TCONS_00062903 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062903
Unique Name	TCONS_00062903
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3380

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_373:99865..103244-

transcript sequence

>TCONS_00062903 ID=TCONS_00062903|Name=TCONS_00062903|organism=Clytia hemisphaerica|type=transcript|length=3380bp
AGAGTTTTATCACCAGTTTCTTTTTAGATAAagtattgtttttcaaaaat
aaaaaatatgaaaaaagagCTGTTTAGAATAAAAGAATCANGAGAGTTTT
ATCACCAGTTTCTTTTTAGATAAagtattgtttttcaaaaataaaaaata
tgaaaaaagagCTGTTTACAATAAAAGAATCATTTATATCGAGGATCTAA
AAACAGGATGTGACCCGTTTTATAAAGGATCAGGAAGCGAATTTTGCAAA
ACCAAAACTTATAGCgataaaattctcaaattcaAAACTAAACAGAAATG
ATTCTTGGTGCTGGAGCACTTCACCTAACATAGAGACTAAACAAtgataa
tgaaaatattgttttcatgATTCAGCTCAAAATGtataaaatctaatgaa
aaaatTGACTAAGTATTGTTATCTAAACACAGTTCCTTGCATACTACCAG
GTCCAATTGAAACTTGATCAAGCACCTTCAAGTGATGTGGATTATATTGC
TCAATTCGACCTTTCAAGATACTTGGACCAAGAAACTGGCTGAGAAACTC
GAGACAATCAAAAGCAGCACTTTTAGTTAATGCACTGTCACATGTTGCTG
ACTCAAAAATGAGATCAAAGAACTGTTCCAGATATTTCTTGAAAACACGT
TTGGTCAATCCTTTGGCGATATTTGGGATGACTTTGTTGATGGATTCAAG
GAGATGCAAGTAGTGGGTGTAGTGCTTATGAGTTGCTGCTTGGATCATGA
TAGGAATGTATTTCTCCACCCTGGGTACGGCAGCAGGAACACTTGACATC
TCACTGAGCAAATAAACACAACCATCGACAGCTTCCCATGGTTCTGCAGC
TCGTTTGAATGAATGATCCATACAACCACCACCACGACGCCCCATTTTTG
GTGCCAGTGAACCACAAGAATACATTTGCTGGTTGGAATGTAGTTCTAAA
TCATTATCTCTTAGTTGTTTGATAACACCATACGTCGCAACGCCTTTATC
CAAGCCCTCATATCTCTCAGAGCTAGATTTTTGCTCCTTGATACCGTCAA
AGTCTTTTGAGACTTGATTGAAGACATACTCAAGAGCTTCTTCACCATAA
GCTTTGGCGACATTGGTCAAAGCGACAGCCCCTCCCTGGCGAACTGATGG
GATAGGATCGTGGAGATTGTGGAAGAACAGTGGGTAGAAAGTGCTGAGTA
AGGATTTGCTCTCATCTGGAAAGTTCAAGATGAAATTACCACAAGCAACA
CAAGCTGTATCTCGAACTGGCCAACTCTcatcttgaaaacaaaagtgaag
tGCTTCAAGAAGTCGTGGAACATGTGGTTTGACTACCTCGTTATCAATTT
TTGAGCTCAATTCCGCCATACAATGACATGCTGCTTCACGTACCGCATGA
TTGTCACTCTCTGTCTGTTTCACATAAAAATCAACAATTTCTGTGATAAA
TAAAGCAACATTGGCACGACCCTGGGTTCCCATGATCAACTTCCAGGATT
