TCONS_00062880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062880
Unique NameTCONS_00062880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062880 ID=TCONS_00062880|Name=TCONS_00062880|organism=Clytia hemisphaerica|type=transcript|length=1421bp
TTTTGGGTCAGTAATTTCCTTTTCAATATGGCGATGAGCGTGCATTGAGC
TGGTGGTACTCAACTCAAGGCTTTTGAATGGACCTGCTGCCAATTTATTG
GTCATGAATGTGTTTCACTCACTATGCACATTCAGAAGAAGTATTGAAAA
AGGACAACCAAGTCAGACATTGTTTACGAGTAATGGATTTTTAAGCAGTT
TAAGCAAGAATATGACGGTTGAAGTTGTGATCAGCTTTTGTGATGCTACA
AATACAAGAACTAGTGTACCAAAATGTGAAATAGgttAAAAATGTCATAA
GTCGCAAtgttatgaatgaaaaaaattggtgTGACAGTGTACATTGGACA
TTGccATCCTTGTCGGACTTGATTTCTTCACGTACTTGGCAGCGAATAAA
GCAGTTGTCCAAGACATTTTCCGGATGATGATTGGAAGTACACTTCGTGC
ATGTTTTGAGGAAATTAAAGAACCTTTCCTCATCTTCGGCATTCGATGAG
GGCATTGGAATTATGCGGAATTGCTCTGGAGCATGGCAAACAAGTGCGTG
AAAATACTGGCCGAACAATTTTCGCTTCGTCAACTTCTCAGTCGTTTCGA
AAGCCACGATCATTTTCATGGCATGAACAAATGTCACGTTGTACAGCCGC
AAAATCAATTCAGCGGACCTCTCGTTCGAGTAGAGGATTTCCTGTATCTC
GCATAGAGAAATCAGAATCTGGACTATCTTGTCATCAATTCGTCCATCAA
CGGCCGTCGTTAATTGGAGCAATGCATTTCGGTAATCTTTCCCTCTTTTG
ACTTGCCTTGAAGAAAAAGCAGCTTTCAAAGTTCTCTCAAATACGCCCCG
TTCTTTTTTCGGAAGGTGTCTTGGGATTTCCTCGAAAAGATTATTGATAT
GGTGACCTATTGCGTGCAATGGTTCGACTGGAAGCACCTCGTAATCGCAC
ATTCCAACTTCAGCAAAGCGATATTTGCCAGTATTGTGCAACAGAGCTGG
CATTCTGTGTGTTCCCTTCATTTCGTTATCGATCTCTTTCCTCAAATCTT
CAACACGACTTTCGACAGGAACAACAATATCGCGTAAATGGAGTTCAAGT
TGGGCTTCGTGACTTTTCAGGCAGGAACTGTAGTGCAGAGCACCTTCGCT
TTGAAGTTTCCGACCGACCTCAGTCATGTTTAACTTCTCACACTTGTCAT
CGAGCGACATCTTGGTGGCATTGAATGCGTATTGAAGGTCGTGGCAGCGG
AAAGAATTGCACTCGCAACCCCAACAAAAGTAATTTCCTCCTTTTTTGTG
ACCACTCTCCAACTGACAGGCTGGAGCATCTCCTGAATTGTAGCAAAATA
TTCAATaattttgttataaatttttaCATTGATAGTTAATAGTTGAATAT
AACAATTTTTGTGTCGATTTA
Run BLAST on NCBI

transcript from alignment at scaffold_373:206636..213301+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062880 ID=TCONS_00062880|Name=TCONS_00062880|organism=Clytia hemisphaerica|type=transcript|length=6666bp|location=Sequence derived from alignment at scaffold_373:206636..213301+ (Clytia hemisphaerica)
TTTTGGGTCAGTAATTTCCTTTTCAATATGGCGATGAGCGTGCATTGAGC
TGGTGGTACTCAACTCAAGGCTTTTGAATGGACCTGCTGCCAATTTATTG
GTCATGAATGTGTTTCACTCACTATGCACATTCAGAAGAAGTATTGAAAA
AGGTAACTTAATAattctttttaacttttagaGGTTTTCCCACGTTCAAA
CTTGAGAATTATGCACTGTGACTGTTGATTTGATTGAGACCCCCTTGTCC
