TCONS_00062904 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062904
Unique NameTCONS_00062904
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2503

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062904 ID=TCONS_00062904|Name=TCONS_00062904|organism=Clytia hemisphaerica|type=transcript|length=2503bp
ATTGGAGAGTTTTATCACCAGTTTCTTTTTAGATAAagtattgtttttca
aaaataaaaaatatgaaaaaagagCTGTTTAGAATAAAAGAATCANGAGA
GTTTTATCACCAGTTTCTTTTTAGATAAagtattgtttttcaaaaataaa
aaatatgaaaaaagagCTGTTTACAATAAAAGAATCATTTATATCGAGGA
TCTAAAAACAGGATGTGACCCGTTTTATAAAGGATCAGGAAGCGAATTTT
GCAAAACCAAAACTTATAGCgataaaattctcaaattcaAAACTAAACAG
AAATGATTCTTGGTGCTGGAGCACTTCACCTAACATAGAGACTAAACAAt
gataatgaaaatattgttttcatgATTCAGCTCAAAATGtataaaatcta
atgaaaaaatTGACTAAGTATTGTTATCTAAACACAGTTCCTTGCATACT
ACCAGGTCCAATTGAAACTTGATCAAGCACCTTCAAGTGATGTGGATTAT
ATTGCTCAATTCGACCTTTCAAGATACTTGGACCAAGAAACTGGCTGAGA
AACTCGAGACAATCAAAAGCAGCACTTTTAGTTAATGCACTGTCACATGT
TGCTGACTCAAAAATGAGATCAAAGAACTGTTCCAGATATTTCTTGAAAA
CACGTTTGGTCAATCCTTTGGCGATATTTGGGATGACTTTGTTGATGGAT
TCAAGGAGATGCAAGTAGTGGGTGTAGTGCTTATGAGTTGCTGCTTGGAT
CATGATAGGAATGTATTTCTCCACCCTGGGTACGGCAGCAGGAACACTTG
ACATCTCACTGAGCAAATAAACACAACCATCGACAGCTTCCCATGGTTCT
GCAGCTCGTTTGAATGAATGATCCATACAACCACCACCACGACGCCCCAT
TTTTGGTGCCAGTGAACCACAAGAATACATTTGCTGGTTGGAATGTAGTT
CTAAATCATTATCTCTTAGTTGTTTGATAACACCATACGTCGCAACGCCT
TTATCCAAGCCCTCATATCTCTCAGAGCTAGATTTTTGCTCCTTGATACC
GTCAAAGTCTTTTGAGACTTGATTGAAGACATACTCAAGAGCTTCTTCAC
CATAAGCTTTGGCGACATTGGTCAAAGCGACAGCCCCTCCCTGGCGAACT
GATGGGATAGGATCGTGGAGATTGTGGAAGAACAGTGGGTAGAAAGTGCT
GAGTAAGGATTTGCTCTCATCTGGAAAGTTCAAGATGAAATTACCACAAG
CAACACAAGCTGTATCTCGAACTGGCCAACTCTcatcttgaaaacaaaag
tgaagtGCTTCAAGAAGTCGTGGAACATGTGGTTTGACTACCTCGTTATC
AATTTTTGAGCTCAATTCCGCCATACAATGACATGCTGCTTCACGTACCG
CATGATTGTCACTCTCTGTCTGTTTCACATAAAAATCAACAATTTCTGTG
ATAAATAAAGCAACATTGGCACGACCCTGGGTTCCCATGATCAACTTCCA
GGATTCTTGGTTGTAAAGCTTGACACCTTCAGCTAAATAGTAGCGATTCA
AACACATAGGTGGCAAAagagttttgaaatataattttttatcttcatct
tCAAAACCCTCAAAGAACTGACGCGTTGCAACAGACGCAGCAAGTCTGAC
TTGACTCCAATTATCAGCCAGTCCAACATAAAGATGTTGAGCAAGTTTCC
CAGCTACGTCATTCTTTGATCCATCTTTTGAAGACACACCGTATCGTGCC
AGTGAGGCGCATAGATAATAACCAGTTTCCCGAACAAATCGATTGGTGTG
ACTCAatgtatcaaaaatcaaatcaagcaGATCCATATTAACGAATTGAA
GAAAATGTTCACCACAACCTTCAATAATGGATTGTAAACCTTTCATACTG
GTTTCCAAAGACTTCCATCCAGCTGTATCATGAAAGATATCTTTGGCATC
TTTATGATCATCTCCATTTTTAACATCGTCTCCAGGAATGTCTCTAGTCA
AGTTCTCCTTGATACTAGCGATCAACTTAGGTTCACATTTTCGGTAAATG
TTAGAATCAATTCGGTTACAAAGGGCCCCTAATAAATCACCAGCAACTAT
ACGAACCCTGAATTCTGGATTTTCCAAATAAGCGAGACCAATTGTTAGAA
AAGTGTCAACGTTGATACCAGAACTGTCATCTCCAATTGACTCAATTAAA
ATCCGTGATGCCTCTAAATGACCAAAGATCTCTTCCCATGTTGATCTATT
CCGTTCATCTGACTGAAGATATGCCAACAAATAATTTTGTAACTTCTGAA
ACTCTTCCTTTGATGATTCTgtatttattttattcttttgtaAAGCAACT
