCATATATAAGAGGTTTAACTTCTTGACTTCAAAGAAAGTTAAGACATTT
TGGGAAAGAGAGCCTGATATTTATTGTAAACACATTACAAAACATATACG
ACGTTATTTAATGTCAAGCTGACGATTAAAGAAATGATAAAGATGTAAAG
AAAGAGAGAGATAGAGGAAAATGGATGATCTGAAATACAAACTATGGCAT
ATTTTGAACAAAACAATAAGTTGACATTTACTAAAAGTTTTCAAGGGCTT
AGAAAACATTGTTATAAATGTATCTTGATATTATTACTGGTAACTTTAGT
ACTGTTTGTTGTTGTGTCAACTATTCAAAATTGGTTTACAGTGACCTTGA
ACTGTCAACGCCCTCAAAATGGAACTGTTAACATGGAACATGATGTTGTG
TTTGGAGTTAAAGATATATGCTTTACAAGGAATAAAACAATTGTTTGTAG
GAATATAGCTGATTTTCACATACCTGGAACCATACcaatggACGATACAA
AGAAGCTTGTGGTTTTAGCCATCGTCTTCAACACGTTTGCTTTACTCCTG
GCATCAAGCACCACCTACTGTAGCCAAGGCTTTGCAAAAGCATCTGTCAC
TTACATAACATTGGGATGTTTAGCTCTGGCAGTTGTTAGCGCGACGTATG
GTCTCCAAGAAGCTGAGAAACATTTCGATGGTCACGTGATTGAAGTTCTC
AAAACATACTTGGGAATGGAAAATAAATGCAGTATAACTAATATTCGACG
AGGGTTCTGTTTCAATGTTATGATTTCGTCTACTATATTATTATATATGG
CTTTACTGATGTATGTAATTGAATGGAAGTACCCTAAGAAAGAAGAGATT
ATACCGCAAAGTAATGCTGAGAGATTGGCTCGTTATAGGCTAATGAGTCA
TATATCAGGACAGTCTGTATTTTTATAGGACTAAGTTTTTTGATAAGACT
CATAACGATTAAAAAACTACTTGCAGATATTTTCTACGTgaagataatta
aaaatttacagCATAAAGGACCTGAGCTCCGATAATATAGAATTCAGAAA
ATTTATAAGAGACAGTTATATGTACTTTTGATCAAGTCCATTTTTGGACC
AAGACTTTCTCTGAAAATATACCCGGGGGGGAGAGGCACTTGATTAAAAA
AGGACCTAATGTGGCCTTTGAAATGAAAACCTTACAACCCAGAGAAAACT
TAACCAAAGTTGAGTAAATTTTGGCCatctttttcaatgtttttcatttt
tcctcatttcgacccttacagtaaGACTtggaaaagggacccttaagggc
cgcacgtatggtaggTCGTTCACCCTGAGTGCCCCCTCTCCGGGAGATTA
AACCAATAAAGAAATCTATCAGgatttatctttttatattgatcatatat
ttttgaaaagcctGGCTTCTATATCAACACTgcgaaaatatttgttgaat
ACCATAGTATATTTTTAGTGACAATGTTTTCCAAATGAATTTTAGGTATT
ATTTTAtagatgttttttatttgaaaatttatagaGATCTTTATGTAATA
TTAATTATCTTAAAGAAAAATTGTACAGGTAAATAagaatttacaaataa
aatagaaGCAAAATATTCA Run BLAST on NCBI protein sequence of TCONS_00062930-protein >TCONS_00062930-protein ID=TCONS_00062930-protein|Name=TCONS_00062930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MAYFEQNNKLTFTKSFQGLRKHCYKCILILLLVTLVLFVVVSTIQNWFTV
TLNCQRPQNGTVNMEHDVVFGVKDICFTRNKTIVCRNIADFHIPGTIPMD
DTKKLVVLAIVFNTFALLLASSTTYCSQGFAKASVTYITLGCLALAVVSA
TYGLQEAEKHFDGHVIEVLKTYLGMENKCSITNIRRGFCFNVMISSTILL
YMALLMYVIEWKYPKKEEIIPQSNAERLARYRLMSHISGQSVFL Run BLAST on NCBI transcript from alignment at scaffold_374:44428..49389- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062930 ID=TCONS_00062930|Name=TCONS_00062930|organism=Clytia hemisphaerica|type=transcript|length=4962bp|location=Sequence derived from alignment at scaffold_374:44428..49389- (Clytia hemisphaerica)