ATGTGTAATGGCTATCACTACTGTATTGAGCTGAAGGCAAGTTCCTATGT
AGACTAGAGGTATGTCTGCTCCCAGGAGAGCTGCATGTTCCTCAATCCAT
ACTCAATCCCATCAATGGATATACATAATAGATTTAACATGGATGACTAA
TCAAACCGATTAACCAATCGATCGATTCGGATTATTAGTACGTAATTGAT
AACTGTTACCAATGGTAATGGATGACCAATCGATTGATCTCGAATAATCG
ATAGGTTATCGCAGTATCGTACCTATTTATtctaaaatcttgagtatcta
tctttgattgtttttttttcattcctaAGGCAATATAGCCTGCCTTGGAA
TTCTGATTATCGATTGTCTATCGATTATTAAAATTAATCGATATACAATC
AATTGGTCAACATGAATTGGAAAAAGTTACAGATTGTATCGATTGGGAGA
GTCTGGTTTAACACACACTCTCCCATGTAATACACTGATAACTCTTTCCA
TTTGATAATCATGTTTTTTTAAAGGAGGCTCGATTGCTTATCGATTGATC
GAATGATCATAAATTGGCTCTAAcaagcagttagtcacactagcgtcccg
ccaaaatgcatatcaaagattaatgctgcgaaagcgctatatcatttact
tgactctcaagcaaaaaaatgcgccgcaaaacttttaaagggattcatga
aaaaataacccggcgctttttaatgaaattaatattttcaaaaactttga
gaaattgcctaaaatttgagccatagatgaaaaaaattgagccaagccaa
ccttgaaaactaatttgacgatcaacttcccaagaaaaagatctacgggg
gaggcggaacccacctggatccgcgcaccgccgggtAGGCTGTTTCTCGG
AAATTTTTGCCGGACcacaaacaatgacccatttacatgggcggaattat
ttttactttagcgtataaacaaggccttaaaaatcgaagcgctgtctcgg
gaattgaatgacaaaatttggttggttaatatttggctgctgcacgttcg
caatctgtcattttgtctcattttaagttttcaagttttaattgattgtc
ttgggatcttgaacttgattcaggtaactctctcATCCTTGTTATtaaaa
tacatcctgtagatgactgatgttgttttttctgaaagcttgatttccta
gtgtgactaactgacaagataaaaaaaacaatgatcaatCAATATACAGT
ACTCAAGATTTTAGTCTCAATCAACTATCAATTATTGGGATTGGTTATCA
ACTAAATTGAATAGGACCAGACGTTACTActcattgttaaccggttactt
tttcgaagcgggctttttgcgcaatgcaatttgttcttttcgcatgacga
cgggccttcactgtccagagttgcccgtcgttaggaaaattcattgtgac
atcactttttcaaaggaaaattaacaatgcgttgacatcatttctctcat
tttttatttctgacgtcagaaattataacaattttttatctctttttgct
tgtttttcgctatttttcctggatacagcgctaaaaatcaattgaagctg
aaggaaacggttaacaaatagaATAATGACCGGTTTCTTTTCGGGCTGTA
TTGAAAATATTGTCCTCGGTCAACACAACAACCTTGCacagggggggtcg
gtagtaaaatctctaTACGGtaaaatagtttacggtctggacaTCCAGGC
TAGGTTTAAGCTAGAAAGTCTCAGCATAACTTCTTCACATTCTAGACAGT
TCTAGAGACATTTTCCTAATCAGGGTGTCATgcttgaataattaaaaact
ccattCCAACTCCAGCACAGACTGGCAcagattatattttttattgttgt
tgtttcctTTGCATTGCATCCATTGAAATGGGGAGTTATCATGATTTACG
CTGGAGttatttttaatattcaacACAGCACTGTGATTAGGAAAATATCT
TTTCTAGCCAGTTAGTATAATTTACTTATAGgatgaaaacaaattttcat
tgaaagtttcaaaccaagaaagtgaaatttatgcaaaattaaaatttgtg
aTTTCTGCCTATACTTTGTCTGAAATTAAGTGGTCCCCCGCATGTTACTC
TGGTGTAGAAAGCTATTAATCAGGCTCATTTTTATAGCATGGGCTTACAA
TGGAAATTCCATGATATAAGCCCATTCATAGTATTATTTCTGAAATTAAG
