TCONS_00062901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062901
Unique NameTCONS_00062901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062901 ID=TCONS_00062901|Name=TCONS_00062901|organism=Clytia hemisphaerica|type=transcript|length=1313bp
AAGAAGAGTTCCCAAAGTCCAAGAAACTGATAAGTAAATAATATACAGgt
acaaagaaaataaatcgaTAAGATGTCAAGAAAGTGTTGTCCCTGCTGTT
CAGTCCTTATTGCATCAATTTGCCTGGCAGTTGTTGGAATCTTGATAGCG
TGTCTGAATTTTGGTGCTATGCCATTATATAAAGGTATTGTAAAGAAGAA
ATTGGTGATGAAAAAAGGTTCAATGACCTACAAAAATTGGGAACATGCAC
CACTACCAGTGTACATGAATTATTACATCTTTAATTACACAAATTTGGAG
GAGATTAAGAATGGAAGCAAACCAATTATTAAAGAGCTGGGACCTTATGC
ATACAGGTGGGAATCTATTTTATGCACAAGTNATGATCTTCAAAGAATTG
TTAAATGGAGAGGTTCTGaTGAAGTGCCTCATTGGTTGACAAAATATGGT
CGAATGATCAATGGTACAGATGGAACACACTTCAAACCTTTTGTTACCAA
GTCAGATCAACTTTATGCATTCATCCCTGATATATGCAGGTCTATTTACA
TCGTGTACGACCAAGAAGATTCAGTACAAAATATCGATCTCTACCGATAT
ACAACAGATGAATATTCCATGTTGAACCATACTGCTAACCCTGACAATGA
AGCATTTTGTGTTGGTGGTTGTGGACCATCAGGAATCATTCCAATCGGAC
AGTGCCAAGACGGAGACCCACCAGTTTATGCATCTGGTGTTCACTTTTAT
CAATCTGATCCCGCCTTGTTTGAAGCTGTTGATGGCTTGAGCAATCCTGA
CAAAGAAAAACACGCCACTTTGATCAGCGTTGAACCTGATACTGGTACCA
CAATGAAAGCAAACAAGCGATTGCAAATCAATGTCAAAGCTGAATACGTT
GAATTCTTCCCaaaaacttatggGTTCCCAAAAGGTGATGGTATCTACTT
TCCAGTGTTTTATGTTGATGAAGAGTTCAAATTAGATGAGGCGAATGCGA
AGACGTTTGAAGATGAAGTGACAAACCCTAAGAAGTACATTGTGGTTTTC
CGATGGGTGTTGGTTGGTCTTGGTGGATTCCTCATCTTGCTCGGTGTTAC
AATGTATGTGTGTCATGCCGTTCGCAATAACGACGCCGAAGACGGATATA
AGAAGTTTTCTGGTCGTTGAGGATGCATTGTTCAAATGgatgatttttct
tcttcaaacaGCTCTGAATTCGAGCAATTTGGCCAATCTTTCGGTGGAGA
TCAATTACTCCACAATGAATTATAGTTAGGGCAGATTAGGGGTATGATTG
TATTACAAATCTC
Run BLAST on NCBI

transcript from alignment at scaffold_373:73516..82761-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062901 ID=TCONS_00062901|Name=TCONS_00062901|organism=Clytia hemisphaerica|type=transcript|length=9246bp|location=Sequence derived from alignment at scaffold_373:73516..82761- (Clytia hemisphaerica)
AAGAAGAGTTCCCAAAGTCCAAGAAACTGATAAGTAAATAATATACAGGT
ATACGTTATCATGTGTTTTTTTATACAGTAATCATTGAATAAATAAATGC
TGAATAATTTTAAAGAACATGCGTTTTAAGGCTGCAAGAAACTATGACTG
GTAAGAACTCTTAGCAGACTCCAGGCATCAGAAGAATGATGGGAAAAAAC
TGGAGATGTAAAACACATATATGTTACAGTATACTTCCAAAACACAAAAA
TAGTTTTTCATAGCTTTTCATTAGACCTGACCCAATCAATCGAACCTGTT
GCACCAATCGAAACAATCAAACTAATCGAACTCCATCGAAATTAATCATC
AAATTAATCATTAAATGTAGTAAATTCATAAACAACAAAACTAATGATAA
TCCTAATGTAAACCAGGTCAATTTCAAACCGTTGAGTATCCAAAATTTAT
