TCONS_00062911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062911
Unique NameTCONS_00062911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length982

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062911 ID=TCONS_00062911|Name=TCONS_00062911|organism=Clytia hemisphaerica|type=transcript|length=982bp
GTTATactaaaatattttgtcaaattaatCACTTTGTCTTCCCATGGTCA
AACCCACGGTCTCTTTCCCACTGCACCATTTCTTTCGGTCGAAAGTTCAT
AATGTATGCTCGTCTATTGGTACCAGTGTTATTTCCTCTCGTGTAGTGTA
ACGTTCGACCGTGATGCAGAGTACACGACCCACGTTTCAACGGTTGTGGT
TGACCCTCTCTCTCGCTACACGAATCTGTACACCTTGCATGGTGGCCCTC
CTTCACCCTCCTATGTGGACGTAGAGCTTCCTCCTGATGGGAGCCTCTCA
CAAACCACATGCATCCATTCTCAACGGTGGCATCGTCAAGGGCAACCCAA
CACGATACCGCCCGCTTATCAGGCATATCCGGCCAATATGATTCGTCCTG
ATGCCAAGGAGTTGGTGTTCCGCTATACGGAAATTTGTTGATCAGCATAT
CGAAATCAAAGTCCATGTCTTCACCCAGGATTTTTCTTACCACCGTTAAT
AACCGTTTGAAGATAGGTCTTTCTAAAAATGTTCCATCGTACATAGAAGG
CCACATGATCTGACAAATATTCTCTTTCTTCCTCTCATTGTTCTGTTCCT
CCTTATGTGAACCGAGATCAAAGCGATGGTCTGTCGTTTCGCTAGAATCC
AACAgttcttcataacttttgatgtaaCTTTTCACAACCCTCTCATCCTG
AATCAAATCACGAATGACCAAGAATCCATCCTCCTCAAATCTGTCTTTCC
ATGAAGATTGATAATTCTTCTCCACCCATTCGGTGTCAAGATCACAAGAT
ATGTTGGTAACATCCTTGTCTGCCATTTTGAATCAGTGTTGATAATGTAT
TCCGTAAGATGCTTAAAAAATTAGACATATCCCTTTCTGCGAGTGGTATT
TTGAAATACGATCATTTTCATGAACGAGTTGTTTATATATGGGTATTGAA
TTTCCTCATGATTGTACACTATCCATCCTTAT
Run BLAST on NCBI

protein sequence of TCONS_00062911-protein

>TCONS_00062911-protein ID=TCONS_00062911-protein|Name=TCONS_00062911-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MADKDVTNISCDLDTEWVEKNYQSSWKDRFEEDGFLVIRDLIQDERVVKS
YIKSYEELLDSSETTDHRFDLGSHKEEQNNERKKENICQIMWPSMYDGTF
LERPIFKRLLTVVRKILGEDMDFDFDMLINKFPYSGTPTPWHQDESYWPD
MPDKRAVSCWVALDDATVENGCMWFVRGSHQEEALRPHRRVKEGHHARCT
DSCSEREGQPQPLKRGSCTLHHGRTLHYTRGNNTGTNRRAYIMNFRPKEM
VQWERDRGFDHGKTK
Run BLAST on NCBI

transcript from alignment at scaffold_373:59841..60822

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062911 ID=TCONS_00062911|Name=TCONS_00062911|organism=Clytia hemisphaerica|type=transcript|length=982bp|location=Sequence derived from alignment at scaffold_373:59841..60822 (Clytia hemisphaerica)
ATAAGGATGGATAGTGTACAATCATGAGGAAATTCAATACCCATATATAA
ACAACTCGTTCATGAAAATGATCGTATTTCAAAATACCACTCGCAGAAAG
GGATATGTCTAATTTTTTAAGCATCTTACGGAATACATTATCAACACTGA
TTCAAAATGGCAGACAAGGATGTTACCAACATATCTTGTGATCTTGACAC
CGAATGGGTGGAGAAGAATTATCAATCTTCATGGAAAGACAGATTTGAGG
AGGATGGATTCTTGGTCATTCGTGATTTGATTCAGGATGAGAGGGTTGTG
AAAAGttacatcaaaagttatgaagaacTGTTGGATTCTAGCGAAACGAC
AGACCATCGCTTTGATCTCGGTTCACATAAGGAGGAACAGAACAATGAGA
GGAAGAAAGAGAATATTTGTCAGATCATGTGGCCTTCTATGTACGATGGA
ACATTTTTAGAAAGACCTATCTTCAAACGGTTATTAACGGTGGTAAGAAA
AATCCTGGGTGAAGACATGGACTTTGATTTCGATATGCTGATCAACAAAT
TTCCGTATAGCGGAACACCAACTCCTTGGCATCAGGACGAATCATATTGG
CCGGATATGCCTGATAAGCGGGCGGTATCGTGTTGGGTTGCCCTTGACGA
TGCCACCGTTGAGAATGGATGCATGTGGTTTGTGAGAGGCTCCCATCAGG
AGGAAGCTCTACGTCCACATAGGAGGGTGAAGGAGGGCCACCATGCAAGG
TGTACAGATTCGTGTAGCGAGAGAGAGGGTCAACCACAACCGTTGAAACG
TGGGTCGTGTACTCTGCATCACGGTCGAACGTTACACTACACGAGAGGAA
ATAACACTGGTACCAATAGACGAGCATACATTATGAACTTTCGACCGAAA
GAAATGGTGCAGTGGGAAAGAGACCGTGGGTTTGACCATGGGAAGACAAA
GTGattaatttgacaaaatattttagtATAAC

