TCONS_00062889 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062889
Unique Name	TCONS_00062889
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	4645

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_373:64516..77156-

transcript sequence

>TCONS_00062889 ID=TCONS_00062889|Name=TCONS_00062889|organism=Clytia hemisphaerica|type=transcript|length=4645bp
tttctccataactttcaagactgtataattttagaaaaaatatacactga
atTTATCGTCAGGATTTTGAGATTTCATTTCTGTtggacatgatgtccga
ttgactaaaaatatttatttgcaacCCTGCTGATTGACTATTAACAAGCA
ACATAATCACACAAAATCAACTGTCAATCATATACTCAAACAATTCATAA
AAATTAGAACCCAGGtgcttttgctttctttttcaagaaaaatacaacac
ggttttgaatgttttagcTGAACAACCAGACCAGATTATTACATTCGCTa
tatccctttagagcagagcaTGGTTTTTGCATAATGGATGGTCTGTTATG
AGATTACATCTACCAAGCCATGTTCAAAATCATCGTTTGTTGGTGTTTAG
gtacaaagaaaataaatcgaTAAGATGTCAAGAAAGTGTTGTCCCTGCTG
TTCAGTCCTTATTGCATCAATTTGCCTGGCAGTTGTTGGAATCTTGATAG
CGTGTCTGAATTTTGGTGCTATGCCATTATATAAAGGTATTGTAAAGAAG
AAATTGGTGATGAAAAAAGGTTCAATGACCTACAAAAATTGGGAACATGC
ACCACTACCAGTGTACATGAATTATTACATCTTTAATTACACAAATTTGG
AGGAGATTAAGAATGGAAGCAAACCAATTATTAAAGAGCTGGGACCTTAT
GCATACAGGTGGGAATCTATTTTATGCACAAGTNATGATCTTCAAAGAAT
TGTTAAATGGAGAGGTTCTGaTGAAGTGCCTCATTGGTTGACAAAATATG
GTCGAATGATCAATGGTACAGATGGAACACACTTCAAACCTTTTGTTACC
AAGTCAGATCAACTTTATGCATTCATCCCTGATATATGCAGGTCTATTTA
CATCGTGTACGACCAAGAAGATTCAGTACAAAATATCGATCTCTACCGAT
ATACAACAGATGAATATTCCATGTTGAACCATACTGCTAACCCTGACAAT
GAAGCATTTTGTGTTGGTGGTTGTGGACCATCAGGAATCATTCCAATCGG
ACAGTGCCAAGACGGAGACCCACCAGTTTATGCATCTGGTGTTCACTTTT
ATCAATCTGATCCCGCCTTGTTTGAAGCTGTTGATGGCTTGAGCAATCCT
GACAAAGAAAAACACGCCACTTTGATCAGCGTTGAACCTGATACTGGTAC
CACAATGAAAGCAAACAAGCGATTGCAAATCAATGTCAAAGCTGAATACG
TTGAATTCTTCCCaaaaacttatggGTTCCCAAAAGGTGATGGTATCTAC
TTTCCAGTGTTTTATGTTGATGAAGAGTTCAAATTAGATGAGGCGAATGC
GAAGACGTTTGAAGATGAAGTGACAAACCCTAAGAAGTACATTGTGGTTT
TCCGATGGGTGTTGGTTGGTCTTGGTGGATTCCTCATCTTGCTCGGTGTT
ACAATGTATGTGTGTCATGCCGTTCGCAATAACGACGCCGAAGACGGATA
TAAGAAGTTTTCTGGTCGTTGAGGATGCATTGTTCAAATGgatgattttt
cttcttcaaacaGCTCTGAATTCGAGCAATTTGGCCAATCTTTCGGTGGA
GATCAATTACTCCACAATGAATTATAGTTAGGGCAGATTAGGGGTATGAT
TGTATTACAAATCTCATGTTTATCTTaagaattttagaaaaatgtagGAG
TTATTGTATGATTATTGTTGATATTTGATAGAGTatttttcttatatatt
ttgtattttcgagttGATGGAAGTTGTGCTCGATGGCATAAACTTTGGAT
GCTCTTTATTGTTACTGGTTAACTTTTCAAGAGCTGGCAAAGGGAAAGGC
TTGCCTTTTCATAAATATGAGAGATCCCTACTGCATAATgcattaaaaca
ttttttgacacTCTTCTGTGTTGAAATTACACGCAAGTGTTTGTTTTACA
TTTCCCTACATGGACGATTTTCTTAAGGCGTTTCaaattacattttttat
aagcatttgttaagaatatttatggATAATTCTTGTTTGATTTGATTGTA
TTGAAAATCAATTAGACATTGGCCCTCAGTAACCTTGTAATCTGCCCTTT
ATATATGGCATTGATTAAGCTTTACTAAATTTTGGTCGAGGTACATGACC