CTTGGTTGTAAAGCTTGACACCTTCAGCTAAATAGTAGCGATTCAAACAC
ATAGGTGGCAAAagagttttgaaatataattttttatcttcatcttCAAA
ACCCTCAAAGAACTGACGCGTTGCAACAGACGCAGCAAGTCTGACTTGAC
TCCAATTATCAGCCAGTCCAACATAAAGATGTTGAGCAAGTTTCCCAGCT
ACGTCATTCTTTGATCCATCTTTTGAAGACACACCGTATCGTGCCAGTGA
GGCGCATAGATAATAACCAGTTTCCCGAACAAATCGATTGGTGTGACTCA
atgtatcaaaaatcaaatcaagcaGATCCATATTAACGAATTGAAGAAAA
TGTTCACCACAACCTTCAATAATGGATTGTAAACCTTTCATACTGGTTTC
CAAAGACTTCCATCCAGCTGTATCATGAAAGATATCTTTGGCATCTTTAT
GATCATCTCCATTTTTAACATTGTCCNGCCCCTCCCTGGCGAACTGATGG
GATAGGATCGTGGAGATTGTGGAAGAACAGTGGGTAGAAAGTGCTGAGTA
AGGATTTGCTCTCATCTGGAAAGTTCAAGATGAAATTACCACAAGCAACA
CAAGCTGTATCTCGAACTGGCCAACTCTcatcttgaaaacaaaagtgaag
tGCTTCAAGAAGTCGTGGAACATGTGGTTTGACTACCTCGTTATCAATTT
TTGAGCTCAATTCCGCCATACAATGACATGCTGCTTCACGTACCGCATGA
TTGTCACTCTCTGTCTGTTTCACATAAAAATCAACAATTTCTGTGATAAA
TAAAGCAACATTGGCACGACCCTGGGTTCCCATGATCAACTTCCAGGATT
CTTGGTTGTAAAGCTTGACACCTTCAGCTAAATAGTAGCGATTCAAACAC
ATAGGTGGCAAAagagttttgaaatataattttttatcttcatcttCAAA
ACCCTCAAAGAACTGACGCGTTGCAACAGACGCAGCAAGTCTGACTTGAC
TCCAATTATCAGCCAGTCCAACATAAAGATGTTGAGCAAGTTTCCCAGCT
ACGTCATTCTTTGATCCATCTTTTGAAGACACACCGTATCGTGCCAGTGA
GGCGCATAGATAATAACCAGTTTCCCGAACAAATCGATTGGTGTGACTCA
atgtatcaaaaatcaaatcaagcaGATCCATATTAACGAATTGAAGAAAA
TGTTCACCACAACCTTCAATAATGGATTGTAAACCTTTCATACTGGTTTC
TAAAGACTTCCATCCAGCTGTATCATGAAAGATATCTTTGGCATCTTTAT
GATCATCTCCATTTTTAACATCGTCTCCAGGAATGTCTCTAGTCAAGTTC
TCCTTGATACTAGCGATCAACTTAGGTTCACATTTTCGGTAAATGTTAGA
ATCAATTCGGTTACAAAGGGCCCCTAATAAATCACCAGCAACTATACGAA
CCCTGAATTCTGGATTTTCCAAATAAGCGAGACCAATTGTTAGAAAAGTG
TCAACGTTGATACCAGAACTGTCATCTCCAATTGACTCAATTAAAATCCG
TGATGCCTCTAAATGACCAAAGATCTCTTCCCATGTTGATCTATTCCGTT
CATCTGACTGAAGATATGCCAACAAATAATTTTGTAACTTCTGAAACTCT
TCCTTTGATGATTCTgtatttattttattcttttgtaAAGCAACTTTGAA
ACTTAAAGCTCCTTTATCTCTGTCAAGTTTAGCATGGCTACCAAGTAGTT
TCAAAGCTGCTGTAAATGGATCAGtcataatttcttattatttCTTAAAC
TAGAAATAGACAAATTATCATTTATGATTTCACGTAACAAATTTTCACAA
CGTGCAAAGGTTTGAAAATGTTGTCTTTTG