TGGTCCCCAGCATGTTTCTCAGGTGTAGAAAGCTAATTAATCAGGCTCAT
TTTTATAGCATGGGCTTATAATGgaaatcccatgatataagcccattata
gtattatttctgaaattaagTGGTCCCCAGCGTGTTTCTCAGGTGTAGAA
AGCTAATTAACCAGGCTCATTTTTATAACATGGGCTTATAATGGATatcc
catgatataagcccattatagtattatttctgaaattaagTGGTCAGTCC
tattgtaaattttcaaaaaaatactaaTCAATGACAAGTTTTATAAGTGA
AGTATATATCTGGAAGTCTATCTTCtgcaaaaattttaattctgtaatga
aaataatttttagaaagtGATAAAATAAATATAGAAATTTTTGTGAATGT
GTCAGTAATATAAATACTAATAATAACAATCATACAAATGTTACACACTG
AACTTATTTGAATAATATTTACAATTTAAATGAAGAGTCAATGTagtaaa
aattcttttaaaaattatatcttaATTGATGTTACGCTATTCATTTTGCT
TATGGAATGAGTGTAAACCTGGACAGGATTCCATAACATTTTTATAATCT
CACAAATTTACTCTCGTTAATCCTAAAAAAGCATTCCtgctttcaaaagt
ttaaacTTAGTTATTTTAACTTCTAATTTGTGTCTGGTGATCTAAGttaa
aataatatcaaattttgatttcaagcacTTGATGATCGACATTGCATTTT
TCTCCCTCACATATTCTTCTTTATCATCTTCGGTATAACGCCATGTGTAC
TCGTTGTCTGTTTTTAATGCCTTCTTTTCTAACAATTTTAGAGCCTCAGT
AGCCTTTTCCCACCTTACAACAAGTTTCACTCCTATCTTAGTAAGGATTT
GATCAAGTTCGCCTCCTGGTCTGTTCTTCATTTTCTCATAGCTATTAGTC
AAGCTTTCTTCTCCTAGCACCTGATTTAGCAGCTCTTTGGTAGAGAAGGA
TTTTTTACGTAAGAGTGCATGTTTCTCTTCACCTAAGGaagaataaaatg
atttttttttcattttacagGACAACCAAGTCAGACATTGTTTACGAGTA
ATGGATTTTTAAGCAGTTTAAGCAAGAATATGACGGTAAGCAAGTTTATC
TTTATATTAACACTTACTTTGGGTCTCATCACTTGGGCAGCGAATTGGGg
ttttttgattgattgattgatctaAATGACACAGTACAATGATTATGCAT
AGTGTTATGGGTTTTTTATTAATTCTAGATAGCAtattaattgaaaataa
atgcttGAATCATTGTTACACTAAGTTATGCGGATTTAGTTGAATAAATG
AATTGCGTGTTGCATTGAAACTTACTCGATAAATTTTGATTAGGTCCTCG
GGTTAAAACAACTTGACTTGCTGATAAACCTGAAAAaatggttttaaaat
ttttttaacactgTGTCATCTAATTCCTCTCAGGTTGAAGTTGTGATCAG
CTTTTGTGATGCTACAAATACAAGAACTAGTGTACCAAAATGTGAAATAG
GTAAAACAAATATTCTTAGTGTTCTACATCAAGCTAGAGAAATCTGGTGA
AACTTACTAGAGTTATCATGGCTTGGTCCTGGTGTTGAGTGGTCTTGTAT
CATTGATACGTCTGAAACTGAAGATTTTTATTGCTGGtaaaatttacaag
aaaaattcattctgttaaatttctttttttaaggttAAAAATGTCATAAG
TCGCAAtgttatgaatgaaaaaaattggtgTGACAGTGTACATTGGACAT
TGGTAAGAAATAATTTTACTGctagaaaatataaaacttgTGAAACTTAC
ATGAACGTTCATGACTTGGTCCAGGGGTTGCCTGGGTATGATACATGGGA
ACATCTGAAATTTGAAGATCTATGGGTGTGTCTAAAACAAAGATACAGAT
TGTTTAATACATTGCTGAAGAGCCAGCAATCGGTAGCATGCAGAGAAATA
TGTTTAACCCTTAAAATCTAATTTATAATGGAGAATTTACCATCAACTTT
AGCAGCTTCAGCCACATTTTTTCCAGTATAGTTTGACTTGATATACTTGG
GAAAtgctaaaaaaaaaatattgcacaATATAAAATCAAGGAAACTgtta
aatcttcattttaagaTTGATGATGCTAAAGGATTGGTACTGTCTATACC
AAAGTAATTATTTGCCTCGGTCtggtatttttgaaacaaaattaacTCAC
AAGATTTTTGCTGGCCCATAGAGTTGCATGGAGTTGAAGATGCAAACGTT