TCTCCCAGTTGAACTTTATCCTTACATTCTCTTAAACTTAGTACCACTTA
AGCAAGTCTTACATACATCATATCAATTTCACGATTCTGTCTAAGAAACA
ATTACAATCATTAGTCCAATTTTCTaggatttcgaaattcaatgtgTTGA
TTTCATAggattctttgttaaaaatttttatacCAAAGTCTTGATATTCA
AGAAAGAGATTTGTATGGATTTTCtagataatttttaaaaacatttattt
ttcaggattctttttaaaattgaattaatATAATAGAAGCTAAGGTATAG
ATTACTCTTTATTACATAGAGTCGTCTTGTGATGGATTAAAGTTGCTTAT
AGTTTTTCGAAAGAGATCGGTTCAGATATTTGGAACTTCTGTATAGttga
ttttagtttttatcGCAATCTTTGTTCAATATCATTAATAAATACAGTGT
TTATATTTctagaataaaaaaagaaaaaaaccaaacaaaaaaaaaacaaa
tacgTTATGGGTGAAGAAAAAGGTGGTCGTTGCTGTCGATGCTGCACGAC
TGTTGTCACAATTTCCATTCTCATTGTTGTCAGTGTTCTTTTCATCTGTT
TGGGAGCTGGATCCATCCCTTTTCTCACCAACTTTTATAAAGATACAGTA
CTAAAGCAATTGGTGATGAAATATTCGGATTCTTCTGGAGGGAACGAAGC
TTACAAGAATTGGAATTCTCCTCCAGCACCTGTCTACATGCAGTTTTATA
TGTTTAATTACACGAATGTTGACGAAATCATCAATGAAAAAGCTAAACCC
AATGTCACTCAACTCGGCCCATACTCCTACAGAGAGGTCCGAGAGAATGT
GATTCTTCAccaaaacgaaaatgaaatcacatacttacAAAATTATTCAT
ACGTTTTCGACCCTGCTACTTCATGTGCTAACTGCTCAGAAAATGATACG
ATCATCACTCCGAACCTTGCTGTCATCacatttcaaacaaaattgaaggA
TTTGAACATCACACCACAATCAGGATTTGTCAAGAGATGGGCCATTGAAG
CTTTAGATAAACTGTTGAATAATGACAAAACGTACAAAATGTTCATACCT
TTGCCAGTGCATGAACTGTTATGGGGATACACCAGTCCGTTCCTCGATCA
TCTGGAAGGTCTCATACCAAAAGTCATACGGAACCTCATTCCGAACCTAC
CCCCGCCTTTTATAGCTTTACAGCAAAACGGTACAGCAGGTGCAGTGGCG
GTTGGAAATATCACCATTCTTACGGGCAATGAAGATATCAATAAAGTTCA
AATAACAACTAAATGGAGGGGGAAAAATTCCACAGGTTCTTGGAATGGAG
ACAAGTTTACAAATTTTTGGCAAACACCTTATGGCAATATGATCAATGGA
ACAGATGGATCCCACTTTCAACCTTACATCTCgaaagatgacgtcattta
caTTTTCAATCCTCAGTTATGCAGGTCGTTGTATTTGAATTATCAGAGAG
ATACAAGCATTATGGACATCAAATTATTACGCTACACAACGAGGGCGAAA
ATCTTCCAAAATTACACTGCCAACCCAGACAACAAAGCTTTCTGTGGTCC
GAAACGTTGTTATCCAAGTGGCCTGTTACCAGTGGGACAGTGCCAGCCTG
GCAATCCTCCAGTCTTTATGTCATCGCCACATTTCTACCAAGGATACCCA
GCATTGTGGCAATCTTTCAACGGGCTACATCCTGAGACAGATTTGCACGA
AACGTATTTAAGTATTGAACCGACAACTGGGATCGTCATGGATGCACACA
AACGTCTTCAAATCAACGTCAATATTCAAAAAGTCCCTTATATTTCGAGA
ACAGATGTATTTCCAGAGCAAGATAATTTCTATCCTGTTTTGTTTGTGCA
TGAGTATGCCACCATTGACAAAGCATCAGCAGATAGGTTCAAGAAAGAAG
TAATGTTACCAAAGCAGATGATCACTATAATGGAATATGGTTTGATCGGC
CTGGGTGGCCTCTTTCTCATCATTGCTCTTGTATTGGGTGCAAgacatca
aagaaaaaagaatcaacAATCCGTCTATACAGAATTTTCGAATGAGGACA
ATGAAAAGAACATACAACAGaaaaaaggacaTTGACGAACAACCAAATGA
GACTGCTAGGCTGATAATGACTTAATTAAAATACTAATGACTACTAAGTT
TTAAATGACAGGGACAGATAGTTTTTTCTAACCTAGCGGTTTTTCTACGT
CGTAACATTTTAGtcatctttgaaaaaaagttctttttttgctctttttt
aatGGTAATGTGAGTTATTACCGGCATATTTAAGAAagtaaaatttctca
aaaaagtaaTTGTTTTAACtgacatttaattattttacaATTGATTTAAC
ACACGAAAATTTTATTTAGAAGTATTTTGTATCTTGTAAATAGCATTTTG
AAGTATAATTTAGACAATGATTTCTGGAAATATATTTCTTTTCAT