Run BLAST on NCBI

transcript from alignment at scaffold_373:99865..103244-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062903 ID=TCONS_00062903|Name=TCONS_00062903|organism=Clytia hemisphaerica|type=transcript|length=3380bp|location=Sequence derived from alignment at scaffold_373:99865..103244- (Clytia hemisphaerica)
AGAGTTTTATCACCAGTTTCTTTTTAGATAAAGTATTGTTTTTCAAAAAT
AAAAAATATGAAAAAAGAGCTGTTTAGAATAAAAGAATCANGAGAGTTTT
ATCACCAGTTTCTTTTTAGATAAAGTATTGTTTTTCAAAAATAAAAAATA
TGAAAAAAGAGCTGTTTACAATAAAAGAATCATTTATATCGAGGATCTAA
AAACAGGATGTGACCCGTTTTATAAAGGATCAGGAAGCGAATTTTGCAAA
ACCAAAACTTATAGCGATAAAATTCTCAAATTCAAAACTAAACAGAAATG
ATTCTTGGTGCTGGAGCACTTCACCTAACATAGAGACTAAACAATGATAA
TGAAAATATTGTTTTCATGATTCAGCTCAAAATGTATAAAATCTAATGAA
AAAATTGACTAAGTATTGTTATCTAAACACAGTTCCTTGCATACTACCAG
GTCCAATTGAAACTTGATCAAGCACCTTCAAGTGATGTGGATTATATTGC
TCAATTCGACCTTTCAAGATACTTGGACCAAGAAACTGGCTGAGAAACTC
GAGACAATCAAAAGCAGCACTTTTAGTTAATGCACTGTCACATGTTGCTG
ACTCAAAAATGAGATCAAAGAACTGTTCCAGATATTTCTTGAAAACACGT
TTGGTCAATCCTTTGGCGATATTTGGGATGACTTTGTTGATGGATTCAAG
GAGATGCAAGTAGTGGGTGTAGTGCTTATGAGTTGCTGCTTGGATCATGA
TAGGAATGTATTTCTCCACCCTGGGTACGGCAGCAGGAACACTTGACATC
TCACTGAGCAAATAAACACAACCATCGACAGCTTCCCATGGTTCTGCAGC
TCGTTTGAATGAATGATCCATACAACCACCACCACGACGCCCCATTTTTG
GTGCCAGTGAACCACAAGAATACATTTGCTGGTTGGAATGTAGTTCTAAA
TCATTATCTCTTAGTTGTTTGATAACACCATACGTCGCAACGCCTTTATC
CAAGCCCTCATATCTCTCAGAGCTAGATTTTTGCTCCTTGATACCGTCAA
AGTCTTTTGAGACTTGATTGAAGACATACTCAAGAGCTTCTTCACCATAA
GCTTTGGCGACATTGGTCAAAGCGACAGCCCCTCCCTGGCGAACTGATGG
GATAGGATCGTGGAGATTGTGGAAGAACAGTGGGTAGAAAGTGCTGAGTA
AGGATTTGCTCTCATCTGGAAAGTTCAAGATGAAATTACCACAAGCAACA
CAAGCTGTATCTCGAACTGGCCAACTCTCATCTTGAAAACAAAAGTGAAG
TGCTTCAAGAAGTCGTGGAACATGTGGTTTGACTACCTCGTTATCAATTT
TTGAGCTCAATTCCGCCATACAATGACATGCTGCTTCACGTACCGCATGA
TTGTCACTCTCTGTCTGTTTCACATAAAAATCAACAATTTCTGTGATAAA
TAAAGCAACATTGGCACGACCCTGGGTTCCCATGATCAACTTCCAGGATT
CTTGGTTGTAAAGCTTGACACCTTCAGCTAAATAGTAGCGATTCAAACAC
ATAGGTGGCAAAAGAGTTTTGAAATATAATTTTTTATCTTCATCTTCAAA
ACCCTCAAAGAACTGACGCGTTGCAACAGACGCAGCAAGTCTGACTTGAC
TCCAATTATCAGCCAGTCCAACATAAAGATGTTGAGCAAGTTTCCCAGCT
ACGTCATTCTTTGATCCATCTTTTGAAGACACACCGTATCGTGCCAGTGA
GGCGCATAGATAATAACCAGTTTCCCGAACAAATCGATTGGTGTGACTCA
ATGTATCAAAAATCAAATCAAGCAGATCCATATTAACGAATTGAAGAAAA
TGTTCACCACAACCTTCAATAATGGATTGTAAACCTTTCATACTGGTTTC
CAAAGACTTCCATCCAGCTGTATCATGAAAGATATCTTTGGCATCTTTAT
GATCATCTCCATTTTTAACATTGTCCNGCCCCTCCCTGGCGAACTGATGG
GATAGGATCGTGGAGATTGTGGAAGAACAGTGGGTAGAAAGTGCTGAGTA
AGGATTTGCTCTCATCTGGAAAGTTCAAGATGAAATTACCACAAGCAACA