TTAAACTTGAAGCATGTAAACTTGTATATAAATTCTTGAATTGTACATTA
AACAAATCATCTTCAGATTTATTCACTCGTCATCCCCGTCTCCATGACAT
CAACCATCCAGCTAGGAGAGACAGTAGCAACAGTGTGGCTGTAACCCATT
TTGATCAAACTGACTGTTCTGTTATGTACAACGCCCCCTTAGCTTGGCAC
CAGTTTGATTGCTACAAAACCACTAAATTCTCTATTCATACTATGAGTCA
TAATCTAAAAAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACGGCTTTGA
AAGCTTAGTATTTATGAGCTAATCGTTCTTAGTTTTTTATTCACTGTACA
TATCTTAAAAACGAGAAGAGACTTATCTTATCTTATCTTATCTTATCTTA
GAACGATTAAAGTTCAATTAAAAAATTCAATCAAACTCTAAAAGATTTTT
TAAAAGATTGTGAGTGTTCGATTAAGTACGATCAATGGGTTTTGGTTCGA
TCAGTTCGATAAACCAATTTTGTTTGACAAGTTTGTACTCTGCTCCGCCA
CCATATATTAGCTTCTTTTCAAAGCCAAATTCGGAATGCAAATCAGGAAA
TTACTTCCGATAACGGATTACACACTTTTCCAGTATCCTTTTAGCGCCAG
AGGTGGTTTGTTGAGGGGGGGAGGGCTGCGTAGCATTCTCCCCCTTTGTC
GCACGCAAAATTGCAAAAGAGGTTCTACAGACTTTATTCTGGATAGACAA
ATATCCGGGTACAATAAACGTCAAGCTGTTAGTTAAGTTTGGGAACTGTC
GAAATGGCAATCGCGTGGCAGGATAAAGTTTTTGCAAGCGAGAGAAGATA
TGAGGATTTAATATCATCAAACTACAATCAAAGTTTTTACTGACGGAACT
AATAGAACTGCTATTGCCTCAAAAATTGTGAGTGTTCGATTAGGTTCGAT
TAATTTTTTTAATCGAACTTTAATCCTTCGATGGAGTTCAATTAGTTCGA
TTGTTCGATTGGTTCAACAAGTTCGATTGATCGGGTCTGGATTAGATTTT
CAGGGATTTCCTCCAGTGTGTTTGACATTATTGAGTGTGGTGTTGGATTC
GGCTTTCAATATAAATGTCAATTGTTATTTATATAATCCATATAATAACT
ACGACTTCTCCAGCTCGATACAATCAATAAGGCCTATAAGTGGCTAAGTA
AAAGGGCCTAAAAGTCCACTAAAAAAAGTTTGTTAAGTTTTTAAAGAGGC
CTACCTAGAGGTCTAGACCTAATCTAATTGAATTGCAAAATGGGCCTATA
AGCAGCTATAAGTCCCTTTGTGGCTTTATTTCCAGGCAATATCAACCAAA
CCCTATTGCTATTGAACTGATTTTCGTAATCGAACCATCGAATTTCATCA
AACAAAATCGATTACTTATCGCAGTTCAATTAAGTTTGATCAGTGTTTTT
GTAGCTCAAATGGTTCCAGTTATGTGCTCCGAGAATGATTTGTGAATAAA
AACTGTAAATCGAACACATCAAACTTATCAATCAAACTAATCGAACTTTA
CCGAAATTTCTCGGTTCAATGACTGTTCGATTTGGTTTGGTAATCGAACA
CCTATCGTTCCATTAAGCTCGATTGAGTTTGATTGGTTGTAATCGAAAAG
TTCGATTGATATCGCCTGGTTATTTTGTTGTGTCATAAGTGAAGGTTTTG
AACTTCAAAAGGCAGAAATTTTTCAAAATTCATGTTTTATTTAACAGCTT
GGTAAAATCTGTGTGTTTCCATTTCTAGAAATTTTGCGCAAGTCATCGAT
GGCGCAAGAAATCAACAAAAGAAACCAATAAAAGATCAAAGAGAAAAGGC
ATAAGTGGGAAAAAGTGATTGTTTGCCAATCTCAAGATTAAGTTGGCGGT
TTTTATGAGTTTTCCTGTGGTATAAATGAAGACTTGCCAGATTGGCAAAC
ATGAAGAAATAGAAGAAACTAAGAATTCATCCCCTGGAAAATATATTTAG
ATTGTTTTATTTTGTTCAATCGCAAACGCTCTTGAAAGCGCCAAATATTT
TATTATCCAATCATAGCGATATCAATTGATTTATTTTATGCAATCAAAAA
ATTGCCGTACCATTGTTAAAAAGAAGTATCCAATCAAATGAAGGTAAAAT
TGGTGCCGTGGTATAGTGGTAGTCGACCTTGGCTTCTGTGCAGGAGGCCA
GGGTTCGATTCCCACTCACGGCAGTTCACTTGGCAAGTGAACGTTCCTTC
GCCCAGGTCAACCCATGCCATGTGAGGGGAATTGGACGTGCTGACGGGAT
GCTCATTAGTAAGCGTCTATAGTTGCCAGAATAGGCCTCTAAAGCCTCCT