Run BLAST on NCBI

transcript from alignment at scaffold_373:64516..77156-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062889 ID=TCONS_00062889|Name=TCONS_00062889|organism=Clytia hemisphaerica|type=transcript|length=12641bp|location=Sequence derived from alignment at scaffold_373:64516..77156- (Clytia hemisphaerica)
TTTCTCCATAACTTTCAAGACTGTATAATTTTAGAAAAAATATACACTGA
ATTTATCGTCAGGATTTTGAGATTTCATTTCTGTTGGACATGATGTCCGA
TTGACTAAAAATATTTATTTGCAACCCTGCTGATTGACTATTAACAAGCA
ACATAATCACACAAAATCAACTGTCAATCATATACTCAAACAATTCATAA
AAATTAGAACCCAGGTGCTTTTGCTTTCTTTTTCAAGAAAAATACAACAC
GGTTTTGAATGTTTTAGCTGAACAACCAGACCAGATTATTACATTCGCTA
TATCCCTTTAGAGCAGAGCATGGTTTTTGCATAATGGATGGTCTGTTATG
AGATTACATCTACCAAGCCATGTTCAAAATCATCGTTTGTTGGTGTTTAG
GTACAAAGAAAATAAATCGATAAGATGTCAAGAAAGTGTTGTCCCTGCTG
TTCAGTCCTTATTGCATCAATTTGCCTGGCAGTTGTTGGAATCTTGATAG
CGTGTCTGAATTTTGGTGCTATGCCATTATATAAAGGTATTGTAAAGAAG
GTATGATTATTTTTATTTATATTTTGTATCCAAACTTTTTCCTGATTATG
AATTGATGGTAGTTGTCTTTAAATCAACCTTGATTTTTCTTGGAAACTTA
TTAATTTCAACTTCTAATTGAATTTCTATTNATTATTTTTATTTATATTT
TGTATCCAAACTTCTTCCTGATTATGAATTGATGGTAGTTGTCTTTTAAT
CAACCTTGATTTTTCTTGGAAACTTATTAATTTCAACCTCTAATTGAATT
TCTATCACAGAAATTGGTGATGAAAAAAGGTTCAATGACCTACAAAAATT
GGGAACATGCACCACTACCAGTGTACATGAATTATTACATCTTTAATTAC
ACAAATTTGGAGGAGATTAAGAATGGAAGCAAACCAATTATTAAAGAGCT
GGGACCTTATGCATACAGGTGGGAATCTATTTTATGCACAAGTNATGATC
TTCAAAGAATTGTTAAATGGAGAGGTTCTGAGTAAGTTTTCAATTTTTTA
TTTCTCATGCCCTTATCTTATTTCCCATCATCCTTTTCTTCATCCCTTTT
GTATCCTACAAATTTTTAAATTGTTTAAAAACTTTCAAGATTCTTTTTTT
TTTGAAATACTCTTAAAACTGATAGCGCAATCAAAATATAACAATTAAAA
CGAATTTGGAAATGATTCAAAAGTAAAAATATGAAAATAATAAAACTGTT
AGAAGTGCTGTTCGCACGTATGTCAAAAGCAGAAAGAAGAGAACTTTGAC
TGATTACAGGGAAGTGAAATATTATGATCTACGTAACCAAATGACTTTAA
ACATCATATGTAGATCTGTTGTTTTCACGCTAAATGAATTGAAATATGGT
ATCAAATAATTCCTTACCTGTATGGTTTGAGGGAATTAATCAATTTCAAT
AACCTTTAAAAATTGGGGTTTGAATACTAATAGTGTAACAACAATAAACA
CACATACAATTTATGCAAATAATCATTATTGAAATATATGATGTCATTCT
GTTACAGTGAAGTGCCTCATTGGTTGACAAAATATGGTCGAATGATCAAT
GGTACAGGTAATGAAAATGATATTTGTTTTTAGAAAAACTGTTTCAATTT
TGCTAAAAGGCTCTTATTAAAATTGTCAGTGATATTACTAGGAAATGGTA
AACTCCAGAAATTTAAACATTTCCTAAATCGCCCTCTAGGAATATTACCC
CTTGGAGAATTAGTCTCTTTAGAAGGCGTTTTGATATTACTTTACTCATT
TTTAATTTTTTTTTACTATCTATCATTCTATTGTATTGTCAGATGGAACA
CACTTCAAACCTTTTGTTACCAAGTCAGATCAACTTTATGCATTCATCCC
TGATATATGCAGGTACAACCTTATTTTGACCACAATTCAGATGTGTAATT
TGAATTGAAAAACTAGGAATATTTTGAAGATGTAGTGCTTGGGACCATTA
TCAACTGTGTCTAGGTATGAATGTGACAAGAACAAAAATGTTTCTCCTCT
TCACTTTCACCATGCAAGTAAAAAGCTATTTATTTGGCATTTTTTTAGGT
CTATTTACATCGTGTACGACCAAGAAGATTCAGTACAAAATATCGATCTC
TACCGATATACAACAGATGAATATTCCATGTTGAACCATACTGCTAACCC
TGACAATGAAGCATTTTGTGTTGGTGGTTGTGGACCATCAGGAATCATTC
CAATCGGACAGTGCCAAGACGGAGGTATAATGAAAATTTGAACACTCTTC
TATCATCTTTGTTTGTGTCTATTATTATTATAGGGCAAACGAATTTTTTA
