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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062906 ID=TCONS_00062906|Name=TCONS_00062906|organism=Clytia hemisphaerica|type=transcript|length=2325bp
GATTTTCTCTGTTAACTCGCGCCATGCTCGCTCTGTTCTGTGTGTTGCTT
GTGCAGTAATAAAATGTTTCTGTTTGTTTGAAGTTTTGTCATAACTGGGA
TCTTTCAGTGTATCGATTGCTTGTTTCAGGGAGGGAGTTTTTTGAAGCAT
CTACAACTTTGGTATGCTTTAAATTGCTCACCGTTTTGTGATTTTAGGAC
TGGGATCTAAACTAGAGACATCTGGCATATGAtaagatttcaattttgag
gtgaggagaaaaagagaaaatttggaTCATTTCTCTTTGGTTGGATAAAA
ATAAACAGAATATTTTCTCCTCGCTCGTGGACAGGTGGTCTAATAATTTT
CTCTTCTCCTCGACTCCCGTTCatctttgaaataatttttcgataaagaa
aaaaaaaatgaaaaggagAATAAAAAGGTgctacaaaaatgaaaatttaa
acaaTGGTTGTATACTACATTTTCAGGTAACAGGTGGCCTCTACTTCTGT
GTGAAGTATTCGAGAAAATTTGTAAACTCGCtgtaagtagaaaaaaaaac
ttgcgAACAGAGAGTTTGAAATTATGAGCAAACCTTCGTGGATTATTTTT
AAGATACTTGGTAATAATCAAATATCTTGACTTTCTCATACGTTTTGTAT
TTagatattaaaataaaaaaatagatgaTGACACAAGAAAAGTTTCAAAG
AGATGTCAAGAATAAGCTGAAAGGGATATGCGACGACATTGACGTCAAAA
TGGAAGATTTGAAACATGGAGAACGTTCGGTCGATTCTTCGAACAATGAA
AATGTTTCACAATGCAAAAGAAACCGTCGCAAGTGCGCCCCTTCAAAACA
ATATGCTTCCGCTTTGGTTGACTCCAACAACAATTCAGATTCCTCAACAA
CGCATTTCACAACAGAAGTGATCGATATAGAGGAGGAGTGTGTTAAAGCA
AAGCACTCCACAGCCAGCACCACCAAACGAAAAAAGACAAGCCTTGATCA
ACTTTTATCGCGCGCTGTTGcgaagaaacaaaaaattgaacaagaaaaaa
ctgaaaatataatTCGCTATCCACAAGAGAATGAAATAGTTGGACATGGa
caagaaaatggacaaaaacacaatttaaaTGACTCCATTAAATCTAGTAC
ACTGCAACCTGTTCATAAAACAGCAAGAACTATTCAAAGCACTCCCAGGA
TGGATTCTGTAGAAAGTAGAGAAGAAAATGCAGGTGAAGAAAAATGGTAC
CAAAGACCATCATCACCAGCTTTCAGAAAACGCTTTGACCCATATTCGTA
CTATGTACATCCAAAACATGTTTTTTCTCATCCAAATCATGAATACCAGA
AAGACGAACGTTCTCCTTCGCCACCCGTCAAATATCACGTCGAACGTAGG
AGATTCAGGCGTTCCAGATCTCCCCCTACCGAAAAGTTTCGTAAATATCT
AGATTATGAACATTCAAAAAATGCTCGTTCAAAGTACGAGGGACAAATCG
AAAAATTGTCCTCCCCGGGATCAAAACATCGAGAATACAGAGCTTTTGTT
GAGAGACCGAAGTCACCAAATGTGAAAAGAGAAGTCTTTGAGTCACCTAG
TGAGTACACACAACTTGGGAGGTCTCTATCTCCAGGTGGCGAGTATGTAG
AAAACTCTACAACAACAGTTCTACGACCAAAGGCAAGACGTATTTCAACC
CCGTCTACTCTACCACAAAAGCACTTCTATCCAGCGAATTCTCCTGTATA
TCCTCCAAAACCTTCAGCACAAAGTCGCGAAGGTTCGGTATGGTCACCAA
CTGCAACCATATCCAACGAAGTGCCTCGATCTCCAATAGCCGACCAAGCA
GCTCCAACATGCAGCAAAGGTCGCTCATCAAAGTTTTTTCCACCAAATAA
ACGGCAAGTGACCACGAATCAGAGGTATGCAAAGTTAAACAACACACAAC
TTCAAAGACGTTTAGTGGCTAATGCTAGGGAAAGATCAAGGGTACACGCA
TTAAGTAATGCTTTTGATGCGTTGAGAGGTGCTATTCCAAGTTATTCTGT
