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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062917 ID=TCONS_00062917|Name=TCONS_00062917|organism=Clytia hemisphaerica|type=transcript|length=975bp
GTGCaaaaaacaatctttaaaaggttggtgcatttacagaaattacactg
aataCTAAAAGTAATACTAAGAAAGTATAAAGACatttatattgtaaaaa
atatccaccaaaacaaaccaaaaacaaccaaaatctaACAAAAGTTCTTC
ACTACTTGCCCCTCTTGAATCAGAAATTTGCTTTGTCATTGAAGCGCCAA
AACtgtaaataaaattagtttttgacgGTCGGCGCAGCAgacattttcat
gctaaattttgTTCAGTCGGGACGAACAAAATTCTTGAGCAAGCGAAGAT
ATAGCCATTGAACCCGACTGTTGTCGGCACATCAATGGGCCACTACTAaa
tctctccgatggtatattggcccgctcctttagagctttagcgtgggcgg
ccgccaatacgccatcggaatatcagataaaagtCAGACAAACAAATCAA
GATGGCGGGCGAATTCAGTGGATCTCACAGTAGAAAAGGTGCTACAAAAC
ATTGTTGTTGGGGAAATTGTAAACATGACAGTCGATATCCTGAGAATTTG
GCTGCTGGAACTTATTTTTTACCTTTCCCAAAGCCAGGAAAACTTAAAGA
TGGCATGACTCAATGGGAAAGAAACAGACAAAACGAAAGAACTGAGAAAA
CTAAACGATGGTTACATGCATGTGGGAGAAAGAACTTTGGAATAGAAAAT
GTGAAGCCCTACACTTATATTTGTTCAGTCCATTTTGTTGGTGGTTCTGG
GCCTACTGATCAAAACCCTGACCCATTGTTGGCTACCTTGACAGTATaaa
cctaactcttcacacaaaaattacgggaaacgcatgtttggactttgtac
cctatgctgcactcaagcactgaagccaaagtcccgcaaaggcgggacaa
aaatcagttttttgaagtttgcaaaaaaacgccacatagaagatctttca
aattcagtatgtgaatagagcagta Run BLAST on NCBI protein sequence of TCONS_00062917-protein >TCONS_00062917-protein ID=TCONS_00062917-protein|Name=TCONS_00062917-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
MAGEFSGSHSRKGATKHCCWGNCKHDSRYPENLAAGTYFLPFPKPGKLKD
GMTQWERNRQNERTEKTKRWLHACGRKNFGIENVKPYTYICSVHFVGGSG
PTDQNPDPLLATLTV Run BLAST on NCBI transcript from alignment at scaffold_373:132300..133274 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062917 ID=TCONS_00062917|Name=TCONS_00062917|organism=Clytia hemisphaerica|type=transcript|length=975bp|location=Sequence derived from alignment at scaffold_373:132300..133274 (Clytia hemisphaerica)
tactgctctattcacatactgaatttgaaagatcttctatgtggcgtttt
tttgcaaacttcaaaaaactgatttttgtcccgcctttgcgggactttgg
cttcagtgcttgagtgcagcatagggtacaaagtccaaacatgcgtttcc
cgtaatttttgtgtgaagagttaggtttATACTGTCAAGGTAGCCAACAA
TGGGTCAGGGTTTTGATCAGTAGGCCCAGAACCACCAACAAAATGGACTG
AACAAATATAAGTGTAGGGCTTCACATTTTCTATTCCAAAGTTCTTTCTC
CCACATGCATGTAACCATCGTTTAGTTTTCTCAGTTCTTTCGTTTTGTCT
GTTTCTTTCCCATTGAGTCATGCCATCTTTAAGTTTTCCTGGCTTTGGGA
AAGGTAAAAAATAAGTTCCAGCAGCCAAATTCTCAGGATATCGACTGTCA
TGTTTACAATTTCCCCAACAACAATGTTTTGTAGCACCTTTTCTACTGTG
AGATCCACTGAATTCGCCCGCCATCTTGATTTGTTTGTCTGacttttatc
tgatattccgatggcgtattggcggccgcccacgctaaagctctaaagga
gcgggccaatataccatcggagagattTAGTAGTGGCCCATTGATGTGCC
GACAACAGTCGGGTTCAATGGCTATATCTTCGCTTGCTCAAGAATTTTGT
TCGTCCCGACTGAAcaaaatttagcatgaaaatgtcTGCTGCGCCGACcg
tcaaaaactaattttatttacaGTTTTGGCGCTTCAATGACAAAGCAAAT
TTCTGATTCAAGAGGGGCAAGTAGTGAAGAACTTTTGTtagattttggtt
gtttttggtttgttttggtggatattttttacaatataaatGTCTTTATA
CTTTCTTAGTATTACTTTTAGtattcagtgtaatttctgtaaatgcacca
accttttaaagattgttttttGCAC Coding sequence (CDS) from alignment at scaffold_373:132300..133274 >TCONS_00062917 ID=TCONS_00062917|Name=TCONS_00062917|organism=Clytia hemisphaerica|type=CDS|length=348bp|location=Sequence derived from alignment at scaffold_373:132300..133274 (Clytia hemisphaerica)
ttATACTGTCAAGGTAGCCAACAATGGGTCAGGGTTTTGATCAGTAGGCC
CAGAACCACCAACAAAATGGACTGAACAAATATAAGTGTAGGGCTTCACA
TTTTCTATTCCAAAGTTCTTTCTCCCACATGCATGTAACCATCGTTTAGT
TTTCTCAGTTCTTTCGTTTTGTCTGTTTCTTTCCCATTGAGTCATGCCAT
CTTTAAGTTTTCCTGGCTTTGGGAAAGGTAAAAAATAAGTTCCAGCAGCC
AAATTCTCAGGATATCGACTGTCATGTTTACAATTTCCCCAACAACAATG
TTTTGTAGCACCTTTTCTACTGTGAGATCCACTGAATTCGCCCGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062917-exon-scaffold_373-1491911889:132300..133274 | TCONS_00062917-exon-scaffold_373-1491911889:132300..133274 | Clytia hemisphaerica | exon |
| TCONS_00062917-exon-scaffold_373-1510915933:132300..133274 | TCONS_00062917-exon-scaffold_373-1510915933:132300..133274 | Clytia hemisphaerica | exon |
| TCONS_00062917-exon-scaffold_373-1575043694:132300..133274 | TCONS_00062917-exon-scaffold_373-1575043694:132300..133274 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_373 | supercontig | scaffold_373:132300..133274 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006612 | Znf_C2CH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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