TCONS_00062886 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062886
Unique NameTCONS_00062886
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1048

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062886 ID=TCONS_00062886|Name=TCONS_00062886|organism=Clytia hemisphaerica|type=transcript|length=1048bp
ctGATAGATTGAGTTCTGAAAGTATCTATTAAATACTAAGATCACCTTTT
CTGGTGGAACCTCTCTTGCTAGAAGCTCTCTAACAATCCACATCAAATCA
TCCACAGAGCCTGAAACAGGTTTGGTCTTTATGTACCATTCGTCATCCTC
TGGATCTTGTAAATAAGGTAGCATCACATACATAGATTCTAAATGTTCTC
CTAGCTTGAAAACTTCATACATTTCATCAAGTTCTTTTATATCAGGGTAA
ATTGAGGAGGAGATTGTTAATTTGTGATCAGTTTCTAGGTTTTGTACCAT
GAGTTCTCTCCTGAATTCTTCGCAAAGAAGAGTGAATCGCTTACGATCAT
CTTTATCGGAGTTACCACGTTTGGTAGGATATCTCCAATCGAAATGCAAT
CCATCAAAGTCGTGTTGTTGGAGATAAGTAATGGAATTTCGAATAaattg
ttgtctattttctttcGAGGCAACTACCTTAGAGAAAGGACTTGNCCATC
AAAGTCGTGTTGTTGGAGATAAGTAATGGAATTTCGAATAaattgttgtc
tattttctttcGAGGCAACCACCTTAGAGAAAGGACTTGTGCTACCAAAC
TCATGCAACCAACCACCAACTGCAAGCAAAACTTTCAGTGAAGGATTTTG
GATTTTCAGTCCGATAATTTCTTTGTATTGATGTTCGTCATTCTCATCGG
TCGGTTGAAGCTCAAAACCATCACCAATCTGTGCGAACGCGTACACAACA
TGTGTGCAAAGGAATGGATCGATGTTGTCTACGGTGAACTTGCCGACTCC
TGTACGATACTGTGACCAGTTGGTATAAAAACAAATTCTGCTGTACTCCT
TCGACGATGCCTTGAATAAGATAGTGAAGCTAAGAAGTATCTTCAAGACA
TACAAATTCATCTTGAGATTAAAGTTTGATCAACTAAAATTTGACGAAGG
AGCGAAACATTTCCTTAGCAGACGAAAGATTCCCTTCATAcaagtgaaat
aatttttcaagcTTTGGCAACATTTTTTGTCTCATGAATCTTGGTATA
Run BLAST on NCBI