agatcaaaaactttcaaagttaACAATTTTACGAGTTGCTATTAATTATA
TAGACGCTCTGACACAATTATTAGCACCAAAGACTCCGACAACgcaaaaa
cgttttgaaaaatGTGTGGATGAATGTTCTTCAGTACTACAGCAGGAGta
tggaaaatcaaaaaatcaaataggGAGCGGCAGAGCGAATGGGTCAAATG
AACAAATGCATTaatgtaaattaaatttttttattttatttttatcattt
aatAAATACAGAAAACGAAATTTTA Run BLAST on NCBI protein sequence of Net >TCONS_00062906-protein ID=TCONS_00062906-protein|Name=Net|organism=Clytia hemisphaerica|type=polypeptide|length=529bp
MMTQEKFQRDVKNKLKGICDDIDVKMEDLKHGERSVDSSNNENVSQCKRN
RRKCAPSKQYASALVDSNNNSDSSTTHFTTEVIDIEEECVKAKHSTASTT
KRKKTSLDQLLSRAVAKKQKIEQEKTENIIRYPQENEIVGHGQENGQKHN
LNDSIKSSTLQPVHKTARTIQSTPRMDSVESREENAGEEKWYQRPSSPAF
RKRFDPYSYYVHPKHVFSHPNHEYQKDERSPSPPVKYHVERRRFRRSRSP
PTEKFRKYLDYEHSKNARSKYEGQIEKLSSPGSKHREYRAFVERPKSPNV
KREVFESPSEYTQLGRSLSPGGEYVENSTTTVLRPKARRISTPSTLPQKH
FYPANSPVYPPKPSAQSREGSVWSPTATISNEVPRSPIADQAAPTCSKGR
SSKFFPPNKRQVTTNQRYAKLNNTQLQRRLVANARERSRVHALSNAFDAL
RGAIPSYSVDQKLSKLTILRVAINYIDALTQLLAPKTPTTQKRFEKCVDE
CSSVLQQEYGKSKNQIGSGRANGSNEQMH Run BLAST on NCBI transcript from alignment at scaffold_373:19282..21606 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062906 ID=TCONS_00062906|Name=TCONS_00062906|organism=Clytia hemisphaerica|type=transcript|length=2325bp|location=Sequence derived from alignment at scaffold_373:19282..21606 (Clytia hemisphaerica)
TAAAATTTCGTTTTCTGTATTTattaaatgataaaaataaaataaaaaaa
tttaatttacattAATGCATTTGTTCATTTGACCCATTCGCTCTGCCGCT
CcctatttgattttttgattttccataCTCCTGCTGTAGTACTGAAGAAC
ATTCATCCACACatttttcaaaacgtttttgcGTTGTCGGAGTCTTTGGT
GCTAATAATTGTGTCAGAGCGTCTATATAATTAATAGCAACTCGTAAAAT
TGTtaactttgaaagtttttgatctACAGAATAACTTGGAATAGCACCTC
TCAACGCATCAAAAGCATTACTTAATGCGTGTACCCTTGATCTTTCCCTA
GCATTAGCCACTAAACGTCTTTGAAGTTGTGTGTTGTTTAACTTTGCATA
CCTCTGATTCGTGGTCACTTGCCGTTTATTTGGTGGAAAAAACTTTGATG
AGCGACCTTTGCTGCATGTTGGAGCTGCTTGGTCGGCTATTGGAGATCGA
GGCACTTCGTTGGATATGGTTGCAGTTGGTGACCATACCGAACCTTCGCG
ACTTTGTGCTGAAGGTTTTGGAGGATATACAGGAGAATTCGCTGGATAGA
AGTGCTTTTGTGGTAGAGTAGACGGGGTTGAAATACGTCTTGCCTTTGGT
CGTAGAACTGTTGTTGTAGAGTTTTCTACATACTCGCCACCTGGAGATAG
AGACCTCCCAAGTTGTGTGTACTCACTAGGTGACTCAAAGACTTCTCTTT
TCACATTTGGTGACTTCGGTCTCTCAACAAAAGCTCTGTATTCTCGATGT
TTTGATCCCGGGGAGGACAATTTTTCGATTTGTCCCTCGTACTTTGAACG
AGCATTTTTTGAATGTTCATAATCTAGATATTTACGAAACTTTTCGGTAG
GGGGAGATCTGGAACGCCTGAATCTCCTACGTTCGACGTGATATTTGACG