CCTTCAAAACGATGGAGATCCACTTTCCTCATTTACTTTTTTTATGTTTC
CAGACCCACCAGTTTATGCATCTGGTGTTCACTTTTATCAATCTGATCCC
GCCTTGTTTGAAGCTGTTGATGGCTTGAGCAATCCTGACAAAGAAAAACA
CGCCACTTTGATCAGCGTTGAACCTGTAAGACTTTTATTACAAGTTACGC
AGATCTAGAAAACTCCCTAAAACTTAGTAAGACTTTTTATTCTCACTCAC
AGGATTTTTCTCTCTGCAAGACCTTTTTTGGCAAGGTGAATTGGTATAGA
AATGCCAATTTCAAATCGATTGTTTTTATAGTTGATGATAAACTCNTTTT
TTGGCAAGGTGAATTGGTATAGAAATGCCAATTTCAAATCGATTGGTTTT
ATAGTTGATGATAAACTCAATATTTATATCTAACCCATCAGGATACTGGT
ACCACAATGAAAGCAAACAAGCGATTGCAAATCAATGTCAAAGCTGAATA
CGTTGAATTCTTCCCGTGAGTTTGTTTTGATACCAACTTTCCTATCTTCA
TAGAAAAATCCAAAACATCTATCACTGAACTCACATATTATTTTCTTTTG
TTTTCAGAAAAACTTATGGGTTCCCAAAAGGTGATGGTATCTACTTTCCA
GTGTTTTATGTTGATGAAGTAAGTCAATCTTGTAATTTAATGTTTAATTC
AATTTTTTTGGCCATGAGTTTAAACAACAAAGAAATAATTATTTTAACTA
TTTTCGCTTGAAAACTTAGGAGTTCAAATTAGATGAGGCGAATGCGAAGA
CGTTTGAAGATGAAGTGACAAACCCTAAGAAGTACATTGTGGTTTTCCGA
TGGGTGTTGGTTGGTCTTGGTGGATTCCTCATCTTGCTCGGTGTTACAAT
GTATGTGTGTCATGCCGTTCGCAATAACGACGCCGAAGACGGATATAAGA
AGGTCAGTGTGTGATTCTCTCCATTACAGATTCGATTGAACTTTCTAATA
AAGTCTCTTTTTTATTAAGTTTTTCTAAAACAACTTCTGTTACTTAATTT
GAAGTCACAAATATATTGGAAGATAGATTTCTTGGATATGTGCTCTTGAT
AAATTTCTTCAATAATTTCGTTCCTTGTTTTAGTTTTCTGGTCGTTGAGG
ATGCATTGTTCAAATGGATGATTTTTCTTCTTCAAACAGCTCTGAATTCG
AGCAATTTGGCCAATCTTTCGGTGGAGATCAATTACTCCACAATGAATTA
TAGTTAGGGCAGATTAGGGGTATGATTGTATTACAAATCTCATGTTTATC
TTAAGAATTTTAGAAAAATGTAGGAGTTATTGTATGATTANTTATAGGGC
AAACGAATTTTTTACCTTCAAAACGATGGAGATCCACTTTCCTCATTTAC
TTTTTTTATGTTTCCAGACCCACCAGTTTATGCATCTGGTGTTCACTTTT
ATCAATCTGATCCCGCCTTGTTTGAAGCTGTTGATGGCTTGAGCAATCCT
GACAAAGAAAAACACGCCACTTTGATCAGCGTTGAACCTGTAAGACTTTT
ATTAGAAGTTACGCAGATCTAGAAAACTCCCTAAAACTTAGTAAGACTTT
TTATTCTCACTCACAGGATTTTTCTCTCTGCAAGACCTTTTTTGGCAAGG
TGAATTGGTATAGAAATGCCAATTTCAAATCGATTGGTTTTATAGTTGAT
GATAAACTCAATATTTATATCTAACCCATCAGGATACTGGTACCACAATG
AAAGCAAACAAGCGATTGCAAATCAATGTCAAAGCTGAATACGTTGAATT
CTTCCCGTGAGTTTGCTTTGATACCAACTTTCCTATCTTCATAGAAAAAT
CCAAAACATCTATCACTGAACTCACATATTATTTTCTTTTGTTTTCAGAA
AAACTTATGGGTTCCCAAAAGGTGATGGTATCTACTTTCCAGTGTTTTAT
GTTGATGAAGTAAGTCAATCTTGTAATTTAATGTTTAATTCCATTTTTTT
GGCCATGAGTTTAAACAACAAAGAAATAATTATTTTAACTATTTTCGCTT
GAAAATTTAGGAGTTCAAATTAGATGAGGCGAATGCGAAGACGTTTGAAG
ATGAAGTGACAAACCCTAAGAAGTACATTGTGGTTTTCCGATGGGTGTTG
GTTGGTCTTGGTGGATTCCTCATCTTGCTCGGTGTTACAATGTATGTGTG
TCATGCCGTTCGCAATAACGACGCCGAAGACGGATATAAGAAGGTCAGTG
TGTGATTCTCTCCATTACAGATTCGATTGAACTTTCTAATAAAGTCTCTT
TTTTATTAAGTTTTTCTAAAACAACTTCTGTTACTTAATTTGAAGTCACA
AATATATTGGAAGATAGATTTCTTGGATATGTGCTCTTGATAAATTTCTT
CAATAATTTCGTTCCTTGTTTTAGTTTTCTGGTCGTTGAGGATGCATTGT
TCAAATGGATGATTTTTCTTCTTCAAACAGCTCTGAATTCGAGCAATTTG
GCCAATCTTTCGGTGGAGATCAATTACTCCACAATGAATTATAGTTAGGG
CAGATTAGGGGTATGATTGTATTACAAATCTCATGTTTATCTTAAGAATT
TTAGAAAAATGTAGGAGTTATTGTATGATTATTGTTGATATTTGATAGAG
TATTTTTCTTATATATTTTGTATTTTCGAGTTGATGGAAGTTGTGCTCGA
