TCONS_00062870 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062870
Unique NameTCONS_00062870
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length499

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062870 ID=TCONS_00062870|Name=TCONS_00062870|organism=Clytia hemisphaerica|type=transcript|length=499bp
TTTTCAGGTTGTATGCGTTTTCAGGTTGTATGCGTTTTTGGGTTACATAC
GTTTTCAGGTTGTATACGTTTTCGGGTTACATACGTTTTCAAGTTGCATA
CGTTTTTAGGATACATAAGCCTATCGAGtttaatatatttttcgagtGGC
ATACGTTTTCAAGTTTAAATGGTTTCAAGTTGTTTTATTGAGTTTTTAGG
GCTCGAACTGCGACCCNGATACATAAGCCTATCGAGtttaatatattttt
cgagtGGCATACGTTTTCAAGTTTAAATGGTTTCAAGTTGTTTTATTGAG
TTTTTAGGGCTCGAACTGCGACCCTCCACGGTTTTTGTTTCTAGCAGCCT
TGTTCTCAGAGACAGTCAGGGCACCCAAATTGGCGAACCGGGGCTAGAAA
GTGTTTTCATCCGAGAGGGTCAAGGAACGAGAGTAgctgtattatttttt
aaacgttttttgaggattttagaCTCTTAGGACTACGAATAGGATTAGG
Run BLAST on NCBI

transcript from alignment at scaffold_372:396778..397276

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062870 ID=TCONS_00062870|Name=TCONS_00062870|organism=Clytia hemisphaerica|type=transcript|length=499bp|location=Sequence derived from alignment at scaffold_372:396778..397276 (Clytia hemisphaerica)
CCTAATCCTATTCGTAGTCCTAAGAGtctaaaatcctcaaaaaacgttta
aaaaataatacagcTACTCTCGTTCCTTGACCCTCTCGGATGAAAACACT
TTCTAGCCCCGGTTCGCCAATTTGGGTGCCCTGACTGTCTCTGAGAACAA
GGCTGCTAGAAACAAAAACCGTGGAGGGTCGCAGTTCGAGCCCTAAAAAC
TCAATAAAACAACTTGAAACCATTTAAACTTGAAAACGTATGCCactcga
aaaatatattaaaCTCGATAGGCTTATGTATCNGGGTCGCAGTTCGAGCC
CTAAAAACTCAATAAAACAACTTGAAACCATTTAAACTTGAAAACGTATG
CCactcgaaaaatatattaaaCTCGATAGGCTTATGTATCCTAAAAACGT
ATGCAACTTGAAAACGTATGTAACCCGAAAACGTATACAACCTGAAAACG
TATGTAACCCAAAAACGCATACAACCTGAAAACGCATACAACCTGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039381XLOC_039381Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062870-exon-scaffold_372-1491911889:396778..397276TCONS_00062870-exon-scaffold_372-1491911889:396778..397276Clytia hemisphaericaexon
TCONS_00062870-exon-scaffold_372-1510915933:396778..397276TCONS_00062870-exon-scaffold_372-1510915933:396778..397276Clytia hemisphaericaexon
TCONS_00062870-exon-scaffold_372-1575043694:396778..397276TCONS_00062870-exon-scaffold_372-1575043694:396778..397276Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_372supercontigscaffold_372:396778..397276 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.34473	7.19428	5.40905	4.47144	0.166476	0	0.343976	0.488125	0.35886	0.403497	0	0.165222	1.02252	0.451559	0.069467	0.298195	0	0.131352	0.437535	0	0.146998	0.183246	0.796116	0.228682	0.134425	0	0	0	0.991806	0.146287
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062870 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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