TCONS_00062896 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062896
Unique Name	TCONS_00062896
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1878

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_373:72012..77156-

transcript sequence

>TCONS_00062896 ID=TCONS_00062896|Name=TCONS_00062896|organism=Clytia hemisphaerica|type=transcript|length=1878bp
tttctccataactttcaagactgtataattttagaaaaaatatacactga
atTTATCGTCAGGATTTTGAGATTTCATTTCTGTtggacatgatgtccga
ttgactaaaaatatttatttgcaacCCTGCTGATTGACTATTAACAAGCA
ACATAATCACACAAAATCAACTGTCAATCATATACTCAAACAATTCATAA
AAATTAGAACCCAGGtgcttttgctttctttttcaagaaaaatacaacac
ggttttgaatgttttagcTGAACAACCAGACCAGATTATTACATTCGCTa
tatccctttagagcagagcaTGGTTTTTGCATAATGGATGGTCTGTTATG
AGATTACATCTACCAAGCCATGTTCAAAATCATCGTTTGTTGGTGTTTAG
gtacaaagaaaataaatcgaTAAGATGTCAAGAAAGTGTTGTCCCTGCTG
TTCAGTCCTTATTGCATCAATTTGCCTGGCAGTTGTTGGAATCTTGATAG
CGTGTCTGAATTTTGGTGCTATGCCATTATATAAAGGTATTGTAAAGAAG
AAATTGGTGATGAAAAAAGGTTCAATGACCTACAAAAATTGGGAACATGC
ACCACTACCAGTGTACATGAATTATTACATCTTTAATTACACAAATTTGG
AGGAGATTAAGAATGGAAGCAAACCAATTATTAAAGAGCTGGGACCTTAT
GCATACAGGTGGGAATCTATTTTATGCACAAGTNATGATCTTCAAAGAAT
TGTTAAATGGAGAGGTTCTGaTGAAGTGCCTCATTGGTTGACAAAATATG
GTCGAATGATCAATGGTACAGATGGAACACACTTCAAACCTTTTGTTACC
AAGTCAGATCAACTTTATGCATTCATCCCTGATATATGCAGGTCTATTTA
CATCGTGTACGACCAAGAAGATTCAGTACAAAATATCGATCTCTACCGAT
ATACAACAGATGAATATTCCATGTTGAACCATACTGCTAACCCTGACAAT
GAAGCATTTTGTGTTGGTGGTTGTGGACCATCAGGAATCATTCCAATCGG
ACAGTGCCAAGACGGAGACCCACCAGTTTATGCATCTGGTGTTCACTTTT
ATCAATCTGATCCCGCCTTGTTTGAAGCTGTTGATGGCTTGAGCAATCCT
GACAAAGAAAAACACGCCACTTTGATCAGCGTTGAACCTGATACTGGTAC
CACAATGAAAGCAAACAAGCGATTGCAAATCAATGTCAAAGCTGAATACG
TTGAATTCTTCCCaaaaacttatggGTTCCCAAAAGGTGATGGTATCTAC
TTTCCAGTGTTTTATGTTGATGAAGAGTTCAAATTAGATGAGGCGAATGC
GAAGACGTTTGAAGATGAAGTGACAAACCCTAAGAAGTACATTGTGGTTT
TCCGATGGGTGTTGGTTGGTCTTGGTGGATTCCTCATCTTGCTCGGTGTT
ACAATGTATGTGTGTCATGCCGTTCGCAATAACGACGCCGAAGACGGATA
TAAGAAGTTTTCTGGTCGTTGAGGATGCATTGTTCAAATGgatgattttt
cttcttcaaacaGCTCTGAATTCGAGCAATTTGGCCAATCTTTCGGTGGA
GATCAATTACTCCACAATGAATTATAGTTAGGGCAGATTAGGGGTATGAT
TGTATTACAAATCTCATGTTTATCTTaagaattttagaaaaatgtagGAG
TTATTGTATGATTATTGTTGATATTTGATAGAGTatttttcttatatatt
ttgtattttcgagttGATGGAAGTTGTGCTCGATGGCATAAACTTTGGAT
GCTCTTTATTGTTACTGGTTAACTTTTCAAGAGCTGGCAAAGGGAAAGGC
TTGCCTTTTCATAAATATGAGAGATCCC