GTCTTGGTTTTACCTAaacagaaatatttttaaaattcttgAATCCTGTC
CAGGTTTACACTGGAGAAGATAAAGTATTTGACCtagttgaattttttta
atctaaAGTGCATTTATAAAAGACCACATTATGTGGCGCTCTGTACCTGA
TTCAGGCGGGCTCTTCAGCTGCATGTTTGCGATCATAGTTGAGGGGGTAA
CGTTGAGATCTACCTTCTTTTGCTTTGTCGAATTTGCTATAAAGAAATTG
GAAGTCTTTCTAACTTTGAAAATTCTGAGAGTAAAGTGCTGATAGGTTTC
TATTAAAATTATCATTCAATTGAAGCAGGCATTTGGAATGTTAGTAAAAC
AAAGTATAAACTTCTGCTGGAACCTTAGTCGAAGAAACTATATAATTTCT
TACCTTTTTCAGcttgttttttgaaatgatttagGGTTACAAGGAAGTTT
GTCTTCTTTCCGTCATCATCAATGATCTCATAGGCAGGAATTTGAGAAGG
AGAGCTTTTGAGGAGATCTGACCACACTTCTTTAACACGGACCAACTCCT
GCTTAATTGTTGTATCTCGAAAATGACTGATAGGGAGATTGAGCTTTTTC
AGGTCGCTAAACTTGATGCCATCGGTCATTTCTGTCCAAATGCCTTTGAC
AACTAAAAAATCAGCTATCCTCTCTAAATGAGCTTGCCATATCCTAGGGA
ACTTTGTGATGAATCGGAAAGGGATTATAGTTTCGGTCTTGGGTGGAAGC
TTCTTGCCAGACTTAGAGATTGATGactctcttttttttcttttacagcc
ATCCTTGTCGGACTTGATTTCTTCACGTACTTGGCAGCGAATAAAGCAGT
TGTCCAAGACATTTTCCGGATGATGATTGGAAGTACACTTCGTGCATGTT
TTGAGGAAATTAAAGAACCTTTCCTCATCTTCGGCATTCGATGAGGGCAT
TGGAATTATGCGGAATTGCTCTGGAGCATGGCAAACAAGTGCGTGAAAAT
ACTGGCCGAACAATTTTCGCTTCGTCAACTTCTCAGTCGTTTCGAAAGCC
ACGATCATTTTCATGGCATGAACAAATGTCACGTTGTACAGCCGCAAAAT
CAATTCAGCGGACCTCTCGTTCGAGTAGAGGATTTCCTGTATCTCGCATA
GAGAAATCAGAATCTGGACTATCTTGTCATCAATTCGTCCATCAACGGCC
GTCGTTAATTGGAGCAATGCATTTCGGTAATCTTTCCCTCTTTTGACTTG
CCTTGAAGAAAAAGCAGCTTTCAAAGTTCTCTCAAATACGCCCCGTTCTT
TTTTCGGAAGGTGTCTTGGGATTTCCTCGAAAAGATTATTGATATGGTGA
CCTATTGCGTGCAATGGTTCGACTGGAAGCACCTCGTAATCGCACATTCC
AACTTCAGCAAAGCGATATTTGCCAGTATTGTGCAACAGAGCTGGCATTC
TGTGTGTTCCCTTCATTTCGTTATCGATCTCTTTCCTCAAATCTTCAACA
CGACTTTCGACAGGAACAACAATATCGCGTAAATGGAGTTCAAGTTGGGC
TTCGTGACTTTTCAGGCAGGAACTGTAGTGCAGAGCACCTTCGCTTTGAA
GTTTCCGACCGACCTCAGTCATGTTTAACTTCTCACACTTGTCATCGAGC
GACATCTTGGTGGCATTGAATGCGTATTGAAGGTCGTGGCAGCGGAAAGA
ATTGCACTCGCAACCCCAACAAAAGTAATTTCCTCCTTTTTTGTGACCAC
TCTCCAACTGACAGGCTGGAGCATCTCCTGAATTGTAGCAAAATATTCAA
TaattttgttataaatttttaCATTGATAGTTAATAGTTGAATATAACAA
TTTTTGTGTCGATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039388XLOC_039388Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062880-exon-scaffold_373-1491911889:206636..206787TCONS_00062880-exon-scaffold_373-1491911889:206636..206787Clytia hemisphaericaexon
TCONS_00062880-exon-scaffold_373-1510915933:206636..206787TCONS_00062880-exon-scaffold_373-1510915933:206636..206787Clytia hemisphaericaexon