Coding sequence (CDS) from alignment at scaffold_373:59841..60822

>TCONS_00062911 ID=TCONS_00062911|Name=TCONS_00062911|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_373:59841..60822 (Clytia hemisphaerica)
ATGGCAGACAAGGATGTTACCAACATATCTTGTGATCTTGACACCGAATG
GGTGGAGAAGAATTATCAATCTTCATGGAAAGACAGATTTGAGGAGGATG
GATTCTTGGTCATTCGTGATTTGATTCAGGATGAGAGGGTTGTGAAAAGt
tacatcaaaagttatgaagaacTGTTGGATTCTAGCGAAACGACAGACCA
TCGCTTTGATCTCGGTTCACATAAGGAGGAACAGAACAATGAGAGGAAGA
AAGAGAATATTTGTCAGATCATGTGGCCTTCTATGTACGATGGAACATTT
TTAGAAAGACCTATCTTCAAACGGTTATTAACGGTGGTAAGAAAAATCCT
GGGTGAAGACATGGACTTTGATTTCGATATGCTGATCAACAAATTTCCGT
ATAGCGGAACACCAACTCCTTGGCATCAGGACGAATCATATTGGCCGGAT
ATGCCTGATAAGCGGGCGGTATCGTGTTGGGTTGCCCTTGACGATGCCAC
CGTTGAGAATGGATGCATGTGGTTTGTGAGAGGCTCCCATCAGGAGGAAG
CTCTACGTCCACATAGGAGGGTGAAGGAGGGCCACCATGCAAGGTGTACA
GATTCGTGTAGCGAGAGAGAGGGTCAACCACAACCGTTGAAACGTGGGTC
GTGTACTCTGCATCACGGTCGAACGTTACACTACACGAGAGGAAATAACA
CTGGTACCAATAGACGAGCATACATTATGAACTTTCGACCGAAAGAAATG
GTGCAGTGGGAAAGAGACCGTGGGTTTGACCATGGGAAGACAAAGTGa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039401XLOC_039401Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062911-proteinTCONS_00062911-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062911-exon-scaffold_373-1491911889:59841..60822TCONS_00062911-exon-scaffold_373-1491911889:59841..60822Clytia hemisphaericaexon
TCONS_00062911-exon-scaffold_373-1510915933:59841..60822TCONS_00062911-exon-scaffold_373-1510915933:59841..60822Clytia hemisphaericaexon
TCONS_00062911-exon-scaffold_373-1575043694:59841..60822TCONS_00062911-exon-scaffold_373-1575043694:59841..60822Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_373supercontigscaffold_373:59841..60822 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.103932	0.0508406	0	0	0	0	0.0386758	0	0.185996	0	3.32713	3.20166	5.0559	5.14608	2.51515	1.90697	2.5858	2.60374	0.355	0.389602	0.631484	1.05254	2.41456	2.28687	0.125866	0.134327	1.06976	1.24562
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008775Phytyl_CoA_dOase
Blast
[Close]
BLAST of TCONS_00062911 vs. Swiss-Prot (Human)
Match: PHYD1 (Phytanoyl-CoA dioxygenase domain-containing protein 1 OS=Homo sapiens GN=PHYHD1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.337e-17
Identity = 66/266 (24.81%), Postives = 105/266 (39.47%), Query Frame = -1 
Query:   68 SWKDRFEEDGFLVIRDLIQDERVVK--------------------SYIKSYEELLDSSETTDHRFDLGSHXXXXXXXXXXXNICQIMWP------SMYDGTFLERPIFKRL-----LTVVRKILGEDMDFDF-DMLINKFPYSGTPTPWHQDESYWPDMPDKRAVSCWVALDDATVENGCMWFVRGSHQEEALRPHRRVKEGHHARCTDSCSE--REGQ---PQPLKRGSCTLHHGRTLHYTRGNNTGTNRRAYIMNFRPKEMVQW 754
            S   +F++DGFLV+   +  E  V                      +    EE L +  +TD+    G        +   +     + P       +        P+FK +     +  + + LG  M      M I K P+ G     HQD S+    P  R +  W+A++DAT+ENGC+WF+ GSH     R   R   G     +   SE  R+     P P++RG+  L HG  +H ++ N +  +R+AY  +        W
Sbjct:    7 SQLQKFQQDGFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTEFSTQEEEQLRAQGSTDYFLSSGDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQMPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGSHTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLSDRSRQAYTFHLMEASGTTW 272
The following BLAST results are available for this feature:
BLAST of TCONS_00062911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PHYD11.337e-1724.81Phytanoyl-CoA dioxygenase domain-containing protei... [more]
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