Run BLAST on NCBI

transcript from alignment at scaffold_373:72012..77156-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062896 ID=TCONS_00062896|Name=TCONS_00062896|organism=Clytia hemisphaerica|type=transcript|length=5145bp|location=Sequence derived from alignment at scaffold_373:72012..77156- (Clytia hemisphaerica)
TTTCTCCATAACTTTCAAGACTGTATAATTTTAGAAAAAATATACACTGA
ATTTATCGTCAGGATTTTGAGATTTCATTTCTGTTGGACATGATGTCCGA
TTGACTAAAAATATTTATTTGCAACCCTGCTGATTGACTATTAACAAGCA
ACATAATCACACAAAATCAACTGTCAATCATATACTCAAACAATTCATAA
AAATTAGAACCCAGGTGCTTTTGCTTTCTTTTTCAAGAAAAATACAACAC
GGTTTTGAATGTTTTAGCTGAACAACCAGACCAGATTATTACATTCGCTA
TATCCCTTTAGAGCAGAGCATGGTTTTTGCATAATGGATGGTCTGTTATG
AGATTACATCTACCAAGCCATGTTCAAAATCATCGTTTGTTGGTGTTTAG
GTACAAAGAAAATAAATCGATAAGATGTCAAGAAAGTGTTGTCCCTGCTG
TTCAGTCCTTATTGCATCAATTTGCCTGGCAGTTGTTGGAATCTTGATAG
CGTGTCTGAATTTTGGTGCTATGCCATTATATAAAGGTATTGTAAAGAAG
GTATGATTATTTTTATTTATATTTTGTATCCAAACTTTTTCCTGATTATG
AATTGATGGTAGTTGTCTTTAAATCAACCTTGATTTTTCTTGGAAACTTA
TTAATTTCAACTTCTAATTGAATTTCTATTNATTATTTTTATTTATATTT
TGTATCCAAACTTCTTCCTGATTATGAATTGATGGTAGTTGTCTTTTAAT
CAACCTTGATTTTTCTTGGAAACTTATTAATTTCAACCTCTAATTGAATT
TCTATCACAGAAATTGGTGATGAAAAAAGGTTCAATGACCTACAAAAATT
GGGAACATGCACCACTACCAGTGTACATGAATTATTACATCTTTAATTAC
ACAAATTTGGAGGAGATTAAGAATGGAAGCAAACCAATTATTAAAGAGCT
GGGACCTTATGCATACAGGTGGGAATCTATTTTATGCACAAGTNATGATC
TTCAAAGAATTGTTAAATGGAGAGGTTCTGAGTAAGTTTTCAATTTTTTA
TTTCTCATGCCCTTATCTTATTTCCCATCATCCTTTTCTTCATCCCTTTT
GTATCCTACAAATTTTTAAATTGTTTAAAAACTTTCAAGATTCTTTTTTT
TTTGAAATACTCTTAAAACTGATAGCGCAATCAAAATATAACAATTAAAA
CGAATTTGGAAATGATTCAAAAGTAAAAATATGAAAATAATAAAACTGTT
AGAAGTGCTGTTCGCACGTATGTCAAAAGCAGAAAGAAGAGAACTTTGAC
TGATTACAGGGAAGTGAAATATTATGATCTACGTAACCAAATGACTTTAA
ACATCATATGTAGATCTGTTGTTTTCACGCTAAATGAATTGAAATATGGT
ATCAAATAATTCCTTACCTGTATGGTTTGAGGGAATTAATCAATTTCAAT
AACCTTTAAAAATTGGGGTTTGAATACTAATAGTGTAACAACAATAAACA
CACATACAATTTATGCAAATAATCATTATTGAAATATATGATGTCATTCT
GTTACAGTGAAGTGCCTCATTGGTTGACAAAATATGGTCGAATGATCAAT
GGTACAGGTAATGAAAATGATATTTGTTTTTAGAAAAACTGTTTCAATTT
TGCTAAAAGGCTCTTATTAAAATTGTCAGTGATATTACTAGGAAATGGTA
AACTCCAGAAATTTAAACATTTCCTAAATCGCCCTCTAGGAATATTACCC
CTTGGAGAATTAGTCTCTTTAGAAGGCGTTTTGATATTACTTTACTCATT
TTTAATTTTTTTTTACTATCTATCATTCTATTGTATTGTCAGATGGAACA
CACTTCAAACCTTTTGTTACCAAGTCAGATCAACTTTATGCATTCATCCC
TGATATATGCAGGTACAACCTTATTTTGACCACAATTCAGATGTGTAATT
TGAATTGAAAAACTAGGAATATTTTGAAGATGTAGTGCTTGGGACCATTA
TCAACTGTGTCTAGGTATGAATGTGACAAGAACAAAAATGTTTCTCCTCT
TCACTTTCACCATGCAAGTAAAAAGCTATTTATTTGGCATTTTTTTAGGT
CTATTTACATCGTGTACGACCAAGAAGATTCAGTACAAAATATCGATCTC
TACCGATATACAACAGATGAATATTCCATGTTGAACCATACTGCTAACCC
TGACAATGAAGCATTTTGTGTTGGTGGTTGTGGACCATCAGGAATCATTC
CAATCGGACAGTGCCAAGACGGAGGTATAATGAAAATTTGAACACTCTTC
TATCATCTTTGTTTGTGTCTATTATTATTATAGGGCAAACGAATTTTTTA
CCTTCAAAACGATGGAGATCCACTTTCCTCATTTACTTTTTTTATGTTTC
CAGACCCACCAGTTTATGCATCTGGTGTTCACTTTTATCAATCTGATCCC
GCCTTGTTTGAAGCTGTTGATGGCTTGAGCAATCCTGACAAAGAAAAACA
CGCCACTTTGATCAGCGTTGAACCTGTAAGACTTTTATTACAAGTTACGC