GGTGGCGAAGGAGAACGTTCGTCTTTCTGGTATTCATGATTTGGATGAGA
AAAAACATGTTTTGGATGTACATAGTACGAATATGGGTCAAAGCGTTTTC
TGAAAGCTGGTGATGATGGTCTTTGGTACCATTTTTCTTCACCTGCATTT
TCTTCTCTACTTTCTACAGAATCCATCCTGGGAGTGCTTTGAATAGTTCT
TGCTGTTTTATGAACAGGTTGCAGTGTACTAGATTTAATGGAGTCAttta
aattgtgtttttgtccattttcttgtCCATGTCCAACTATTTCATTCTCT
TGTGGATAGCGAattatattttcagttttttcttgttcaattttttgttt
cttcgCAACAGCGCGCGATAAAAGTTGATCAAGGCTTGTCTTTTTTCGTT
TGGTGGTGCTGGCTGTGGAGTGCTTTGCTTTAACACACTCCTCCTCTATA
TCGATCACTTCTGTTGTGAAATGCGTTGTTGAGGAATCTGAATTGTTGTT
GGAGTCAACCAAAGCGGAAGCATATTGTTTTGAAGGGGCGCACTTGCGAC
GGTTTCTTTTGCATTGTGAAACATTTTCATTGTTCGAAGAATCGACCGAA
CGTTCTCCATGTTTCAAATCTTCCATTTTGACGTCAATGTCGTCGCATAT
CCCTTTCAGCTTATTCTTGACATCTCTTTGAAACTTTTCTTGTGTCAtca
tctatttttttattttaatatctAAATACAAAACGTATGAGAAAGTCAAG
ATATTTGATTATTACCAAGTATCTTAAAAATAATCCACGAAGGTTTGCTC
ATAATTTCAAACTCTCTGTTcgcaagtttttttttctacttacaGCGAGT
TTACAAATTTTCTCGAATACTTCACACAGAAGTAGAGGCCACCTGTTACC
TGAAAATGTAGTATACAACCAttgtttaaattttcatttttgtagcACCT
TTTTATTctccttttcattttttttttctttatcgaaaaattatttcaaa
gatGAACGGGAGTCGAGGAGAAGAGAAAATTATTAGACCACCTGTCCACG
AGCGAGGAGAAAATATTCTGTTTATTTTTATCCAACCAAAGAGAAATGAt
ccaaattttctctttttctcctcacctcaaaattgaaatcttaTCATATG
CCAGATGTCTCTAGTTTAGATCCCAGTCCTAAAATCACAAAACGGTGAGC
AATTTAAAGCATACCAAAGTTGTAGATGCTTCAAAAAACTCCCTCCCTGA
AACAAGCAATCGATACACTGAAAGATCCCAGTTATGACAAAACTTCAAAC
AAACAGAAACATTTTATTACTGCACAAGCAACACACAGAACAGAGCGAGC
ATGGCGCGAGTTAACAGAGAAAATC Coding sequence (CDS) from alignment at scaffold_373:19282..21606 >TCONS_00062906 ID=TCONS_00062906|Name=TCONS_00062906|organism=Clytia hemisphaerica|type=CDS|length=1590bp|location=Sequence derived from alignment at scaffold_373:19282..21606 (Clytia hemisphaerica)
ttAATGCATTTGTTCATTTGACCCATTCGCTCTGCCGCTCcctatttgat
tttttgattttccataCTCCTGCTGTAGTACTGAAGAACATTCATCCACA
CatttttcaaaacgtttttgcGTTGTCGGAGTCTTTGGTGCTAATAATTG
TGTCAGAGCGTCTATATAATTAATAGCAACTCGTAAAATTGTtaactttg
aaagtttttgatctACAGAATAACTTGGAATAGCACCTCTCAACGCATCA
AAAGCATTACTTAATGCGTGTACCCTTGATCTTTCCCTAGCATTAGCCAC
TAAACGTCTTTGAAGTTGTGTGTTGTTTAACTTTGCATACCTCTGATTCG
TGGTCACTTGCCGTTTATTTGGTGGAAAAAACTTTGATGAGCGACCTTTG
CTGCATGTTGGAGCTGCTTGGTCGGCTATTGGAGATCGAGGCACTTCGTT
GGATATGGTTGCAGTTGGTGACCATACCGAACCTTCGCGACTTTGTGCTG
AAGGTTTTGGAGGATATACAGGAGAATTCGCTGGATAGAAGTGCTTTTGT
GGTAGAGTAGACGGGGTTGAAATACGTCTTGCCTTTGGTCGTAGAACTGT
TGTTGTAGAGTTTTCTACATACTCGCCACCTGGAGATAGAGACCTCCCAA