TTGAAACTTAAAGCTCCTTTATCTCTGTCAAGTTTAGCATGGCTACCAAG
TAGTTTCAAAGCTGCTGTAAATGGATCAGtcataatttcttattatttCT
TAAACTAGAAATAGACAAATTATCATTTATGATTTCACGTAACAAATTTT
CAC
Run BLAST on NCBI

transcript from alignment at scaffold_373:99897..103249-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062904 ID=TCONS_00062904|Name=TCONS_00062904|organism=Clytia hemisphaerica|type=transcript|length=3353bp|location=Sequence derived from alignment at scaffold_373:99897..103249- (Clytia hemisphaerica)
ATTGGAGAGTTTTATCACCAGTTTCTTTTTAGATAAAGTATTGTTTTTCA
AAAATAAAAAATATGAAAAAAGAGCTGTTTAGAATAAAAGAATCANGAGA
GTTTTATCACCAGTTTCTTTTTAGATAAAGTATTGTTTTTCAAAAATAAA
AAATATGAAAAAAGAGCTGTTTACAATAAAAGAATCATTTATATCGAGGA
TCTAAAAACAGGATGTGACCCGTTTTATAAAGGATCAGGAAGCGAATTTT
GCAAAACCAAAACTTATAGCGATAAAATTCTCAAATTCAAAACTAAACAG
AAATGATTCTTGGTGCTGGAGCACTTCACCTAACATAGAGACTAAACAAT
GATAATGAAAATATTGTTTTCATGATTCAGCTCAAAATGTATAAAATCTA
ATGAAAAAATTGACTAAGTATTGTTATCTAAACACAGTTCCTTGCATACT
ACCAGGTCCAATTGAAACTTGATCAAGCACCTTCAAGTGATGTGGATTAT
ATTGCTCAATTCGACCTTTCAAGATACTTGGACCAAGAAACTGGCTGAGA
AACTCGAGACAATCAAAAGCAGCACTTTTAGTTAATGCACTGTCACATGT
TGCTGACTCAAAAATGAGATCAAAGAACTGTTCCAGATATTTCTTGAAAA
CACGTTTGGTCAATCCTTTGGCGATATTTGGGATGACTTTGTTGATGGAT
TCAAGGAGATGCAAGTAGTGGGTGTAGTGCTTATGAGTTGCTGCTTGGAT
CATGATAGGAATGTATTTCTCCACCCTGGGTACGGCAGCAGGAACACTTG
ACATCTCACTGAGCAAATAAACACAACCATCGACAGCTTCCCATGGTTCT
GCAGCTCGTTTGAATGAATGATCCATACAACCACCACCACGACGCCCCAT
TTTTGGTGCCAGTGAACCACAAGAATACATTTGCTGGTTGGAATGTAGTT
CTAAATCATTATCTCTTAGTTGTTTGATAACACCATACGTCGCAACGCCT
TTATCCAAGCCCTCATATCTCTCAGAGCTAGATTTTTGCTCCTTGATACC
GTCAAAGTCTTTTGAGACTTGATTGAAGACATACTCAAGAGCTTCTTCAC
CATAAGCTTTGGCGACATTGGTCAAAGCGACAGCCCCTCCCTGGCGAACT
GATGGGATAGGATCGTGGAGATTGTGGAAGAACAGTGGGTAGAAAGTGCT
GAGTAAGGATTTGCTCTCATCTGGAAAGTTCAAGATGAAATTACCACAAG
CAACACAAGCTGTATCTCGAACTGGCCAACTCTCATCTTGAAAACAAAAG
TGAAGTGCTTCAAGAAGTCGTGGAACATGTGGTTTGACTACCTCGTTATC
AATTTTTGAGCTCAATTCCGCCATACAATGACATGCTGCTTCACGTACCG
CATGATTGTCACTCTCTGTCTGTTTCACATAAAAATCAACAATTTCTGTG
ATAAATAAAGCAACATTGGCACGACCCTGGGTTCCCATGATCAACTTCCA
GGATTCTTGGTTGTAAAGCTTGACACCTTCAGCTAAATAGTAGCGATTCA
AACACATAGGTGGCAAAAGAGTTTTGAAATATAATTTTTTATCTTCATCT
TCAAAACCCTCAAAGAACTGACGCGTTGCAACAGACGCAGCAAGTCTGAC
TTGACTCCAATTATCAGCCAGTCCAACATAAAGATGTTGAGCAAGTTTCC
CAGCTACGTCATTCTTTGATCCATCTTTTGAAGACACACCGTATCGTGCC
AGTGAGGCGCATAGATAATAACCAGTTTCCCGAACAAATCGATTGGTGTG
ACTCAATGTATCAAAAATCAAATCAAGCAGATCCATATTAACGAATTGAA
GAAAATGTTCACCACAACCTTCAATAATGGATTGTAAACCTTTCATACTG
GTTTCCAAAGACTTCCATCCAGCTGTATCATGAAAGATATCTTTGGCATC
TTTATGATCATCTCCATTTTTAACATTGTCCNGCCCCTCCCTGGCGAACT
GATGGGATAGGATCGTGGAGATTGTGGAAGAACAGTGGGTAGAAAGTGCT
GAGTAAGGATTTGCTCTCATCTGGAAAGTTCAAGATGAAATTACCACAAG
CAACACAAGCTGTATCTCGAACTGGCCAACTCTCATCTTGAAAACAAAAG
TGAAGTGCTTCAAGAAGTCGTGGAACATGTGGTTTGACTACCTCGTTATC