GCAACTCAACCAAATAGAAATAGAAATAGAAAACACTTTCATCCAATCAG
AAAGGATTCTTTGAAAAAATAACACTCGCATTAAATTCCCACTTTCGTTT
GCGAACTAAAGATAAGAAAAAAATTCATCCCTTAGAATCAACAATTGAAA
CAAATAAAGTTAAATGACTACTCGTTATCCAAGGTGCTGAAAAGCCATTC
ATCATACACGGCAATCTTATTGGTTGAAATTTAAAAAAGACACTCTAATG
GAGCGAATTATGGAAGCAACTGAGAAGAAGGGACCACTTTCGTTTTTACT
GCAGATTTCGATATAAAAATTGCATAGTTAATACTTCTGTTAATATGTAT
TATGTGTCAACTATGTAAGCATTTTATTGTTGGAATAGAAAAGAGAAGAG
AGGTAAGTCTAGCCTAGCCTAATTGTCAGGGGGTGTAAAAAGAATGTGAG
AGCTTATTTGTATCAAAAGCAAATCACATGGATTTTACCAAGCTGTTTAA
GTCCACTCTGCAAGATTTACTAAGTCTGAAGTTGCACCTGTTACGTACAA
AGATATCTTTTTATTGAAAAAACATCCTCATGGCTTTAAGAAGACATTTA
CTTCAAAGCTTTACAATCAAAAATGGTTTCAGAATCAAGGAAAAACTTTA
ATTGCAATTTTCTCAAAATGACCAAAATGGCCTTAGGCCCCTTTTGAATT
AATAGGGCTCACAGAACTTAGGCCCCTTTTTTTAATTGAGGTAGTGAATT
GATCGACTGACTCTAAAATGATCCATTGATCGCCAATTGATGAAAAAAAC
AAATAGATGATCAATCGATACTCAAGATTTTAGAAGAGGGTTGATATCCA
TTCAATCAATGTATAGCCCTAACTCTCCATTCAAAAATTACGGAAAACTC
ATATTTGGACTTTGTACCCAATGCTCCACACAAGCACTTGAGCTAAAGTC
CTGCAATAGCATTTTTTTTACCCCATTGAAACGCTAAAAAATGCCAATAA
TATAATAATGTCACAACCAAAATCTTTTTGATAATTTTTATAAAGTTGAA
TCTCTTTCACACTTCTAAGTGGTTTTTCAACATTCTTGAGCTCTTCAATT
GGGCTATATGGCTAAAATAGGTAAAACATAAGTAAATATAGCAATTTTAC
CCCCTGAAATGTAAAAAGTGCAAATAAAATATCACAACCTGGAAATTTTT
AATGATTTTAGTGAAGTTCAATCTTTTCCACACTTCTATGAGGTTTTGAA
CCTTTTTGAGCTCTTATGGCGTTATGTGGCTGAAAGAGGTAAAAATAGCA
TTTCTTACGCCCTGAAATGTTAAAAAGTGCCAGTGACAATATAACCTAAA
TTTTTTAACGGTTTCGATAAAGTCCAACATCTCGAAAATCTTTTGTGTCG
GTCATGATGTTCGAATGAAAAGAGAATAAACCATTGACTTGAGAGTTGAA
AATAAATCTCTTATATTCCTGTCTCTTACTTAGCCTATTCTTTTAAAATA
CTCGCTTCCTTTGTAGCTTTCAAGAGTGTTTCTAAAGTTTACTTTAATTT
ACTGCGTTCTTGGTAATTTTATTAACGGTTGTTTCTAAGATTGCTTTTTA
TTGATTTTTTATTGGTTTTCTCCGTAACTTTCAAGAGTGTTTCTAAGATC
ACTTTTATTGATTAGTGTTCTTTATATCTTTCAAGAGTGTTTCTAAGTTA
ACTTTTATCAACTCGCTATCTTTGTAACTTTAAAGGGGTGTTTCTAAGAT
CTATTTTATCAAATCAATTTCTCTGTTACAGTAACGAAAGGTCACTTTTA
TTTTACCTCATAGTGTGCAGAGGGGTCTGAACCCCCCATTAATATTTCAT
CCCCCCCCTATAAAGGTATCCCCCCTATTTTTAAAATTATTTGATCCCGC
ACCATTTACAGGGGTCCGAGCCCCCAGCATATAATTTGTACTCCCAGTAT
TGGGAAGAATTTTGATCTGATTCAAAACAGAGTGCAGTGAGAATAAATCA
GATAAGTCGAAATTATGTGATATTAAATTTTATTGACTTAAATCAACATA
CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCC
CGCCCCCCCCCCCCCCTTAGAAAAGGGGGGGGTTCATACTATGTAACCTA
CTCGCTTTCTCCATAACTTTCAAGACTGTATAATTTTAGAAAAAATATAC
ACTGAATTTATCGTCAGGATTTTGAGATTTCATTTCTGTTGGACATGATG
TCCGATTGACTAAAAATATTTATTTGCAACCCTGCTGATTGACTATTAAC
AAGCAACATAATCACACAAAATCAACTGTCAATCATATACTCAAACAATT