TGGCATAAACTTTGGATGCTCTTTATTGTTACTGGTTAACTTTTCAAGAG
CTGGCAAAGGGAAAGGCTTGCCTTTTCATAAATATGAGAGATCCCTACTG
CATAATGCATTAAAACATTTTTTGACACTCTTCTGTGTTGAAATTACACG
CAAGTGTTTGTTTTACATTTCCCTACATGGACGATTTTCTTAAGGCGTTT
CAAATTACATTTTTTATAAGCATTTGTTAAGAATATTTATGGATAATTCT
TGTTTGATTTGATTGTATTGAAAATCAATTAGACATTGGCCCTCAGTAAC
CTTGTAATCTGCCCTTTATATATGGCATTGATTAAGCTTTACTAAATTTT
GGTCGAGGTACATGACCTCTCCCAGTTGAACTTTATCCTTACATTCTCTT
AAACTTAGTACCACTTAAGCAAGTCTTACATACATCATATCAATTTCACG
ATTCTGTCTAAGAAACAATTACAATCATTAGTCCAATTTTCTAGGATTTC
GAAATTCAATGTGTTGATTTCATAGGATTCTTTGTTAAAAATTTTTATAC
CAAAGTCTTGATATTCAAGAAAGAGATTTGTATGGATTTTCTAGATAATT
TTTAAAAACATTTATTTTTCAGGATTCTTTTTAAAATTGAATTAATATAA
TAGAAGCTAAGGTATAGATTACTCTTTATTACATAGAGTCGTCTTGTGAT
GGATTAAAGTTGCTTATAGTTTTTCGAAAGAGATCGGTTCAGATATTTGG
AACTTCTGTATAGTTGATTTTAGTTTTTATCGCAATCTTTGTTCAATATC
ATTAATAAATACAGTGTTTATATTTCTAGAATAAAAAAAGAAAAAAACCA
AACAAAAAAAAAACAAATACGTTATGGGTGAAGAAAAAGGTGGTCGTTGC
TGTCGATGCTGCACGACTGTTGTCACAATTTCCATTCTCATTGTTGTCAG
TGTTCTTTTCATCTGTTTGGGAGCTGGATCCATCCCTTTTCTCACCAACT
TTTATAAAGATACAGTACTAAAGGTATACAGTCTTCTCTTTGCATTTAAT
CAATCTGCAATCATCATTCTTGCCCAACCAATGCAAGATGTTCAGTACCT
GTCAAATCCGTACGTCACCAGCTGTTCGCAGTGTCCATTTAGTGTTTTTT
GTTAAATCTGGGACTTTATTTTGCTAAAAAAACAACATAACTCTACCAAA
TATTTAGCTTATCATGATTCGTGACCAGTGTTTCCACTATTTTTTCAGCA
ATTGGTGATGAAATATTCGGATTCTTCTGGAGGGAACGAAGCTTACAAGA
ATTGGAATTCTCCTCCAGCACCTGTCTACATGCAGTTTTATATGTTTAAT
TACACGAATGTTGACGAAATCATCAATGAAAAAGCTAAACCCAATGTCAC
TCAACTCGGCCCATACTCCTACAGGTAGTTTTGACACGTTTTTCGTTCGT
TCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTACCAGCTTTTCTC
GAGATTGGCTCATTAGTTTTTTCTGATTTTTTTGCAGAAAGATGTGTATT
AGCAATGTTCAAAAGATGGCTGAGTCTGATCTTTGAGAAAAAAAATTTTC
CGGCCGAAAATGCCAGAAGTATGCCGGAAATCGCCGTTTTTACAGATTCC
TAACATTTCTTTGTTTTTTAACACAAAAACATAATTGATAACAGTGCCCA
CCATCAAGCATGATTCATTTTCTGCATCCGGAACTTTCTATTTCTTTTTT
CCCTTCTCCCCTTCTCCCCTTCCCTCTCCCCCCATCAACAATCAATGATA
ACATTTAAGGCGTTATGCATTTTCACTAAACACTATATTTTTTGACTGAT
TGTTTTCATTTTTTTCCTTATTGCTATCTAACTTTGATCATCAGGTAGGT
CCATTCAGCATCTAGCTTGTTCTATTTCATTCAAGATTCATGGAATTCTT
AAGATATGACAGACTTTTATCTTCGGTTTGGATTTTTTTTCGTTATAGAG
AGGTCCGAGAGAATGTGATTCTTCACCAAAACGAAAATGAAATCACATAC
TTACAAAATTATTCATACGTTTTCGACCCTGCTACTTCATGTGCTAACTG
CTCAGAAAATGATACGATCATCACTCCGAACCTTGCTGTCATCGTAAGAT
TCGTCTTCATCTACGTCCCGTTTTCATTGAGCTCTGAGAACGCCCTAGGC
TGCACCCATCCCCTCTTATATGTTTTGATATAGGGGAAGCATATCATGTA
TAAAATCTCCGCCCGAGTCACCCCCGTCTTTGTGTTTTTGAGTTTTAGAA
ACTTTGTTAGCTTGATTATAGTATTGAATTTGAATTGAAAATTTGAATTG
CTCTAGGTTAATACAATCATTGGATTTCTGAACCTTGTTAAGAAAATTGA
AACAGGTTACTCATGGACAGGAATTTGATACACGATTAGCATCCCCTATA
TCAAAACATATCAGAGGGGATGCTAGCAGCCTAAGAACGCTCATGATATA
ACCTGTTGTAATAAGATCGCTGATTTCAAATCGCAAAGTGGACGATTGGT
ATTGTTAGGTTATTTCAAATTTTTCTTATCTGCATGTGGATATATCAGAA
GTTGTTAAACTGCCAGCCTTCAATAAAGTACCCTGGTATGCTTTATCGAT