AGTCATATCTTTAAAGTTCTGTTTTTTATGTCATAAAGAGACACTGTGCT
GTTAAAAAGAGATGGTGAGGTCGAGGAGACATTTTTCTCCTTCTTTTAAT
AATTTTTTATTTTTCTAAATGTCCGTGTATGAGATGGGAATGTGAATTAA
TCAATTCTTTTTTGAAATTCATGTCTAAGACGCTTATTTCAATTTTCATC
ATTCCATTCTTGTTGATTATACTATCCATGAGTTTTGAACGTTGCTTAAT
CCATATATAAGAGGTTTAACTTCTTGACTTCAAAGAAAGTTAAGACATTT
TGGGAAAGAGAGCCTGATATTTATTGTAAACACATTACAAAACATATACG
ACGTTATTTAATGTCAAGCTGACGATTAAAGAAATGATAAAGATGTAAAG
AAAGAGAGAGATAGAGGAAAATGGATGATCTGAAATACAAACTATGGCAT
ATTTTGAACAAAACAATAAGTTGACATTTACTAAAAGTTTTCAAGGGCTT
AGAAAACATTGTTATAAATGTATCTTGATATTATTACTGGTAACTTTAGT
ACTGTTTGTTGTTGTGTCAACTATTCAAAATTGGTTTACAGTGACCTTGA
ACTGTCAACGCCCTCAAAATGGAACTGTTAACATGGAACATGATGTTGTG
TTTGGAGTTAAAGATATATGCTTTACAAGGAATAAAACAATTGTTTGTAG
GAATATAGCTGATTTTCACATACCTGGAACCATACGTAAGTTAAAATATA
TCCAGGATTTATACTTTTTTTATAAGGACTTACTATATAAGAACATAATG
CTTCTGTGACAAAATCTTAAGAATAAGTTAAGAACACTTTAAAGCATTAC
ATTTTCTTTTTTTTAAGAACATCCAAAGTTTTTGAAGACTTTGGATGTTC
TTAACTTTTTTGAGTTTTAAGCCTAAAAATGTTCTTAACGTGTTTTTATA
ATTTTCCCATTTTGTGATTATTTTGGTCCATGTTCCTAAGAAATAAGGTG
TTTTAGAGTCTGCGAAGCCTTTAAGTGTTCTTAACTTGTTCTTAGCTTGG
CCATCGAAGCCTTATGTTCTTATAAATTTTGTTCTTATAGAAAAACGTAT
ATGGACCATGAAACACCCGATTTCTTGGGAAAATAGAAAAAAATACTTAT
ATTATGGTGAAAATAAAATCATGTTAACATCATTCCTTTAAAACTCGTAA
AGTTTAGAAATAGGAAGGCTTCAAAAGTTTTTGAACCCCCACCCTCTGGA
AAATAAGGCTTAATTTTCGTCCCCGGTGGAAAAAATACCTGTCTATTTCA
GCCCGGCACTTGGAAATTGACTTTGAATTAAACACCATTTGAATTTCAAT
AAAAAAAAATTGCAATCTCCAAAACCATTCTCATTGGATTGTTTGAGCTG
GAAACAATGGAGTTTCTATATCCCCTTGGCCCCATTTAAATATATATAAA
ACTTTCGTCTCCTCTGTAGGAGAAAGTTCCAACGGGGCTGTAAGATAGGG
GTGTACCACTAATGACGTTTAGCATTCCTTCTTCACTTTTACGACAGCTT
GGCGCAAAGTGACGTATTGTGTATTCAAAACAAAAAAAAATATATAATTT
CATCTAAAGTGATTGCAGTTTTTTGATCAGGTCAGTGCAACAGGGATATA
GCAGTCATCAAACAACTTGAACTTTGCAGAAAAATCACTGTTAACTTAAC
ATTTAATGCTTTTAATTGGTTAATTGTATAATTAAGAATGGATTAACATA
CACGTTTTTTTTTATAAGAACGTCAAAAATTTTCGAAGGCTTCGGATGTT
CTTAGTTTTTTGGATTTGAAGCCTAAAAATGTTCTTAAAATGTTCTTATT
TTCAGCTTTTTTTGAGCATTTTGATGTAATTTCTTAAGAAAATGCATGTT
TTTAAGTCTCCAAAGCCTTAGAATGTTCCTAGAATGTTCTTAAATTTTTG
GGCTTGAAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAAAAAGCG
TGTACACATTTATTCAAAGATTTTTAATTGCGATCAACAGATAATCGAGC
TTAAAAAAGCCTCAGCTTTTTTATAGATTTCCAATCGTCAATGTATAAGG
TTGTATAGACCCATAGACCATTGACTTTCAAGCCGGAAGGGCTAGACTTG
