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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062919 ID=TCONS_00062919|Name=TCONS_00062919|organism=Clytia hemisphaerica|type=transcript|length=900bp
ACCTGACGAAGATGGAAAACGTCATCAAATTGGCATCTCTGAGCTTACCG
ACCTACCTATTGATATGATTAAAGATATTACTCTTGACCCAATGCACTTG
GTTTACCTTGGTATCACCAGACGTCTCCTGTACTACATCAAAGGTTCTTT
CCGAAAGATTAAAGCTGGGAAGTTATCTGCTGCTTATTTGAACGCCATTT
CTGCTGCTTTGAATGCTATTGAGCTTCCGACTGAATTCGCGCGTAAAGCA
AGGACCTTATCTGAACTAGATAGATGGAAAGCTACTGAACTCAAGTCTTT
TTTGTTGTACACTGGATTGGTAGTTTTGCCACCCTATTTCTCATCGCCCA
CTTTCAAGCATTTTCTAAGTTATTCCATCGCTATCCGATTGCTCAGTGAA
GAAAACGACATTATTAGAAACAGAAACATTGGAGCTGCTCGTGGTCTTTT
GAAGTATTTTGTTGACAATTGTCATGTTCATTACGGTGAAACATTTTGTG
TTTATAACGTGCATAATGTTGAACACCTTCCAGACGACGTTCAGAGATTT
CAGTTACCCTTGATtaaattttcatgttttcaatTCGAGAACCATCTTCA
AAAGATAAAACGTCTTGTTAGAGGAAGAAACAACCCACTCAGTCAGATCG
TTAAAAGATGTGATGAGCTAGATGGCAGCTACTATATGAATAAACCACTT
GAGTTGAAGTACAAGCCAGATGGCAAAGATTCTTGGTTTATTTCGTTTGA
TAAACTAGTTCAGCTAAAGAGAATAGAGAATAATGGAACATTTCTTTGTG
ACACGTACAAACTATCCGATCTATCGTCCCACTTCAATGTTTTTAACATC
GATTCCAAGCAGCTTGGAATATACTTATTGAAGAGGAACTTGAATCCATC Run BLAST on NCBI protein sequence of TCONS_00062919-protein >TCONS_00062919-protein ID=TCONS_00062919-protein|Name=TCONS_00062919-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
PDEDGKRHQIGISELTDLPIDMIKDITLDPMHLVYLGITRRLLYYIKGSF
RKIKAGKLSAAYLNAISAALNAIELPTEFARKARTLSELDRWKATELKSF
LLYTGLVVLPPYFSSPTFKHFLSYSIAIRLLSEENDIIRNRNIGAARGLL
KYFVDNCHVHYGETFCVYNVHNVEHLPDDVQRFQLPLIKFSCFQFENHLQ
KIKRLVRGRNNPLSQIVKRCDELDGSYYMNKPLELKYKPDGKDSWFISFD
KLVQLKRIENNGTFLCDTYKLSDLSSHFNVFNIDSKQLGIYLLKRNLNP Run BLAST on NCBI transcript from alignment at scaffold_373:161617..162516 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062919 ID=TCONS_00062919|Name=TCONS_00062919|organism=Clytia hemisphaerica|type=transcript|length=900bp|location=Sequence derived from alignment at scaffold_373:161617..162516 (Clytia hemisphaerica)
GATGGATTCAAGTTCCTCTTCAATAAGTATATTCCAAGCTGCTTGGAATC
GATGTTAAAAACATTGAAGTGGGACGATAGATCGGATAGTTTGTACGTGT
CACAAAGAAATGTTCCATTATTCTCTATTCTCTTTAGCTGAACTAGTTTA
TCAAACGAAATAAACCAAGAATCTTTGCCATCTGGCTTGTACTTCAACTC
AAGTGGTTTATTCATATAGTAGCTGCCATCTAGCTCATCACATCTTTTAA
CGATCTGACTGAGTGGGTTGTTTCTTCCTCTAACAAGACGTTTTATCTTT
TGAAGATGGTTCTCGAattgaaaacatgaaaatttaATCAAGGGTAACTG
AAATCTCTGAACGTCGTCTGGAAGGTGTTCAACATTATGCACGTTATAAA