GGATAGTTTTTTTATGATCTATCTTTTTTTCAGACATTTCAAACAAAATT
GAAGGATTTGAACATCACACCACAATCAGGATTTGTCAAGAGATGGGCCA
TTGAAGCTTTAGATAAACTGTTGAATAATGACAAAACGTACAAAATGTTC
ATACCTTTGCCAGTGCATGAACTGTTATGGGGATACACCAGTCCGTTCCT
CGATCATCTGGAAGGTCTCATACCAAAAGTCATACGGAACCTCATTCCGA
ACCTACCCCCGCCTTTTATAGCTTTACAGGTAATTCTTTCATGTATTTGC
TTACCCGGTGAACATTTTGATCCCAACATCTCTCTTTACATATACAACTG
GTAATACAGTCGGCTTTCGCTTATTCGAACTAGAAAGGGGAATCTTATTA
TAAAAATTATTCTAAGAGGGTTTCTCTTGGAGGGGGCCGAAAGCAAATTT
GAACGTTTGAACTACAGAAATATTCGAATAATAGAACTTCGAATAAGCGA
GAGTTTACTGTAGTTTAATATGTTTCTTCCATCTACCAGCAAAACGGTAC
AGCAGGTGCAGTGGCGGTTGGAAATATCACCATTCTTACGGGCAATGAAG
ATATCAATAAAGTTCAAATAACAACTAAATGGAGGGGGAAAAAGTAAGAT
TTTCTTGATCTCTTATCTTCTTCTCATTCTGTACTAAACGTAGACTACAA
TCTGCTACACTAATCTACAACTACTTGATTGGATTGGGCTTCCCATATAA
AAGCAAACGTGCTTGTTTTAGAGCTGACTAGTCCACTATTTTGTATTCCA
TTCTGGTCGCCAATATAATTCGGATGTTTTGAAATTCTAACGTTCGACAA
TCTAAGGTAAATTAGAAAACAAGATGGCAGAATAGTCGACTTCAAACCAA
TTTCAAACAAACTTCTACGGGAAATCTCTGAGCAGTTAGCTTAACTACAA
AGGAATATGATAGTAGTGACGTAATCGCTTCGACTATCTAAACTTAAAAA
ACACCAAAATAAATTTCAACTATTCTCTCTCAGTTCCACAGGTTCTTGGA
ATGGAGACAAGTTTACAAATTTTTGGCAAACACCTTATGGCAATATGATC
AATGGAACAGGTCAGCACTACTAGACGGTTCCCATCTTCCTTTTTTAAAG
CACACCTCGAAAGTAGATATTCAGACAAAATTCTTCTTCCTAAAATTTCT
TTTCTTCAGCTTTTCAAACAAATGAAAAAAAAATCCTCTTCCTTTACAGA
TGGATCCCACTTTCAACCTTACATCTCGAAAGATGACGTCATTTACATTT
TCAATCCTCAGTTATGCAGGTTAATAAGAATATTTTTAAAGAATAGTTTG
TGTCACAGATGGTTCAAGATCTGTGCTCCGTATATCACTAGCTTTATTTT
CCTCACCCAGCCTCACAAACTGCGGGTGGGGTAGTATAGGTTGGCTTGTC
ACCCACTGTCTGAACTCGTTTCTAAGAGATACCCTGAACAATGACTAAAT
TGAAAGCATACACTCCGACAGTTCAAAATTTTCCAAATACTCGTCCGATT
AACAATTTGTATCCAACTGTAATGAAGCTAAATGAAGCTGTAAGTAAGAG
TTGTACCCAAAGAGAAATTATTGATTTAACATGGCTCCGAATGGGGTTCT
AGGTCCCCCCAACAAATTTAGGTCCCCCACTTTTCAGTAAGGTTCAAGTC
CCAGTTGAAATCTAAAGGTTCAGGTCCCTGCAAAAAGTACTTTCAAGGTT
CAGGTTCCAGCAAAGAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTTAAAAAACA
CCAAAATAAATTTCAACTATTCTCTCTCAGTTCCACAGGTTCTTGGAATG
GAGACGAGTTTACAAATTTTTGGCAAACACCTTATGGCAATATGATCAAT
GGAACAGGTCAGCACTACAAATGGAACTTTCAACTTTTTTAGCCATCCTT
TTGACTCGAGAACTATTCCCTCTCATCCTTTCTAGACGGCTTTTCAAAGC
AAATGAAAACAAAAATCCTCTTCCTTTACAGATGGATCCCACTTTCAACC
TTACATCTCGAAAGATGACGTCATTTACATTTTCAATCCTCAGTTATGCA
GGTTAATATGAATATTTTTAAAGAATAGTTTGTGTCACAGATGGTTCAAG
ATCTGTGCTCCGTATATCGCTAGCTTTATTTTCCTCACCCAGCCTCACAA
ACTGCGGGTGGGGTAGTATAGGTTGGCTTGTCACCCTCTGTCTGAACTCG
TTTCTAGGAGATGTACTGAACACTCCGACAGTTCAAAATTTTCCAAATAC
TCGTCCGATTACCAATTTGTATCCAACTGTAATGAAGCTAAATGAAGCTG
TAAGTAAGAGTTGTACCCAAAGAGAAATTATTGATTTTAAAAACCATTAT
GAAATTGTTACTTTGTCACATAGGTCGTTGTATTTGAATTATCAGAGAGA
TACAAGCATTATGGACATCAAATTATTACGCTACACAACGAGGGCGAAAA
TCTTCCAAAATTACACTGCCAACCCAGACAACAAAGCTTTCTGTGGTCCG
AAACGTTGTTATCCAAGTGGCCTGTTACCAGTGGGACAGTGCCAGCCTGG
CAGTAAGATTTGTATTGTTAATTGGATAGTTTCATATCAGTTTTCAACGA