AGACTCCTGAATAGGAAATGAAGCCCAAATGAAGCCACTTTATTTCCCAC
AAACGCAAACGCTGGATTGAAAGTAAAATCTATCAAAAAATGCGGTCTTC
AAAAACAAAAGGAGCCACTAGATACAATCCGTCGTTATGATCACGACGCG
TTCTAAACGCGTTCTGGATGGGAAATAAGTGGCTTCACTTGTTCTTGCCT
GAGAAAGGTTAGAGATTCTACTCTTGCCTTTCGGGCTTTAAACTCAATGC
CATAGACAGTATAATCTGTGTGTCACTAATACAGCTTCAGACTGGTTGTA
TATTGTCAAGGTATATTACTTGAATTCAGATATTTGCTGTAAAACACCAA
CAATGAGTCTGCTACGAGATTATTGCCTCTCTTTTATCCATAAGAGATGC
ACCAAATTAGGTAACAAGGTCTATGAAATCTTTTTTTCATTTCAGCAATG
GACGATACAAAGAAGCTTGTGGTTTTAGCCATCGTCTTCAACACGTTTGC
TTTACTCCTGGCATCAAGCACCACCTACTGTAGCCAAGGCTTTGCAAAAG
CATCTGTCACTTACATAACATTGGGATGTTTAGCTCTGGCAGGTTAGTAG
TACTCAGCCAGCTGCAATCCCACACAAAATATTTGAAACAAAGGGGATTT
CCCTGTGAAATTTTAAACACCACAAATGATTTTTAATCGCGTTAAACTAG
AGTTGGAAATTTTAACTGGAAGTTTGGAAGTTTTAACTCTGAGTTTTAAC
ACGAGACTTAAGTCTTAAGGCCTTAGGATCTCAGGATTTAAAAGCTCAAA
ATTGTTTCAATCAGGCTTGGAATATAGCCTAGAAGCCACCGAACCCTTCA
AAAATCATTAATATTCAATGGAAGAAAGTAGAAGTGCTAAAATAGCAATT
CTCGCCAGAACTTTAAATTCTGAAAAACGTTAAAATACACGAAAGTCTCA
ATATATTTCGAGCAAAATTGTGACACCAGGAATATCAAAGCAACACAGCC
CATCTAACACGTCCCTAACGCCAATTTAATTCAATATAACGTCTACCTTA
TCCACCCTTTTTACGCTGGACCTTATTGGCTTTGTTTTTTAGCTCTTGGC
GTAACAAGGGCCGGCGTAAAAGGGGCCGGCGTTAAATTAGGGCCGGCGTA
AAAAGGGCCGATAAGGTATATAACATCCATATAATGCATAAAGTCAGGGA
AAGTCACGACAGCAAACGTTCTATGTTAACTGGTAAATTTTTGGTTATAG
ACTCTATTGAACGTCATCACTGTGAAAAAAATTCTCAAAAATAATCATTC
AGTCAAAAGATATCGAACAAAGTTATAAGCTGATTGACGTCTAAAAACGC
TGTTTTCTGCAGTTTTTTGCTGTTTTTTGGGGTCAATCACTTATTAACTT
TGTATCATTAACTTTATATCTAATAAATATTTTAATGAAATTTCTTCATA
GTGATGATCTCCTAAGATCAAAGAATCTCTCCAGTGAAAATGATAGTTAT
AGCACTTTTCTACAAGATCTTCATTTTTTTTTCTTCATTTTCATCTTCAC
TTTTAGAATTTTTTTAAAGATTTTTTTAATTCAAATTGTTCCACTCCCTA
ATATCTTTCCAATGATACCAAATTTATAAAGATTGAAGAATTCCTTCAAA
AGTTATGGGTAAAAGAAAAAAGAGTGCACACTTATCGTGAATAGACTTTA
GTCATCAAATACGACAGATATAGAACCAGAACACCAAAAATTCAGATATT
ATCATTCCAGCCGCGGCTTTGTTATACTATGGGTGAATAAATGACATCTT
TCTTTACTCAATTATTCATTTTCAGTTGTTAGCGCGACGTATGGTCTCCA
AGAAGCTGAGAAACATTTCGATGGTCACGTGATTGAAGTTCTCAAAACAT
ACTTGGGAATGGAAAATAAATGCAGTATAACTAATATTCGACGAGGGTTC
TGTTTCAATGTTATGATTTCGTCTACTATATTATTATATATGGCTTTACT
GATGTATGTAATTGAATGGAAGTACCCTAAGAAAGAAGAGATTATACCGC
AAAGTAATGCTGAGAGATTGGCTCGTTATAGGCTAATGAGTCATATATCA
GGACAGTCTGTATTTTTATAGGACTAAGTTTTTTGATAAGACTCATAACG
ATTAAAAAACTACTTGCAGATATTTTCTACGTGAAGATAATTAAAAATTT
ACAGCATAAAGGACCTGAGCTCCGATAATATAGAATTCAGAAAATTTATA
AGAGACAGTTATATGTACTTTTGATCAAGTCCATTTTTGGACCAAGACTT