CAAGCTGTATCTCGAACTGGCCAACTCTCATCTTGAAAACAAAAGTGAAG
TGCTTCAAGAAGTCGTGGAACATGTGGTTTGACTACCTCGTTATCAATTT
TTGAGCTCAATTCCGCCATACAATGACATGCTGCTTCACGTACCGCATGA
TTGTCACTCTCTGTCTGTTTCACATAAAAATCAACAATTTCTGTGATAAA
TAAAGCAACATTGGCACGACCCTGGGTTCCCATGATCAACTTCCAGGATT
CTTGGTTGTAAAGCTTGACACCTTCAGCTAAATAGTAGCGATTCAAACAC
ATAGGTGGCAAAAGAGTTTTGAAATATAATTTTTTATCTTCATCTTCAAA
ACCCTCAAAGAACTGACGCGTTGCAACAGACGCAGCAAGTCTGACTTGAC
TCCAATTATCAGCCAGTCCAACATAAAGATGTTGAGCAAGTTTCCCAGCT
ACGTCATTCTTTGATCCATCTTTTGAAGACACACCGTATCGTGCCAGTGA
GGCGCATAGATAATAACCAGTTTCCCGAACAAATCGATTGGTGTGACTCA
ATGTATCAAAAATCAAATCAAGCAGATCCATATTAACGAATTGAAGAAAA
TGTTCACCACAACCTTCAATAATGGATTGTAAACCTTTCATACTGGTTTC
TAAAGACTTCCATCCAGCTGTATCATGAAAGATATCTTTGGCATCTTTAT
GATCATCTCCATTTTTAACATCGTCTCCAGGAATGTCTCTAGTCAAGTTC
TCCTTGATACTAGCGATCAACTTAGGTTCACATTTTCGGTAAATGTTAGA
ATCAATTCGGTTACAAAGGGCCCCTAATAAATCACCAGCAACTATACGAA
CCCTGAATTCTGGATTTTCCAAATAAGCGAGACCAATTGTTAGAAAAGTG
TCAACGTTGATACCAGAACTGTCATCTCCAATTGACTCAATTAAAATCCG
TGATGCCTCTAAATGACCAAAGATCTCTTCCCATGTTGATCTATTCCGTT
CATCTGACTGAAGATATGCCAACAAATAATTTTGTAACTTCTGAAACTCT
TCCTTTGATGATTCTGTATTTATTTTATTCTTTTGTAAAGCAACTTTGAA
ACTTAAAGCTCCTTTATCTCTGTCAAGTTTAGCATGGCTACCAAGTAGTT
TCAAAGCTGCTGTAAATGGATCAGTCATAATTTCTTATTATTTCTTAAAC
TAGAAATAGACAAATTATCATTTATGATTTCACGTAACAAATTTTCACAA
CGTGCAAAGGTTTGAAAATGTTGTCTTTTG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039394	XLOC_039394	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00062903-exon-scaffold_373-1575043694:99865..103244	TCONS_00062903-exon-scaffold_373-1575043694:99865..103244	Clytia hemisphaerica	exon
TCONS_00062903-exon-scaffold_373-1510915933:99865..103244	TCONS_00062903-exon-scaffold_373-1510915933:99865..103244	Clytia hemisphaerica	exon
TCONS_00062903-exon-scaffold_373-1491911889:99865..103244	TCONS_00062903-exon-scaffold_373-1491911889:99865..103244	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_373	supercontig	scaffold_373:99865..103244 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.283175	0.355037	0.137411	0.0448116	2.72769	1.50882	2.08038	1.60679	0.920414	1.26676	0.778712	0.483943	0.511183	0.698511	0.252368	0.295815	0.576998	0.311265	0.129009	0.269997	0.195564	0.686802	0.695748	0.716108	1.47673	1.61761	0.606686	0.236796	0.314302	0.548955

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00062903 vs. Swiss-Prot (Human)

BLAST of TCONS_00062903 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00062903 (transcript) - C. hemisphaerica