GCCACTTGTTTTTTAAGGGGATAATTCTTCTTTTACGGATGGATTCTTTT
AAATGCAACGTCTTTTGGTCTCAGCCAAGGCATCAAATTGCTTGATCAAG
TTTTCTGGGTTTGCCATCTAAAACTTTCATATTCATTTCTTTCAGATCCT
CCAGTCTTTATGTCATCGCCACATTTCTACCAAGGATACCCAGCATTGTG
GCAATCTTTCAACGGGCTACATCCTGAGACAGATTTGCACGAAACGTATT
TAAGTATTGAACCGGTAAGAAGAGTCCATTTTTCGACCAATAAACCACCA
CTCGCGTAGAATTTCAGCCCCCCCACCCAACCTTTACTTTGTGAAATTAG
GACACTCACAGTTCCTGGTTAAAACGAAAATTTCTTGATGAAAAACTTGA
TGGTTCATACATTACAATCCGTTATTACCTTACATGATTTCGTTTTTTAA
GAAAATATATAAACTTTTAAAGATTAGAAAGAATCACAATTTTTGCCCTG
TTCTGTTTTTTAAATTGCCAATACACCTAAAGATAGACCTTTCACCAGCT
TTCACGATAAATAAGGAACCCATCTATGTTCTTCTGTTTCTAGACAACTG
GGATCGTCATGGATGCACACAAACGTCTTCAAATCAACGTCAATATTCAA
AAAGTCCCTTATATTTCGTAAGTTAAAAGTTACGTAGCTGAATAATCTTC
TGTCTAAAGGGCTGGAAGTAAAGAAGTAAATAAAGTAATCGAATTTAGTG
ATCCGCTTCCTTTACGATCATGATGGAAAAAATTTATCATAATTCAGATT
CCATATTGTCTTTCAGGAGAACAGATGTATTTCCAGAGCAAGATAATTTC
TATCCTGTTTTGTTTGTGCATGAGGTAAGTAAACAAATAATTCCTGGTCG
TAGCAAACTTTGAATGGTGAATTTAACTCTGCCAAATCTCGTTTTGGTGA
AGAGTGACTGTAAAGTATATTCATTTCTATTATTGAAAACAATGAAATTT
AGGGAAGCTCTAAATTGACGATGTCTTTAACTAGGGTTTAAAAAAAGCCA
GTAACTAACTTATTTTGGACAAGTGCTCGTTATAATGTTATGACATTGAT
GATTTCAATCATTATTACTTACTCAGTATGCCACCATTGACAAAGCATCA
GCAGATAGGTTCAAGAAAGAAGTAATGTTACCAAAGCAGATGATCACTAT
AATGGAATATGGTTTGATCGGCCTGGGTGGCCTCTTTCTCATCATTGCTC
TTGTATTGGGTGCAAGACATCAAAGAAAAAAGAATCAACAATCCGTCTAT
ACAGAAGTAAGTTTTTGACTCCTTTTTACATCAGGAGTGCTCATCTCCTT
AATAGAGCATTGTAGGGATGACATCTTGGAACATTGTCTTCCATCATTGG
AAGCGTCGTGTTTCTTCACTCCTTTGAAGCCGTTACACTTACCACAATAT
CTATTTAGTTACAAAGAATCCTACTTATGCGCTCTACTATAATTGATATG
GTTTGATTCTTGAATTGAATGCCAGCTTCCATTCATTACTCTTTTATCGT
CAGTGGTTTAATAAGGACTAATTTTCTTCTTTACCTGGACTCTACGCTTT
TTCTTCACTCCAGTAATATTCTTTATATTATTTGATTTCAGTTTTCGAAT
GAGGACAATGAAAAGAACATACAACAGGTAACCTACCCTATTTGAACTTA
GTTTTATCCTATTTTACATTGTTTTTATTATTCTTACTCTGTGTTAGTCA
TTTTATACCTTTTACACGAATTACGATGTACGACTGTGTACGACGAACCC
ATTTTAAACTTACTGCAGTACGTGCTGCCTAAATAAAGACGCCTCTTCCA
CCGTTTATTTTTTTAGAAAAAAGGACATTGACGAACAACCAAATGAGACT
GCTAGGCTGATAATGACTTAATTAAAATACTAATGACTACTAAGTTTTAA
ATGACAGGGACAGATAGTTTTTTCTAACCTAGCGGTTTTTCTACGTCGTA
ACATTTTAGTCATCTTTGAAAAAAAGTTCTTTTTTTGCTCTTTTTTAATG
GTAATGTGAGTTATTACCGGCATATTTAAGAAAGTAAAATTTCTCAAAAA
AGTAATTGTTTTAACTGACATTTAATTATTTTACAATTGATTTAACACAC
GAAAATTTTATTTAGAAGTATTTTGTATCTTGTAAATAGCATTTTGAAGT
ATAATTTAGACAATGATTTCTGGAAATATATTTCTTTTCAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039392	XLOC_039392	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_373	supercontig	scaffold_373:64516..77156 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.19374	5.31214	0.999297	0.565579	5.642	3.33087	2.68236	3.29875	1.40813	2.80899	2.54154	2.75714	1.74283	4.73889	3.51343	5.70039	5.62958	4.08127	2.38908	2.33258	2.4995	3.381	3.49582	2.64076	0.254951	0.687296	2.8464	3.59977	9.45429	8.80604