TCTCTGAAAATATACCCGGGGGGGAGAGGCACTTGATTAAAAAAGGACCT
AATGTGGCCTTTGAAATGAAAACCTTACAACCCAGAGAAAACTTAACCAA
AGTTGAGTAAATTTTGGCCATCTTTTTCAATGTTTTTCATTTTTCCTCAT
TTCGACCCTTACAGTAAGACTTGGAAAAGGGACCCTTAAGGGCCGCACGT
ATGGTAGGTCGTTCACCCTGAGTGCCCCCTCTCCGGGAGATTAAACCAAT
AAAGAAATCTATCAGGATTTATCTTTTTATATTGATCATATATTTTTGAA
AAGCCTGGCTTCTATATCAACACTGCGAAAATATTTGTTGAATACCATAG
TATATTTTTAGTGACAATGTTTTCCAAATGAATTTTAGGTATTATTTTAT
AGATGTTTTTTATTTGAAAATTTATAGAGATCTTTATGTAATATTAATTA
TCTTAAAGAAAAATTGTACAGGTAAATAAGAATTTACAAATAAAATAGAA
GCAAAATATTCA Coding sequence (CDS) from alignment at scaffold_374:44428..49389- >TCONS_00062930 ID=TCONS_00062930|Name=TCONS_00062930|organism=Clytia hemisphaerica|type=CDS|length=2205bp|location=Sequence derived from alignment at scaffold_374:44428..49389- (Clytia hemisphaerica)
TTGTTAGCGCGACGTATGGTCTCCAAGAAGCTGAGAAACATTTCGATGGT
CACGTGATTGAAGTTCTCAAAACATACTTGGGAATGGAAAATAAATGCAG
TATAACTAATATTCGACGAGGGTTCTGTTTCAATGTTATGATTTCGTCTA
CTATATTATTATATATGGCTTTACTGATGTATGTAATTGAATGGAAGTAC
CCTAAGAAAGAAGAGATTATACCGCAAAGTAATGCTGAGAGATTGGCTCG
TTATAGGCTAATGAGTCATATATCAGGACAGTCTGTATTTTTATAGCAAT
GGACGATACAAAGAAGCTTGTGGTTTTAGCCATCGTCTTCAACACGTTTG
CTTTACTCCTGGCATCAAGCACCACCTACTGTAGCCAAGGCTTTGCAAAA
GCATCTGTCACTTACATAACATTGGGATGTTTAGCTCTGGCAGATGGCAT
ATTTTGAACAAAACAATAAGTTGACATTTACTAAAAGTTTTCAAGGGCTT
AGAAAACATTGTTATAAATGTATCTTGATATTATTACTGGTAACTTTAGT
ACTGTTTGTTGTTGTGTCAACTATTCAAAATTGGTTTACAGTGACCTTGA
ACTGTCAACGCCCTCAAAATGGAACTGTTAACATGGAACATGATGTTGTG
TTTGGAGTTAAAGATATATGCTTTACAAGGAATAAAACAATTGTTTGTAG
GAATATAGCTGATTTTCACATACCTGGAACCATACTTGTTAGCGCGACGT
ATGGTCTCCAAGAAGCTGAGAAACATTTCGATGGTCACGTGATTGAAGTT
CTCAAAACATACTTGGGAATGGAAAATAAATGCAGTATAACTAATATTCG
ACGAGGGTTCTGTTTCAATGTTATGATTTCGTCTACTATATTATTATATA
TGGCTTTACTGATGTATGTAATTGAATGGAAGTACCCTAAGAAAGAAGAG
ATTATACCGCAAAGTAATGCTGAGAGATTGGCTCGTTATAGGCTAATGAG
TCATATATCAGGACAGTCTGTATTTTTATAGCAATGGACGATACAAAGAA
GCTTGTGGTTTTAGCCATCGTCTTCAACACGTTTGCTTTACTCCTGGCAT
CAAGCACCACCTACTGTAGCCAAGGCTTTGCAAAAGCATCTGTCACTTAC
ATAACATTGGGATGTTTAGCTCTGGCAGATGGCATATTTTGAACAAAACA
ATAAGTTGACATTTACTAAAAGTTTTCAAGGGCTTAGAAAACATTGTTAT
AAATGTATCTTGATATTATTACTGGTAACTTTAGTACTGTTTGTTGTTGT
GTCAACTATTCAAAATTGGTTTACAGTGACCTTGAACTGTCAACGCCCTC
AAAATGGAACTGTTAACATGGAACATGATGTTGTGTTTGGAGTTAAAGAT
ATATGCTTTACAAGGAATAAAACAATTGTTTGTAGGAATATAGCTGATTT
TCACATACCTGGAACCATACTTGTTAGCGCGACGTATGGTCTCCAAGAAG