CACAAAATGTTTCACCGTAATGAACATGACAATTGTCAACAAAATACTTC
AAAAGACCACGAGCAGCTCCAATGTTTCTGTTTCTAATAATGTCGTTTTC
TTCACTGAGCAATCGGATAGCGATGGAATAACTTAGAAAATGCTTGAAAG
TGGGCGATGAGAAATAGGGTGGCAAAACTACCAATCCAGTGTACAACAAA
AAAGACTTGAGTTCAGTAGCTTTCCATCTATCTAGTTCAGATAAGGTCCT
TGCTTTACGCGCGAATTCAGTCGGAAGCTCAATAGCATTCAAAGCAGCAG
AAATGGCGTTCAAATAAGCAGCAGATAACTTCCCAGCTTTAATCTTTCGG
AAAGAACCTTTGATGTAGTACAGGAGACGTCTGGTGATACCAAGGTAAAC
CAAGTGCATTGGGTCAAGAGTAATATCTTTAATCATATCAATAGGTAGGT
CGGTAAGCTCAGAGATGCCAATTTGATGACGTTTTCCATCTTCGTCAGGT
Coding sequence (CDS) from alignment at scaffold_373:161617..162516 >TCONS_00062919 ID=TCONS_00062919|Name=TCONS_00062919|organism=Clytia hemisphaerica|type=CDS|length=897bp|location=Sequence derived from alignment at scaffold_373:161617..162516 (Clytia hemisphaerica)
TGGATTCAAGTTCCTCTTCAATAAGTATATTCCAAGCTGCTTGGAATCGA
TGTTAAAAACATTGAAGTGGGACGATAGATCGGATAGTTTGTACGTGTCA
CAAAGAAATGTTCCATTATTCTCTATTCTCTTTAGCTGAACTAGTTTATC
AAACGAAATAAACCAAGAATCTTTGCCATCTGGCTTGTACTTCAACTCAA
GTGGTTTATTCATATAGTAGCTGCCATCTAGCTCATCACATCTTTTAACG
ATCTGACTGAGTGGGTTGTTTCTTCCTCTAACAAGACGTTTTATCTTTTG
AAGATGGTTCTCGAattgaaaacatgaaaatttaATCAAGGGTAACTGAA
ATCTCTGAACGTCGTCTGGAAGGTGTTCAACATTATGCACGTTATAAACA
CAAAATGTTTCACCGTAATGAACATGACAATTGTCAACAAAATACTTCAA
AAGACCACGAGCAGCTCCAATGTTTCTGTTTCTAATAATGTCGTTTTCTT
CACTGAGCAATCGGATAGCGATGGAATAACTTAGAAAATGCTTGAAAGTG
GGCGATGAGAAATAGGGTGGCAAAACTACCAATCCAGTGTACAACAAAAA
AGACTTGAGTTCAGTAGCTTTCCATCTATCTAGTTCAGATAAGGTCCTTG
CTTTACGCGCGAATTCAGTCGGAAGCTCAATAGCATTCAAAGCAGCAGAA
ATGGCGTTCAAATAAGCAGCAGATAACTTCCCAGCTTTAATCTTTCGGAA
AGAACCTTTGATGTAGTACAGGAGACGTCTGGTGATACCAAGGTAAACCA
AGTGCATTGGGTCAAGAGTAATATCTTTAATCATATCAATAGGTAGGTCG
GTAAGCTCAGAGATGCCAATTTGATGACGTTTTCCATCTTCGTCAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062919-exon-scaffold_373-1491911889:161617..162516 | TCONS_00062919-exon-scaffold_373-1491911889:161617..162516 | Clytia hemisphaerica | exon |
| TCONS_00062919-exon-scaffold_373-1510915933:161617..162516 | TCONS_00062919-exon-scaffold_373-1510915933:161617..162516 | Clytia hemisphaerica | exon |
| TCONS_00062919-exon-scaffold_373-1575043694:161617..162516 | TCONS_00062919-exon-scaffold_373-1575043694:161617..162516 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_373 | supercontig | scaffold_373:161617..162516 . |
Blast
The following BLAST results are available for this feature:
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