transcript from alignment at scaffold_373:41049..42162-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062886 ID=TCONS_00062886|Name=TCONS_00062886|organism=Clytia hemisphaerica|type=transcript|length=1114bp|location=Sequence derived from alignment at scaffold_373:41049..42162- (Clytia hemisphaerica)
CTGATAGATTGAGTTCTGAAAGTATCTATTAAATACTAAGATCACCTTTT
CTGGTGGAACCTCTCTTGCTAGAAGCTCTCTAACAATCCACATCAAATCA
TCCACAGAGCCTGAAACAGGTTTGGTCTTTATGTACCATTCGTCATCCTC
TGGATCTTGTAAATAAGGTAGCATCACATACATAGATTCTAAATGTTCTC
CTAGCTTGAAAACTTCATACATTTCATCAAGTTCTTTTATATCAGGGTAA
ATTGAGGAGGAGATTGTTAATTTGTGATCAGTTTCTAGGTTTTGTACCAT
GAGCNTATCAGGGTAAATTGAGGAGGAGATTGTTAATTTGTGATCGGTTT
CTAGGTTTTGTACCATGAGTTCTCTCCTGAATTCTTCGCAAAGAAGAGTG
AATCGCTTACGATCATCTTTATCGGAGTTACCACGTTTGGTAGGATATCT
CCAATCGAAATGCAATCCATCAAAGTCGTGTTGTTGGAGATAAGTAATGG
AATTTCGAATAAATTGTTGTCTATTTTCTTTCGAGGCAACTACCTTAGAG
AAAGGACTTGNCCATCAAAGTCGTGTTGTTGGAGATAAGTAATGGAATTT
CGAATAAATTGTTGTCTATTTTCTTTCGAGGCAACCACCTTAGAGAAAGG
ACTTGTGCTACCAAACTCATGCAACCAACCACCAACTGCAAGCAAAACTT
TCAGTGAAGGATTTTGGATTTTCAGTCCGATAATTTCTTTGTATTGATGT
TCGTCATTCTCATCGGTCGGTTGAAGCTCAAAACCATCACCAATCTGTGC
GAACGCGTACACAACATGTGTGCAAAGGAATGGATCGATGTTGTCTACGG
TGAACTTGCCGACTCCTGTACGATACTGTGACCAGTTGGTATAAAAACAA
ATTCTGCTGTACTCCTTCGACGATGCCTTGAATAAGATAGTGAAGCTAAG
AAGTATCTTCAAGACATACAAATTCATCTTGAGATTAAAGTTTGATCAAC
TAAAATTTGACGAAGGAGCGAAACATTTCCTTAGCAGACGAAAGATTCCC
TTCATACAAGTGAAATAATTTTTCAAGCTTTGGCAACATTTTTTGTCTCA
TGAATCTTGGTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039391XLOC_039391Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062886-exon-scaffold_373-1575043694:41875..42162TCONS_00062886-exon-scaffold_373-1575043694:41875..42162Clytia hemisphaericaexon
TCONS_00062886-exon-scaffold_373-1575043694:41049..41808TCONS_00062886-exon-scaffold_373-1575043694:41049..41808Clytia hemisphaericaexon
TCONS_00062886-exon-scaffold_373-1510915933:41875..42162TCONS_00062886-exon-scaffold_373-1510915933:41875..42162Clytia hemisphaericaexon
TCONS_00062886-exon-scaffold_373-1510915933:41049..41808TCONS_00062886-exon-scaffold_373-1510915933:41049..41808Clytia hemisphaericaexon
TCONS_00062886-exon-scaffold_373-1491911889:41875..42162TCONS_00062886-exon-scaffold_373-1491911889:41875..42162Clytia hemisphaericaexon
TCONS_00062886-exon-scaffold_373-1491911889:41049..41808TCONS_00062886-exon-scaffold_373-1491911889:41049..41808Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_373supercontigscaffold_373:41049..42162 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.181657	0.169615	0	0.00531609	0	0.0450617	0	0	0	0	0.127467	0	0	0	0.0161956	0	0.836426	0.483835	0	0	0.870086	0.890865	0	0.848643	0.392495	0	0	0	0	0.11278
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001223Glyco_hydro18_cat
IPR017853Glycoside_hydrolase_SF
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
Blast
[Close]
BLAST of TCONS_00062886 vs. Swiss-Prot (Human)
Match: CHIA (Acidic mammalian chitinase OS=Homo sapiens GN=CHIA PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.028e-29
Identity = 58/117 (49.57%), Postives = 81/117 (69.23%), Query Frame = -3 
Query:  495 YSRICFYTNWSQYRTGVGKFTVDNIDPFLCTHVVYAFAQIGDGFELQPTDENDEHQYKEIIGLKIQNPSLKVLLAVGGWLHEFGSTSPFSKVVASKENRQQFIRNSITYLQQHDFDG 845
            Y   C++TNW+QYR G+G+F  DNIDP LCTH++YAFA   +  E+   + ND   Y+   GLK +N  LK LLA+GGW   FG T+PF+ +V++ ENRQ FI + I +L+Q++FDG
Sbjct:   22 YQLTCYFTNWAQYRPGLGRFMPDNIDPCLCTHLIYAFAGRQNN-EITTIEWNDVTLYQAFNGLKNKNSQLKTLLAIGGW--NFG-TAPFTAMVSTPENRQTFITSVIKFLRQYEFDG 134

HSP 2 Score: 81.6481 bits (200), Expect = 5.538e-17
Identity = 51/170 (30.00%), Postives = 90/170 (52.94%), Query Frame = -2 
Query:    7 SPFSKVVASKENRQQFIRNSITYLQQHDFDGLHFDWRYPTKRGNSDKDDRKRFTLLCEEFRRELMVQNLETDH-KLTISSSIYPDIKELDEMYEVFKLGEHLESMYVMLPYLQDP------EDDEWY-IKTKPVSGSVDDLMWIVRELLAREVPPEKVILVFNRYFQNSI 492
            +PF+ +V++ ENRQ FI + I +L+Q++FDGL FDW YP  RG S   D+  FT+L +E R     +  + +  +L +++++   I  +   YE+ +L ++L+ ++VM   L         E+   Y   T   S +  ++ +++        P EK+I+ F  Y  N I
Sbjct:  104 APFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWEYPGSRG-SPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPAEKLIVGFPTYGHNFI 272
The following BLAST results are available for this feature:
BLAST of TCONS_00062886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHIA2.028e-2949.57Acidic mammalian chitinase OS=Homo sapiens GN=CHIA... [more]
back to top