CTGAGAAACATTTCGATGGTCACGTGATTGAAGTTCTCAAAACATACTTG
GGAATGGAAAATAAATGCAGTATAACTAATATTCGACGAGGGTTCTGTTT
CAATGTTATGATTTCGTCTACTATATTATTATATATGGCTTTACTGATGT
ATGTAATTGAATGGAAGTACCCTAAGAAAGAAGAGATTATACCGCAAAGT
AATGCTGAGAGATTGGCTCGTTATAGGCTAATGAGTCATATATCAGGACA
GTCTGTATTTTTATAGCAATGGACGATACAAAGAAGCTTGTGGTTTTAGC
CATCGTCTTCAACACGTTTGCTTTACTCCTGGCATCAAGCACCACCTACT
GTAGCCAAGGCTTTGCAAAAGCATCTGTCACTTACATAACATTGGGATGT
TTAGCTCTGGCAGATGGCATATTTTGAACAAAACAATAAGTTGACATTTA
CTAAAAGTTTTCAAGGGCTTAGAAAACATTGTTATAAATGTATCTTGATA
TTATTACTGGTAACTTTAGTACTGTTTGTTGTTGTGTCAACTATTCAAAA
TTGGTTTACAGTGACCTTGAACTGTCAACGCCCTCAAAATGGAACTGTTA
ACATGGAACATGATGTTGTGTTTGGAGTTAAAGATATATGCTTTACAAGG
AATAAAACAATTGTTTGTAGGAATATAGCTGATTTTCACATACCTGGAAC
CATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062930-exon-scaffold_374-1575043694:48655..49389 | TCONS_00062930-exon-scaffold_374-1575043694:48655..49389 | Clytia hemisphaerica | exon |
| TCONS_00062930-exon-scaffold_374-1575043694:46648..46794 | TCONS_00062930-exon-scaffold_374-1575043694:46648..46794 | Clytia hemisphaerica | exon |
| TCONS_00062930-exon-scaffold_374-1575043694:44428..45414 | TCONS_00062930-exon-scaffold_374-1575043694:44428..45414 | Clytia hemisphaerica | exon |
| TCONS_00062930-exon-scaffold_374-1510915933:48655..49389 | TCONS_00062930-exon-scaffold_374-1510915933:48655..49389 | Clytia hemisphaerica | exon |
| TCONS_00062930-exon-scaffold_374-1510915933:46648..46794 | TCONS_00062930-exon-scaffold_374-1510915933:46648..46794 | Clytia hemisphaerica | exon |
| TCONS_00062930-exon-scaffold_374-1510915933:44428..45414 | TCONS_00062930-exon-scaffold_374-1510915933:44428..45414 | Clytia hemisphaerica | exon |
| TCONS_00062930-exon-scaffold_374-1491911889:48655..49389 | TCONS_00062930-exon-scaffold_374-1491911889:48655..49389 | Clytia hemisphaerica | exon |
| TCONS_00062930-exon-scaffold_374-1491911889:46648..46794 | TCONS_00062930-exon-scaffold_374-1491911889:46648..46794 | Clytia hemisphaerica | exon |
| TCONS_00062930-exon-scaffold_374-1491911889:44428..45414 | TCONS_00062930-exon-scaffold_374-1491911889:44428..45414 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_374 | supercontig | scaffold_374:44428..49389 - |
Blast
The following BLAST results are available for this feature:
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