AGATCTAGAAAACTCCCTAAAACTTAGTAAGACTTTTTATTCTCACTCAC
AGGATTTTTCTCTCTGCAAGACCTTTTTTGGCAAGGTGAATTGGTATAGA
AATGCCAATTTCAAATCGATTGTTTTTATAGTTGATGATAAACTCNTTTT
TTGGCAAGGTGAATTGGTATAGAAATGCCAATTTCAAATCGATTGGTTTT
ATAGTTGATGATAAACTCAATATTTATATCTAACCCATCAGGATACTGGT
ACCACAATGAAAGCAAACAAGCGATTGCAAATCAATGTCAAAGCTGAATA
CGTTGAATTCTTCCCGTGAGTTTGTTTTGATACCAACTTTCCTATCTTCA
TAGAAAAATCCAAAACATCTATCACTGAACTCACATATTATTTTCTTTTG
TTTTCAGAAAAACTTATGGGTTCCCAAAAGGTGATGGTATCTACTTTCCA
GTGTTTTATGTTGATGAAGTAAGTCAATCTTGTAATTTAATGTTTAATTC
AATTTTTTTGGCCATGAGTTTAAACAACAAAGAAATAATTATTTTAACTA
TTTTCGCTTGAAAACTTAGGAGTTCAAATTAGATGAGGCGAATGCGAAGA
CGTTTGAAGATGAAGTGACAAACCCTAAGAAGTACATTGTGGTTTTCCGA
TGGGTGTTGGTTGGTCTTGGTGGATTCCTCATCTTGCTCGGTGTTACAAT
GTATGTGTGTCATGCCGTTCGCAATAACGACGCCGAAGACGGATATAAGA
AGGTCAGTGTGTGATTCTCTCCATTACAGATTCGATTGAACTTTCTAATA
AAGTCTCTTTTTTATTAAGTTTTTCTAAAACAACTTCTGTTACTTAATTT
GAAGTCACAAATATATTGGAAGATAGATTTCTTGGATATGTGCTCTTGAT
AAATTTCTTCAATAATTTCGTTCCTTGTTTTAGTTTTCTGGTCGTTGAGG
ATGCATTGTTCAAATGGATGATTTTTCTTCTTCAAACAGCTCTGAATTCG
AGCAATTTGGCCAATCTTTCGGTGGAGATCAATTACTCCACAATGAATTA
TAGTTAGGGCAGATTAGGGGTATGATTGTATTACAAATCTCATGTTTATC
TTAAGAATTTTAGAAAAATGTAGGAGTTATTGTATGATTANTTATAGGGC
AAACGAATTTTTTACCTTCAAAACGATGGAGATCCACTTTCCTCATTTAC
TTTTTTTATGTTTCCAGACCCACCAGTTTATGCATCTGGTGTTCACTTTT
ATCAATCTGATCCCGCCTTGTTTGAAGCTGTTGATGGCTTGAGCAATCCT
GACAAAGAAAAACACGCCACTTTGATCAGCGTTGAACCTGTAAGACTTTT
ATTAGAAGTTACGCAGATCTAGAAAACTCCCTAAAACTTAGTAAGACTTT
TTATTCTCACTCACAGGATTTTTCTCTCTGCAAGACCTTTTTTGGCAAGG
TGAATTGGTATAGAAATGCCAATTTCAAATCGATTGGTTTTATAGTTGAT
GATAAACTCAATATTTATATCTAACCCATCAGGATACTGGTACCACAATG
AAAGCAAACAAGCGATTGCAAATCAATGTCAAAGCTGAATACGTTGAATT
CTTCCCGTGAGTTTGCTTTGATACCAACTTTCCTATCTTCATAGAAAAAT
CCAAAACATCTATCACTGAACTCACATATTATTTTCTTTTGTTTTCAGAA
AAACTTATGGGTTCCCAAAAGGTGATGGTATCTACTTTCCAGTGTTTTAT
GTTGATGAAGTAAGTCAATCTTGTAATTTAATGTTTAATTCCATTTTTTT
GGCCATGAGTTTAAACAACAAAGAAATAATTATTTTAACTATTTTCGCTT
GAAAATTTAGGAGTTCAAATTAGATGAGGCGAATGCGAAGACGTTTGAAG
ATGAAGTGACAAACCCTAAGAAGTACATTGTGGTTTTCCGATGGGTGTTG
GTTGGTCTTGGTGGATTCCTCATCTTGCTCGGTGTTACAATGTATGTGTG
TCATGCCGTTCGCAATAACGACGCCGAAGACGGATATAAGAAGGTCAGTG
TGTGATTCTCTCCATTACAGATTCGATTGAACTTTCTAATAAAGTCTCTT
TTTTATTAAGTTTTTCTAAAACAACTTCTGTTACTTAATTTGAAGTCACA
AATATATTGGAAGATAGATTTCTTGGATATGTGCTCTTGATAAATTTCTT
CAATAATTTCGTTCCTTGTTTTAGTTTTCTGGTCGTTGAGGATGCATTGT
TCAAATGGATGATTTTTCTTCTTCAAACAGCTCTGAATTCGAGCAATTTG
GCCAATCTTTCGGTGGAGATCAATTACTCCACAATGAATTATAGTTAGGG
CAGATTAGGGGTATGATTGTATTACAAATCTCATGTTTATCTTAAGAATT
TTAGAAAAATGTAGGAGTTATTGTATGATTATTGTTGATATTTGATAGAG
TATTTTTCTTATATATTTTGTATTTTCGAGTTGATGGAAGTTGTGCTCGA
TGGCATAAACTTTGGATGCTCTTTATTGTTACTGGTTAACTTTTCAAGAG
CTGGCAAAGGGAAAGGCTTGCCTTTTCATAAATATGAGAGATCCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039392	XLOC_039392	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_373	supercontig	scaffold_373:72012..77156 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0102695	0.865772	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.000130519	0	0	0	0	0