AATTTTTGAGCTCAATTCCGCCATACAATGACATGCTGCTTCACGTACCG
CATGATTGTCACTCTCTGTCTGTTTCACATAAAAATCAACAATTTCTGTG
ATAAATAAAGCAACATTGGCACGACCCTGGGTTCCCATGATCAACTTCCA
GGATTCTTGGTTGTAAAGCTTGACACCTTCAGCTAAATAGTAGCGATTCA
AACACATAGGTGGCAAAAGAGTTTTGAAATATAATTTTTTATCTTCATCT
TCAAAACCCTCAAAGAACTGACGCGTTGCAACAGACGCAGCAAGTCTGAC
TTGACTCCAATTATCAGCCAGTCCAACATAAAGATGTTGAGCAAGTTTCC
CAGCTACGTCATTCTTTGATCCATCTTTTGAAGACACACCGTATCGTGCC
AGTGAGGCGCATAGATAATAACCAGTTTCCCGAACAAATCGATTGGTGTG
ACTCAATGTATCAAAAATCAAATCAAGCAGATCCATATTAACGAATTGAA
GAAAATGTTCACCACAACCTTCAATAATGGATTGTAAACCTTTCATACTG
GTTTCTAAAGACTTCCATCCAGCTGTATCATGAAAGATATCTTTGGCATC
TTTATGATCATCTCCATTTTTAACATCGTCTCCAGGAATGTCTCTAGTCA
AGTTCTCCTTGATACTAGCGATCAACTTAGGTTCACATTTTCGGTAAATG
TTAGAATCAATTCGGTTACAAAGGGCCCCTAATAAATCACCAGCAACTAT
ACGAACCCTGAATTCTGGATTTTCCAAATAAGCGAGACCAATTGTTAGAA
AAGTGTCAACGTTGATACCAGAACTGTCATCTCCAATTGACTCAATTAAA
ATCCGTGATGCCTCTAAATGACCAAAGATCTCTTCCCATGTTGATCTATT
CCGTTCATCTGACTGAAGATATGCCAACAAATAATTTTGTAACTTCTGAA
ACTCTTCCTTTGATGATTCTGTATTTATTTTATTCTTTTGTAAAGCAACT
TTGAAACTTAAAGCTCCTTTATCTCTGTCAAGTTTAGCATGGCTACCAAG
TAGTTTCAAAGCTGCTGTAAATGGATCAGTCATAATTTCTTATTATTTCT
TAAACTAGAAATAGACAAATTATCATTTATGATTTCACGTAACAAATTTT
CAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039394XLOC_039394Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062904-exon-scaffold_373-1575043694:101276..103249TCONS_00062904-exon-scaffold_373-1575043694:101276..103249Clytia hemisphaericaexon
TCONS_00062904-exon-scaffold_373-1575043694:99897..100425TCONS_00062904-exon-scaffold_373-1575043694:99897..100425Clytia hemisphaericaexon
TCONS_00062904-exon-scaffold_373-1510915933:101276..103249TCONS_00062904-exon-scaffold_373-1510915933:101276..103249Clytia hemisphaericaexon
TCONS_00062904-exon-scaffold_373-1510915933:99897..100425TCONS_00062904-exon-scaffold_373-1510915933:99897..100425Clytia hemisphaericaexon
TCONS_00062904-exon-scaffold_373-1491911889:101276..103249TCONS_00062904-exon-scaffold_373-1491911889:101276..103249Clytia hemisphaericaexon
TCONS_00062904-exon-scaffold_373-1491911889:99897..100425TCONS_00062904-exon-scaffold_373-1491911889:99897..100425Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_373supercontigscaffold_373:99897..103249 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.6886	23.5337	7.72493	6.08829	34.0832	25.7832	32.5762	36.4598	24.2713	31.4062	19.1204	12.9166	15.3183	12.5895	18.6374	23.7076	35.5064	27.1057	8.56781	9.46713	19.9908	20.9311	41.6137	39.4101	15.2441	18.0218	19.3285	15.3792	30.1887	30.3714
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR021133HEAT_type_2
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062904 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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