TCONS_00062880-exon-scaffold_373-1575043694:206636..206787TCONS_00062880-exon-scaffold_373-1575043694:206636..206787Clytia hemisphaericaexon
TCONS_00062880-exon-scaffold_373-1491911889:210206..210270TCONS_00062880-exon-scaffold_373-1491911889:210206..210270Clytia hemisphaericaexon
TCONS_00062880-exon-scaffold_373-1510915933:210206..210270TCONS_00062880-exon-scaffold_373-1510915933:210206..210270Clytia hemisphaericaexon
TCONS_00062880-exon-scaffold_373-1575043694:210206..210270TCONS_00062880-exon-scaffold_373-1575043694:210206..210270Clytia hemisphaericaexon
TCONS_00062880-exon-scaffold_373-1491911889:210619..210685TCONS_00062880-exon-scaffold_373-1491911889:210619..210685Clytia hemisphaericaexon
TCONS_00062880-exon-scaffold_373-1510915933:210619..210685TCONS_00062880-exon-scaffold_373-1510915933:210619..210685Clytia hemisphaericaexon
TCONS_00062880-exon-scaffold_373-1575043694:210619..210685TCONS_00062880-exon-scaffold_373-1575043694:210619..210685Clytia hemisphaericaexon
TCONS_00062880-exon-scaffold_373-1491911889:210869..210937TCONS_00062880-exon-scaffold_373-1491911889:210869..210937Clytia hemisphaericaexon
TCONS_00062880-exon-scaffold_373-1510915933:210869..210937TCONS_00062880-exon-scaffold_373-1510915933:210869..210937Clytia hemisphaericaexon
TCONS_00062880-exon-scaffold_373-1575043694:210869..210937TCONS_00062880-exon-scaffold_373-1575043694:210869..210937Clytia hemisphaericaexon
TCONS_00062880-exon-scaffold_373-1491911889:212234..213301TCONS_00062880-exon-scaffold_373-1491911889:212234..213301Clytia hemisphaericaexon
TCONS_00062880-exon-scaffold_373-1510915933:212234..213301TCONS_00062880-exon-scaffold_373-1510915933:212234..213301Clytia hemisphaericaexon
TCONS_00062880-exon-scaffold_373-1575043694:212234..213301TCONS_00062880-exon-scaffold_373-1575043694:212234..213301Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_373supercontigscaffold_373:206636..213301 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.30175	1.58832	0.492294	0	8.21559	7.71135	8.02518	7.76393	4.93539	2.99245	10.0472	6.68428	8.69257	12.1281	4.39788	7.60459	4.74481	8.95463	3.42851	1.60697	11.8731	14.1734	4.37445	3.34952	6.34398	6.18095	3.43969	1.23049	1.97538	2.20585
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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