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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062876 ID=TCONS_00062876|Name=TCONS_00062876|organism=Clytia hemisphaerica|type=transcript|length=1823bp
aaacaatgttttcaaaTACAACGATATGTTTTCAACGGTTAGGGTGGAAA
AAGGGTGGTAAAAAGGCGTTAGTTTGGTAATTTGGGGCGATATTCTTTAC
AGGTCAAATTTCTAAACGTTTGATATCCTGCTGAAGGGGAAAGCTGACGA
GTTTTAATAGTTGAATTAAAAACATACAAAATGACTATGTCACAGTTATA
CAAATAATAAAAAGGTACTAAGCTTTAAAGCCCTGTCAAGAAATTATGAG
TGtcaaaattatttaaatgtCAATTTAacctttcattttctctttatctt
ttccagaagaaaatcattaaaattggAATAATTTGAGACtttggtgggca
ttgctatctcCAGGTGGAATACgtcaaaagaaattcaagatAAATTTTAT
CACTTCACAAGATAAAGTTTGCTTTCAAAAACAACATTGACATCCAGTGA
GAAAGGAAACCCCCTGAAACCGACTTCAGATTACTCATAAACTACTGTAA
AACAGGATATCTCGCCGGAGGTCATATTTGCGGTCAAGAAGAGATCTTTA
TATGTGTATTTGATGAAGCTTTTGATGACGACTGGCAGAATGTTTGAGGA
GTAGTTTGTTCTTTGAGTCAACTTATTTGGAAGGCATTCTACATCACGTC
ATATGTGGAGAGTATAACTACGAGATTAACTGAGAGAGAGAACTTATTGA
TTTTACAATTGACTTGAACATAACAACACGTGCTTGAAACAAGATGGCTT
CCAAATCAATGCCGGCCACAGAATTTGAAGTTTACGTTTCATCGGCCGAT
AGTGGTATCGATTCTGACAGTGCTTCTATTGCCAAACTGAATTCCTCCTT
AGAAAGTATCGAACAGCGAAATGAGATCGATCCAACAACACTTCTGGCTG
ATAAAAACGCCCCACATAATGAAAGAGTGGAGGGGATCGGAAAAGCTTTA
GATTGGCTGCGCGATGAACTCACTAAAATGAAGGAAACGGATAAAAAGTT
GACGAAAAGGTTCATAAAAATGCGATCACGGATAGCCGACCATAAGGAGT
TCATAGAGAACGGAGGTTTGTTAGCGGTCGAACAGCCCATCCTCCTTGAA
ACAACAACAGACGATTGTACGTCAGAACTTATGAGAAGAAAAATGTCGCA
AAAACGACCTGATTATAATTTGATTGCTAAAGATGGTGCATTTCCGACAC
ATGGGCTAAACTTTGAGAATAACAAACGTGCGACGTGGGTTATATAAAGA
CTGGTACCAAGTTGTAGTAAAAGAAGAGTTACTGAAGTCAATTTTTGATG
GACGGATTTGTCAGAAAGCTTCGTTTCATGATCGCCGCTCAGCGTAAACA
TTGAAATGTAATTCCATAGAACAAAAGTGCGGAACGATGAAATGTTGATT
TGACCTTAACATATCTCATAACGGAATGAACTGCTTTCGAAAGACTCTTA
TGTGGATTACAATCTCAAAAACATGTTTCTTTGATTTCGAAAACGTGAAA
TCTTTGATTATTACACTGATCTGTTTTGTTTGTAAGCTAAGAGATTTAGT
TAGGATTGAGCTACGTAATGTAAATTTTCAGCTCACGGCTGCAGAGTACC
TTTTCAATCTCAGGATCCCAACTCGAACTATACCCTTTAAAGCTTGAAAA
CAGTTTATTTAATAACCAAAATTTTTAAGTCGTGTTGAACTTATTTTAAA
AATGAtatatattttgtaaaaattgtagttttgttaaatagtaaagtaaa
tatTCATTTTGGACCATAGGCATTATCGCAAAGGATATTTAAAGAGAAAA
TCAAGATGATAATGAATCAAccg Run BLAST on NCBI transcript from alignment at scaffold_373:55796..57618+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062876 ID=TCONS_00062876|Name=TCONS_00062876|organism=Clytia hemisphaerica|type=transcript|length=1823bp|location=Sequence derived from alignment at scaffold_373:55796..57618+ (Clytia hemisphaerica)
aaacaatgttttcaaaTACAACGATATGTTTTCAACGGTTAGGGTGGAAA