GTTGTGTGTACTCACTAGGTGACTCAAAGACTTCTCTTTTCACATTTGGT
GACTTCGGTCTCTCAACAAAAGCTCTGTATTCTCGATGTTTTGATCCCGG
GGAGGACAATTTTTCGATTTGTCCCTCGTACTTTGAACGAGCATTTTTTG
AATGTTCATAATCTAGATATTTACGAAACTTTTCGGTAGGGGGAGATCTG
GAACGCCTGAATCTCCTACGTTCGACGTGATATTTGACGGGTGGCGAAGG
AGAACGTTCGTCTTTCTGGTATTCATGATTTGGATGAGAAAAAACATGTT
TTGGATGTACATAGTACGAATATGGGTCAAAGCGTTTTCTGAAAGCTGGT
GATGATGGTCTTTGGTACCATTTTTCTTCACCTGCATTTTCTTCTCTACT
TTCTACAGAATCCATCCTGGGAGTGCTTTGAATAGTTCTTGCTGTTTTAT
GAACAGGTTGCAGTGTACTAGATTTAATGGAGTCAtttaaattgtgtttt
tgtccattttcttgtCCATGTCCAACTATTTCATTCTCTTGTGGATAGCG
AattatattttcagttttttcttgttcaattttttgtttcttcgCAACAG
CGCGCGATAAAAGTTGATCAAGGCTTGTCTTTTTTCGTTTGGTGGTGCTG
GCTGTGGAGTGCTTTGCTTTAACACACTCCTCCTCTATATCGATCACTTC
TGTTGTGAAATGCGTTGTTGAGGAATCTGAATTGTTGTTGGAGTCAACCA
AAGCGGAAGCATATTGTTTTGAAGGGGCGCACTTGCGACGGTTTCTTTTG
CATTGTGAAACATTTTCATTGTTCGAAGAATCGACCGAACGTTCTCCATG
TTTCAAATCTTCCATTTTGACGTCAATGTCGTCGCATATCCCTTTCAGCT
TATTCTTGACATCTCTTTGAAACTTTTCTTGTGTCAtcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062906-exon-scaffold_373-1491911889:19282..21606 | TCONS_00062906-exon-scaffold_373-1491911889:19282..21606 | Clytia hemisphaerica | exon |
| TCONS_00062906-exon-scaffold_373-1510915933:19282..21606 | TCONS_00062906-exon-scaffold_373-1510915933:19282..21606 | Clytia hemisphaerica | exon |
| TCONS_00062906-exon-scaffold_373-1575043694:19282..21606 | TCONS_00062906-exon-scaffold_373-1575043694:19282..21606 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_373 | supercontig | scaffold_373:19282..21606 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
BLAST of TCONS_00062906 vs. Swiss-Prot (Human)
Match: ATOH8 (Protein atonal homolog 8 OS=Homo sapiens GN=ATOH8 PE=2 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 6.609e-19 Identity = 50/111 (45.05%), Postives = 67/111 (60.36%), Query Frame = 3
Query: 1893 PNKRQVTTNQRYAKLNNTQLQRRLVANARERSRVHALSNAFDALRGAIPSYSVDQKLSKLTILRVAINYIDALTQL--LAPKTPTTQKRFEKCVDECSSVLQQEYGKSKNQ 2219
P KR +++ Q RRL+ANARER+RVH +S AF+ALR +P YS QKLSKL ILR+A NYI +L +L L + F +CV C+ LQ E G++K +
Sbjct: 210 PRKRPGEATAASSEIKALQQTRRLLANARERTRVHTISAAFEALRKQVPCYSYGQKLSKLAILRIACNYILSLARLADLDYSADHSNLSFSECVQRCTRTLQAE-GRAKKR 319
The following BLAST results are available for this feature:
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