Blast

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BLAST of TCONS_00062889 vs. Swiss-Prot (Human)
Match: SCRB2 (Lysosome membrane protein 2 OS=Homo sapiens GN=SCARB2 PE=1 SV=2)

HSP 1 Score: 231.876 bits (590), Expect = 4.008e-65
Identity = 151/441 (34.24%), Postives = 224/441 (50.79%), Query Frame = 2

Query: 2795 TVLKQLVMKYSDSSGGNEAYKNWNSPPAPVYMQFYMFNYTNVDEIINEKAKPNVTQLGPYSYREVR--ENVILHQNENEITYLQNYSYVFDPATSCANCSENDTIITPNLAVITFQTKLKDLNITPQSGFVKRWAIEALDKLLNNDKTYKMFIPLPVHELLWGYTSPFLDHLEGLIPKVIRNLIPNLPPPF-IALQQNGTAGAVAVGNITILTGNEDINKVQITTKWRGKNSTGSWNGDKFTNFWQTPYGNMINGTDGSHFQPYISKDDVIYIFNPQLCRSLYLNYQRDTSIMDIKLLRYTTRAKIFQNYTANPDNKAFCGPK-RCYPSGLLPVGQCQPGNPPVFMSSPHFYQGYPALWQSFNGLHPETDLHETYLSIEPTTGIVMDAHKRLQINVNIQKV-PYISRTDVFPEQDNFYPVLFVHEYATIDKASADRFKKEV 4102
            ++ K++V++      G EA+ +W  PP PVY QFY FN TN +EI+  +  P V ++GPY+YRE+R   N+    N   I+ + N +YVF+   S  +  + D I T N+ V+T         I        R  IEA+ K        K+F+   V ELLWGY    L         +I    P++ P F +  ++NGT      G+   LTG +         +W GK S   W  DK          NMINGTDG  F P I+KD+V+Y+F    CRS+Y+ +    S+  +   RY   A+I  N +   DN  FC P+  C  SG+L V  C+ G  P+ MS PHFYQ       +  G+HP  + HET++ I P TGI++ A KR QIN+ ++K+  ++   D+   +   +PV++++E   IDK +A R K  +
Sbjct:   36 SIEKKIVLR-----NGTEAFDSWEKPPLPVYTQFYFFNVTNPEEILRGET-PRVEEVGPYTYRELRNKANIQFGDNGTTISAVSNKAYVFERDQSVGD-PKIDLIRTLNIPVLTV--------IEWSQVHFLREIIEAMLKAYQQ----KLFVTHTVDELLWGYKDEIL--------SLIHVFRPDISPYFGLFYEKNGTND----GDYVFLTGEDSYLNFTKIVEWNGKTSLDWWITDK---------CNMINGTDGDSFHPLITKDEVLYVFPSDFCRSVYITFSDYESVQGLPAFRYKVPAEILANTS---DNAGFCIPEGNCLGSGVLNVSICKNG-APIIMSFPHFYQADERFVSAIEGMHPNQEDHETFVDINPLTGIILKAAKRFQINIYVKKLDDFVETGDI---RTMVFPVMYLNESVHIDKETASRLKSMI 429

HSP 2 Score: 124.79 bits (312), Expect = 1.493e-29
Identity = 71/215 (33.02%), Postives = 110/215 (51.16%), Query Frame = 2

Query:  737 DLQRIVKWRGSDEVPHWLTKYGRMINGTDGTHFKPFVTKSDQLYAFIPDICRSIYIVYDQEDSVQNIDLYRYTTDEYSMLNHTANPDNEAFCV-XXXXXXXXXXXXXXXDGDPPVYASGVHFYQSDPALFEAVDGLSNPDKEKHATLISVEPDTGTTMKANKRLQINVKAEYVEFFPKTYGFPKGD--GIYFPVFYVDEEFKLDEANAKTFEDEV 1372
            +  +IV+W G   +  W+T    MINGTDG  F P +TK + LY F  D CRS+YI +   +SVQ +  +RY      + N +   DN  FC+  G      +          P+  S  HFYQ+D     A++G+ +P++E H T + + P TG  +KA KR QIN+  + ++ F +T     GD   + FPV Y++E   +D+  A   +  +
Sbjct:  224 NFTKIVEWNGKTSLDWWITDKCNMINGTDGDSFHPLITKDEVLYVFPSDFCRSVYITFSDYESVQGLPAFRYKVPAEILANTS---DNAGFCIPEGNCLGSGVLNVSICKNGAPIIMSFPHFYQADERFVSAIEGM-HPNQEDHETFVDINPLTGIILKAAKRFQINIYVKKLDDFVET-----GDIRTMVFPVMYLNESVHIDKETASRLKSMI 429

The following BLAST results are available for this feature:

BLAST of TCONS_00062889 vs. Swiss-Prot (Human)

BLAST of TCONS_00062889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SCRB2	4.008e-65	34.24	Lysosome membrane protein 2 OS=Homo sapiens GN=SCA...	[more]

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TCONS_00062889 (transcript) - C. hemisphaerica