CATAAAAATTAGAACCCAGGTGCTTTTGCTTTCTTTTTCAAGAAAAATAC
AACACGGTTTTGAATGTTTTAGCTGAACAACCAGACCAGATTATTACATT
CGCTATATCCCTTTAGAGCAGAGCATGGTTTTTGCATAATGGATGGTCTG
TTATGAGATTACATCTACCAAGCCATGTTCAAAATCATCGTTTGTTGGTG
TTTAGGTACAAAGAAAATAAATCGATAAGATGTCAAGAAAGTGTTGTCCC
TGCTGTTCAGTCCTTATTGCATCAATTTGCCTGGCAGTTGTTGGAATCTT
GATAGCGTGTCTGAATTTTGGTGCTATGCCATTATATAAAGGTATTGTAA
AGAAGGTATGATTATTTTTATTTATATTTTGTATCCAAACTTTTTCCTGA
TTATGAATTGATGGTAGTTGTCTTTAAATCAACCTTGATTTTTCTTGGAA
ACTTATTAATTTCAACTTCTAATTGAATTTCTATTNATTATTTTTATTTA
TATTTTGTATCCAAACTTCTTCCTGATTATGAATTGATGGTAGTTGTCTT
TTAATCAACCTTGATTTTTCTTGGAAACTTATTAATTTCAACCTCTAATT
GAATTTCTATCACAGAAATTGGTGATGAAAAAAGGTTCAATGACCTACAA
AAATTGGGAACATGCACCACTACCAGTGTACATGAATTATTACATCTTTA
ATTACACAAATTTGGAGGAGATTAAGAATGGAAGCAAACCAATTATTAAA
GAGCTGGGACCTTATGCATACAGGTGGGAATCTATTTTATGCACAAGTNA
TGATCTTCAAAGAATTGTTAAATGGAGAGGTTCTGAGTAAGTTTTCAATT
TTTTATTTCTCATGCCCTTATCTTATTTCCCATCATCCTTTTCTTCATCC
CTTTTGTATCCTACAAATTTTTAAATTGTTTAAAAACTTTCAAGATTCTT
TTTTTTTTGAAATACTCTTAAAACTGATAGCGCAATCAAAATATAACAAT
TAAAACGAATTTGGAAATGATTCAAAAGTAAAAATATGAAAATAATAAAA
CTGTTAGAAGTGCTGTTCGCACGTATGTCAAAAGCAGAAAGAAGAGAACT
TTGACTGATTACAGGGAAGTGAAATATTATGATCTACGTAACCAAATGAC
TTTAAACATCATATGTAGATCTGTTGTTTTCACGCTAAATGAATTGAAAT
ATGGTATCAAATAATTCCTTACCTGTATGGTTTGAGGGAATTAATCAATT
TCAATAACCTTTAAAAATTGGGGTTTGAATACTAATAGTGTAACAACAAT
AAACACACATACAATTTATGCAAATAATCATTATTGAAATATATGATGTC
ATTCTGTTACAGTGAAGTGCCTCATTGGTTGACAAAATATGGTCGAATGA
TCAATGGTACAGGTAATGAAAATGATATTTGTTTTTAGAAAAACTGTTTC
AATTTTGCTAAAAGGCTCTTATTAAAATTGTCAGTGATATTACTAGGAAA
TGGTAAACTCCAGAAATTTAAACATTTCCTAAATCGCCCTCTAGGAATAT
TACCCCTTGGAGAATTAGTCTCTTTAGAAGGCGTTTTGATATTACTTTAC
TCATTTTTAATTTTTTTTTACTATCTATCATTCTATTGTATTGTCAGATG
GAACACACTTCAAACCTTTTGTTACCAAGTCAGATCAACTTTATGCATTC
ATCCCTGATATATGCAGGTACAACCTTATTTTGACCACAATTCAGATGTG
TAATTTGAATTGAAAAACTAGGAATATTTTGAAGATGTAGTGCTTGGGAC
CATTATCAACTGTGTCTAGGTATGAATGTGACAAGAACAAAAATGTTTCT
CCTCTTCACTTTCACCATGCAAGTAAAAAGCTATTTATTTGGCATTTTTT
TAGGTCTATTTACATCGTGTACGACCAAGAAGATTCAGTACAAAATATCG
ATCTCTACCGATATACAACAGATGAATATTCCATGTTGAACCATACTGCT
AACCCTGACAATGAAGCATTTTGTGTTGGTGGTTGTGGACCATCAGGAAT
CATTCCAATCGGACAGTGCCAAGACGGAGGTATAATGAAAATTTGAACAC
TCTTCTATCATCTTTGTTTGTGTCTATTATTATTATAGGGCAAACGAATT
TTTTACCTTCAAAACGATGGAGATCCACTTTCCTCATTTACTTTTTTTAT
GTTTCCAGACCCACCAGTTTATGCATCTGGTGTTCACTTTTATCAATCTG
ATCCCGCCTTGTTTGAAGCTGTTGATGGCTTGAGCAATCCTGACAAAGAA
AAACACGCCACTTTGATCAGCGTTGAACCTGTAAGACTTTTATTACAAGT
