TCONS_00062922 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062922
Unique NameTCONS_00062922
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062922 ID=TCONS_00062922|Name=TCONS_00062922|organism=Clytia hemisphaerica|type=transcript|length=633bp
CTACTGGAATCTTTGTGGACCTTCAAAAAGCTTTTGACACTGTTGAACAT
AAGATCTTGATCCAAAAACTTAACTTCTATGGTATCCGAGGAACAGCAAA
CAAATTATTTGAGTCTTATCTCACAAGTAGAACCCAATTTGTCCAAATCC
GCAACTCAGTCTCAAAAGTAGCAGAAATCAAACACGGAGTACCTCAAGGA
TCAGTTCTAGGACCCCTACTCTTTCTTCTTTATATAAATGATTTACACTT
GGCAATTAAACATTCCAAAACCTTTCANGAGTGGCAGAAATCAAACACGG
AGTACCTCAAGGATCAGTTCTAGGACCCCTACTTCACACTTGGCATTTAA
ACATTCCAAAACCTTTCATTTTGCAGATGACACATGTATCATCTACTCaa
ataaatctttaaaacaatTGAATTCTAAACTTAACCATGACCTAAAACTG
ATGTCGGAATGGCTCAGAGCAAATAAGATCAGCTTAAATGCTAAAAAAAC
TGATGTAGtagtttttaaagcaaaaagaaaaacctgctataaaaaattaa
atttcagacTTAGTGgacaaaaacttgaaataacAAACAACACAAAATAC
TTGGGAATAATCTTAGATGAAAATCTCAACTGG
Run BLAST on NCBI

protein sequence of TCONS_00062922-protein

>TCONS_00062922-protein ID=TCONS_00062922-protein|Name=TCONS_00062922-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MIYTWQLNIPKPFXSGRNQTRSTSRISSRTPTSHLAFKHSKTFHFADDTC
IIYSNKSLKQLNSKLNHDLKLMSEWLRANKISLNAKKTDVVVFKAKRKTC
YKKLNFRLSGQKLEITNNTKYLGIILDENLNW
Run BLAST on NCBI

transcript from alignment at scaffold_373:230381..231013

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062922 ID=TCONS_00062922|Name=TCONS_00062922|organism=Clytia hemisphaerica|type=transcript|length=633bp|location=Sequence derived from alignment at scaffold_373:230381..231013 (Clytia hemisphaerica)
CCAGTTGAGATTTTCATCTAAGATTATTCCCAAGTATTTTGTGTTGTTTg
ttatttcaagtttttgtcCACTAAgtctgaaatttaattttttatagcag
gtttttctttttgctttaaaaactaCTACATCAGTTTTTTTAGCATTTAA
GCTGATCTTATTTGCTCTGAGCCATTCCGACATCAGTTTTAGGTCATGGT
TAAGTTTAGAATTCAattgttttaaagatttatttGAGTAGATGATACAT
GTGTCATCTGCAAAATGAAAGGTTTTGGAATGTTTAAATGCCAAGTGTGA
AGTAGGGGTCCTAGAACTGATCCTTGAGGTACTCCGTGTTTGATTTCTGC
CACTCNTGAAAGGTTTTGGAATGTTTAATTGCCAAGTGTAAATCATTTAT
ATAAAGAAGAAAGAGTAGGGGTCCTAGAACTGATCCTTGAGGTACTCCGT
GTTTGATTTCTGCTACTTTTGAGACTGAGTTGCGGATTTGGACAAATTGG
GTTCTACTTGTGAGATAAGACTCAAATAATTTGTTTGCTGTTCCTCGGAT
ACCATAGAAGTTAAGTTTTTGGATCAAGATCTTATGTTCAACAGTGTCAA
AAGCTTTTTGAAGGTCCACAAAGATTCCAGTAG

Coding sequence (CDS) from alignment at scaffold_373:230381..231013

>TCONS_00062922 ID=TCONS_00062922|Name=TCONS_00062922|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_373:230381..231013 (Clytia hemisphaerica)
CCAGTTGAGATTTTCATCTAAGATTATTCCCAAGTATTTTGTGTTGTTTg
ttatttcaagtttttgtcCACTAAgtctgaaatttaattttttatagcag
gtttttctttttgctttaaaaactaCTACATCAGTTTTTTTAGCATTTAA
GCTGATCTTATTTGCTCTGAGCCATTCCGACATCAGTTTTAGGTCATGGT
TAAGTTTAGAATTCAattgttttaaagatttatttGAGTAGATGATACAT
GTGTCATCTGCAAAATGAAAGGTTTTGGAATGTTTAAATGCCAAGTGTGA
AGTAGGGGTCCTAGAACTGATCCTTGAGGTACTCCGTGTTTGATTTCTGC
CACTCNTGAAAGGTTTTGGAATGTTTAATTGCCAAGTGTAAATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039412XLOC_039412Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062922-exon-scaffold_373-1491911889:230381..231013TCONS_00062922-exon-scaffold_373-1491911889:230381..231013Clytia hemisphaericaexon
TCONS_00062922-exon-scaffold_373-1510915933:230381..231013TCONS_00062922-exon-scaffold_373-1510915933:230381..231013Clytia hemisphaericaexon
TCONS_00062922-exon-scaffold_373-1575043694:230381..231013TCONS_00062922-exon-scaffold_373-1575043694:230381..231013Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062922-proteinTCONS_00062922-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_373supercontigscaffold_373:230381..231013 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0836739	0	0.0947399	0	0	0.298669	0	0	0.465325	1.30772	1.29535	1.0042	0.159674	0.552926	0.44123	0.271673	0.490776	0.599695	0.62438	0.573039	0.877491	0.216054	0	0	0.159554	0	0.148194	0	0.309681	0.312655
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062922 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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