Blast

[Close]

BLAST of TCONS_00062896 vs. Swiss-Prot (Human)
Match: SCRB2 (Lysosome membrane protein 2 OS=Homo sapiens GN=SCARB2 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.039e-30
Identity = 71/215 (33.02%), Postives = 110/215 (51.16%), Query Frame = 2

Query:  737 DLQRIVKWRGSDEVPHWLTKYGRMINGTDGTHFKPFVTKSDQLYAFIPDICRSIYIVYDQEDSVQNIDLYRYTTDEYSMLNHTANPDNEAFCV-XXXXXXXXXXXXXXXDGDPPVYASGVHFYQSDPALFEAVDGLSNPDKEKHATLISVEPDTGTTMKANKRLQINVKAEYVEFFPKTYGFPKGD--GIYFPVFYVDEEFKLDEANAKTFEDEV 1372
            +  +IV+W G   +  W+T    MINGTDG  F P +TK + LY F  D CRS+YI +   +SVQ +  +RY      + N +   DN  FC+  G      +          P+  S  HFYQ+D     A++G+ +P++E H T + + P TG  +KA KR QIN+  + ++ F +T     GD   + FPV Y++E   +D+  A   +  +
Sbjct:  224 NFTKIVEWNGKTSLDWWITDKCNMINGTDGDSFHPLITKDEVLYVFPSDFCRSVYITFSDYESVQGLPAFRYKVPAEILANTS---DNAGFCIPEGNCLGSGVLNVSICKNGAPIIMSFPHFYQADERFVSAIEGM-HPNQEDHETFVDINPLTGIILKAAKRFQINIYVKKLDDFVET-----GDIRTMVFPVMYLNESVHIDKETASRLKSMI 429

The following BLAST results are available for this feature:

BLAST of TCONS_00062896 vs. Swiss-Prot (Human)

BLAST of TCONS_00062896 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SCRB2	2.039e-30	33.02	Lysosome membrane protein 2 OS=Homo sapiens GN=SCA...	[more]

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TCONS_00062896 (transcript) - C. hemisphaerica