TACGCAGATCTAGAAAACTCCCTAAAACTTAGTAAGACTTTTTATTCTCA
CTCACAGGATTTTTCTCTCTGCAAGACCTTTTTTGGCAAGGTGAATTGGT
ATAGAAATGCCAATTTCAAATCGATTGTTTTTATAGTTGATGATAAACTC
NTTTTTTGGCAAGGTGAATTGGTATAGAAATGCCAATTTCAAATCGATTG
GTTTTATAGTTGATGATAAACTCAATATTTATATCTAACCCATCAGGATA
CTGGTACCACAATGAAAGCAAACAAGCGATTGCAAATCAATGTCAAAGCT
GAATACGTTGAATTCTTCCCGTGAGTTTGTTTTGATACCAACTTTCCTAT
CTTCATAGAAAAATCCAAAACATCTATCACTGAACTCACATATTATTTTC
TTTTGTTTTCAGAAAAACTTATGGGTTCCCAAAAGGTGATGGTATCTACT
TTCCAGTGTTTTATGTTGATGAAGTAAGTCAATCTTGTAATTTAATGTTT
AATTCAATTTTTTTGGCCATGAGTTTAAACAACAAAGAAATAATTATTTT
AACTATTTTCGCTTGAAAACTTAGGAGTTCAAATTAGATGAGGCGAATGC
GAAGACGTTTGAAGATGAAGTGACAAACCCTAAGAAGTACATTGTGGTTT
TCCGATGGGTGTTGGTTGGTCTTGGTGGATTCCTCATCTTGCTCGGTGTT
ACAATGTATGTGTGTCATGCCGTTCGCAATAACGACGCCGAAGACGGATA
TAAGAAGGTCAGTGTGTGATTCTCTCCATTACAGATTCGATTGAACTTTC
TAATAAAGTCTCTTTTTTATTAAGTTTTTCTAAAACAACTTCTGTTACTT
AATTTGAAGTCACAAATATATTGGAAGATAGATTTCTTGGATATGTGCTC
TTGATAAATTTCTTCAATAATTTCGTTCCTTGTTTTAGTTTTCTGGTCGT
TGAGGATGCATTGTTCAAATGGATGATTTTTCTTCTTCAAACAGCTCTGA
ATTCGAGCAATTTGGCCAATCTTTCGGTGGAGATCAATTACTCCACAATG
AATTATAGTTAGGGCAGATTAGGGGTATGATTGTATTACAAATCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039392XLOC_039392Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062901-exon-scaffold_373-1575043694:82714..82761TCONS_00062901-exon-scaffold_373-1575043694:82714..82761Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1575043694:76607..76756TCONS_00062901-exon-scaffold_373-1575043694:76607..76756Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1575043694:76126..76346TCONS_00062901-exon-scaffold_373-1575043694:76126..76346Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1575043694:75550..75599TCONS_00062901-exon-scaffold_373-1575043694:75550..75599Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1575043694:75245..75314TCONS_00062901-exon-scaffold_373-1575043694:75245..75314Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1575043694:74883..75058TCONS_00062901-exon-scaffold_373-1575043694:74883..75058Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1575043694:74632..74753TCONS_00062901-exon-scaffold_373-1575043694:74632..74753Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1575043694:74292..74365TCONS_00062901-exon-scaffold_373-1575043694:74292..74365Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1575043694:74139..74199TCONS_00062901-exon-scaffold_373-1575043694:74139..74199Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1575043694:73855..74037TCONS_00062901-exon-scaffold_373-1575043694:73855..74037Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1575043694:73516..73673TCONS_00062901-exon-scaffold_373-1575043694:73516..73673Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1510915933:82714..82761TCONS_00062901-exon-scaffold_373-1510915933:82714..82761Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1510915933:76607..76756TCONS_00062901-exon-scaffold_373-1510915933:76607..76756Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1510915933:76126..76346TCONS_00062901-exon-scaffold_373-1510915933:76126..76346Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1510915933:75550..75599TCONS_00062901-exon-scaffold_373-1510915933:75550..75599Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1510915933:75245..75314TCONS_00062901-exon-scaffold_373-1510915933:75245..75314Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1510915933:74883..75058TCONS_00062901-exon-scaffold_373-1510915933:74883..75058Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1510915933:74632..74753TCONS_00062901-exon-scaffold_373-1510915933:74632..74753Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1510915933:74292..74365TCONS_00062901-exon-scaffold_373-1510915933:74292..74365Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1510915933:74139..74199TCONS_00062901-exon-scaffold_373-1510915933:74139..74199Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1510915933:73855..74037TCONS_00062901-exon-scaffold_373-1510915933:73855..74037Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1510915933:73516..73673TCONS_00062901-exon-scaffold_373-1510915933:73516..73673Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1491911889:82714..82761TCONS_00062901-exon-scaffold_373-1491911889:82714..82761Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1491911889:76607..76756TCONS_00062901-exon-scaffold_373-1491911889:76607..76756Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1491911889:76126..76346TCONS_00062901-exon-scaffold_373-1491911889:76126..76346Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1491911889:75550..75599TCONS_00062901-exon-scaffold_373-1491911889:75550..75599Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1491911889:75245..75314TCONS_00062901-exon-scaffold_373-1491911889:75245..75314Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