AAGGGTGGTAAAAAGGCGTTAGTTTGGTAATTTGGGGCGATATTCTTTAC
AGGTCAAATTTCTAAACGTTTGATATCCTGCTGAAGGGGAAAGCTGACGA
GTTTTAATAGTTGAATTAAAAACATACAAAATGACTATGTCACAGTTATA
CAAATAATAAAAAGGTACTAAGCTTTAAAGCCCTGTCAAGAAATTATGAG
TGtcaaaattatttaaatgtCAATTTAacctttcattttctctttatctt
ttccagaagaaaatcattaaaattggAATAATTTGAGACtttggtgggca
ttgctatctcCAGGTGGAATACgtcaaaagaaattcaagatAAATTTTAT
CACTTCACAAGATAAAGTTTGCTTTCAAAAACAACATTGACATCCAGTGA
GAAAGGAAACCCCCTGAAACCGACTTCAGATTACTCATAAACTACTGTAA
AACAGGATATCTCGCCGGAGGTCATATTTGCGGTCAAGAAGAGATCTTTA
TATGTGTATTTGATGAAGCTTTTGATGACGACTGGCAGAATGTTTGAGGA
GTAGTTTGTTCTTTGAGTCAACTTATTTGGAAGGCATTCTACATCACGTC
ATATGTGGAGAGTATAACTACGAGATTAACTGAGAGAGAGAACTTATTGA
TTTTACAATTGACTTGAACATAACAACACGTGCTTGAAACAAGATGGCTT
CCAAATCAATGCCGGCCACAGAATTTGAAGTTTACGTTTCATCGGCCGAT
AGTGGTATCGATTCTGACAGTGCTTCTATTGCCAAACTGAATTCCTCCTT
AGAAAGTATCGAACAGCGAAATGAGATCGATCCAACAACACTTCTGGCTG
ATAAAAACGCCCCACATAATGAAAGAGTGGAGGGGATCGGAAAAGCTTTA
GATTGGCTGCGCGATGAACTCACTAAAATGAAGGAAACGGATAAAAAGTT
GACGAAAAGGTTCATAAAAATGCGATCACGGATAGCCGACCATAAGGAGT
TCATAGAGAACGGAGGTTTGTTAGCGGTCGAACAGCCCATCCTCCTTGAA
ACAACAACAGACGATTGTACGTCAGAACTTATGAGAAGAAAAATGTCGCA
AAAACGACCTGATTATAATTTGATTGCTAAAGATGGTGCATTTCCGACAC
ATGGGCTAAACTTTGAGAATAACAAACGTGCGACGTGGGTTATATAAAGA
CTGGTACCAAGTTGTAGTAAAAGAAGAGTTACTGAAGTCAATTTTTGATG
GACGGATTTGTCAGAAAGCTTCGTTTCATGATCGCCGCTCAGCGTAAACA
TTGAAATGTAATTCCATAGAACAAAAGTGCGGAACGATGAAATGTTGATT
TGACCTTAACATATCTCATAACGGAATGAACTGCTTTCGAAAGACTCTTA
TGTGGATTACAATCTCAAAAACATGTTTCTTTGATTTCGAAAACGTGAAA
TCTTTGATTATTACACTGATCTGTTTTGTTTGTAAGCTAAGAGATTTAGT
TAGGATTGAGCTACGTAATGTAAATTTTCAGCTCACGGCTGCAGAGTACC
TTTTCAATCTCAGGATCCCAACTCGAACTATACCCTTTAAAGCTTGAAAA
CAGTTTATTTAATAACCAAAATTTTTAAGTCGTGTTGAACTTATTTTAAA
AATGAtatatattttgtaaaaattgtagttttgttaaatagtaaagtaaa
tatTCATTTTGGACCATAGGCATTATCGCAAAGGATATTTAAAGAGAAAA
TCAAGATGATAATGAATCAAccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062876-exon-scaffold_373-1491911889:55796..57618 | TCONS_00062876-exon-scaffold_373-1491911889:55796..57618 | Clytia hemisphaerica | exon |
| TCONS_00062876-exon-scaffold_373-1510915933:55796..57618 | TCONS_00062876-exon-scaffold_373-1510915933:55796..57618 | Clytia hemisphaerica | exon |
| TCONS_00062876-exon-scaffold_373-1575043694:55796..57618 | TCONS_00062876-exon-scaffold_373-1575043694:55796..57618 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_373 | supercontig | scaffold_373:55796..57618 + |
Blast
The following BLAST results are available for this feature:
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