1491911889:74883..75058TCONS_00062901-exon-scaffold_373-1491911889:74883..75058Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1491911889:74632..74753TCONS_00062901-exon-scaffold_373-1491911889:74632..74753Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1491911889:74292..74365TCONS_00062901-exon-scaffold_373-1491911889:74292..74365Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1491911889:74139..74199TCONS_00062901-exon-scaffold_373-1491911889:74139..74199Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1491911889:73855..74037TCONS_00062901-exon-scaffold_373-1491911889:73855..74037Clytia hemisphaericaexon
TCONS_00062901-exon-scaffold_373-1491911889:73516..73673TCONS_00062901-exon-scaffold_373-1491911889:73516..73673Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_373supercontigscaffold_373:73516..82761 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.8243	14.0411	12.6551	7.05017	13.4016	9.01177	17.1882	16.5667	14.8231	14.7471	20.5489	13.8677	3.53345	3.17862	33.1609	35.1844	29.9095	21.6518	3.06366	5.16911	7.33967	9.69424	13.0016	14.7375	6.07788	11.5804	1.38002e-06	0	39.5305	42.9958
Blast
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BLAST of TCONS_00062901 vs. Swiss-Prot (Human)
Match: SCRB2 (Lysosome membrane protein 2 OS=Homo sapiens GN=SCARB2 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.822e-31
Identity = 71/215 (33.02%), Postives = 110/215 (51.16%), Query Frame = 1 
Query:  385 DLQRIVKWRGSDEVPHWLTKYGRMINGTDGTHFKPFVTKSDQLYAFIPDICRSIYIVYDQEDSVQNIDLYRYTTDEYSMLNHTANPDNEAFCV-XXXXXXXXXXXXXXXDGDPPVYASGVHFYQSDPALFEAVDGLSNPDKEKHATLISVEPDTGTTMKANKRLQINVKAEYVEFFPKTYGFPKGD--GIYFPVFYVDEEFKLDEANAKTFEDEV 1020
            +  +IV+W G   +  W+T    MINGTDG  F P +TK + LY F  D CRS+YI +   +SVQ +  +RY      + N +   DN  FC+  G      +          P+  S  HFYQ+D     A++G+ +P++E H T + + P TG  +KA KR QIN+  + ++ F +T     GD   + FPV Y++E   +D+  A   +  +
Sbjct:  224 NFTKIVEWNGKTSLDWWITDKCNMINGTDGDSFHPLITKDEVLYVFPSDFCRSVYITFSDYESVQGLPAFRYKVPAEILANTS---DNAGFCIPEGNCLGSGVLNVSICKNGAPIIMSFPHFYQADERFVSAIEGM-HPNQEDHETFVDINPLTGIILKAAKRFQINIYVKKLDDFVET-----GDIRTMVFPVMYLNESVHIDKETASRLKSMI 429
The following BLAST results are available for this feature:
BLAST of TCONS_00062901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SCRB22.822e-3133.02Lysosome membrane protein 2 OS=Homo sapiens GN=SCA... [more]
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