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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062864 ID=TCONS_00062864|Name=TCONS_00062864|organism=Clytia hemisphaerica|type=transcript|length=1683bp
NNGGGAAGAATTGGTTTTATTTTTGGATTGgatttatttttgcattttga
taatttttacgcTGAATGATCAAGGCATGTCGTTGGTATTGGCCTCGATT
ATTCAAAGATATTAACCCCACTACCAAGATGATTTTCCGGTCTTTAATTA
CTGTACAGATGTTTTGCAAACTTTTCAGTTTTCTTGATGCTACTTACTCT
ACACGCTCTTCTcaagaaaaattgtttttcattcTTTGCCATTCGGTAAA
CCGAATTCTTTAGTGAGTGAACCCACATTTTGTgtttttcctttacaatg
agatctactttccaaccgtactttaaagcactttaaACCACTTGCAGTTT
TAAAATTTCCCTTTATATGTGCCAAATATTACGGTGGTGATTGTAAGGTA
ATCAAGTCGACAAATATCAATGAAATTAATGGCTCTTGGAATGAAGAGCT
TCTGGTTTCCTTCACTGCAAAAACTTGATTAGTTTTAGAACCTTTTCTAC
TTGTTTTTATGTTTCCatcatttttcttcttgatcttttttttaataaag
taatatttaatattttctaaacttttaatGAGAAGCGCAAATATTTAGaa
ctttttttttgcgtttttcatCTCCCTTCTACCACGAAAAAAGCTAAAAG
attttatgaattttgtttttttttaattagagaGAGATTTATTTAGGTTA
TTTGGGTGTTGTCTTCAGATTACGTTAACACTTTTTGACCTTTTGGCAAT
TTTAAGCAGGAGAGGTCGGGAATTCTACCTTAGGCTTATAATATCAAGAA
TAGAATTTCGGGTATTTTTAGTTCATAAAACTTGGCTTCGTTATGTAAAC
ATTGTCAACGATTAATTGGGTAATTTTTTTACAGAATGACTCTAATATAC
TTAAGTCGAAATTCCGCCAAAATTGgatctcaaattttcacttATCGAAA
ATTGTTAGTTAACTGTTCTActatttttgcctttaaaaGTTCTTCTCGGT
AACGCTATTTGGAAGACAAAGCTCAAAGGAAGTTTTATCTTTGAAGTCAA
TATACTTAGTGGACATTGATCAAAgcataaatcttttttcaagaaataCA
CCGGCCGGTACACAATATATATATTGACGTGAAATGGACGTTCcttttat
gtttctttttataagcccTAGCTTGAgtgttgaatttttatttttcgaga
CTTTTTGAATGAGATACTTGAAAATTCAGTCAGTAAGTGTGACCACTGGA
AGTGTTTCAATGTCCATATGACattggacgttgtgaacgctAGATGGATA
TTGATGAAACTTTGTTCGCCAGCTGGGGTAAGAAGGGGTTTTTTTTGGTC
CCAAATTGAAAATGCCAAAGGTTTGATCCACTCTATACTATATTTGACAC
gatttctttgtaatttttgtcGTTTTAATATTATGATAGGAAACTTTAGA
TGAGGAGAACTCAAACAAACCAGAGTACAGTAgtagagaaatttttttta
tttgatagatTTTAGAAGGtttattttaatgtcttttattttgataaaat
ttgtaacaattttttttctttcaaattttcgttgCTGTCGTTGTTTATCT
TTTATCTGTCGTCCCTCATTAAGATTTTGCCCTGGCTCTCTAATTCAAAG
GTGCCTAATCAACATCAGGTTTTAATACACGGA Run BLAST on NCBI transcript from alignment at scaffold_372:147613..149295 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062864 ID=TCONS_00062864|Name=TCONS_00062864|organism=Clytia hemisphaerica|type=transcript|length=1683bp|location=Sequence derived from alignment at scaffold_372:147613..149295 (Clytia hemisphaerica)
TCCGTGTATTAAAACCTGATGTTGATTAGGCACCTTTGAATTAGAGAGCC
AGGGCAAAATCTTAATGAGGGACGACAGATAAAAGATAAACAACGACAGc
aacgaaaatttgaaagaaaaaaaattgttacaaattttatcaaaataaaa
gacattaaaataaaCCTTCTAAAatctatcaaataaaaaaaatttctcta
cTACTGTACTCTGGTTTGTTTGAGTTCTCCTCATCTAAAGTTTCCTATCA
TAATATTAAAACgacaaaaattacaaagaaatcGTGTCAAATATAGTATA
GAGTGGATCAAACCTTTGGCATTTTCAATTTGGGACCAAAAAAAACCCCT
TCTTACCCCAGCTGGCGAACAAAGTTTCATCAATATCCATCTagcgttca
caacgtccaatGTCATATGGACATTGAAACACTTCCAGTGGTCACACTTA
CTGACTGAATTTTCAAGTATCTCATTCAAAAAGtctcgaaaaataaaaat
tcaacacTCAAGCTAgggcttataaaaagaaacataaaagGAACGTCCAT
TTCACGTCAATATATATATTGTGTACCGGCCGGTGtatttcttgaaaaaa
gatttatgcTTTGATCAATGTCCACTAAGTATATTGACTTCAAAGATAAA
ACTTCCTTTGAGCTTTGTCTTCCAAATAGCGTTACCGAGAAGAACtttta
aaggcaaaaatagTAGAACAGTTAACTAACAATTTTCGATaagtgaaaat
ttgagatcCAATTTTGGCGGAATTTCGACTTAAGTATATTAGAGTCATTC
TGTAAAAAAATTACCCAATTAATCGTTGACAATGTTTACATAACGAAGCC
AAGTTTTATGAACTAAAAATACCCGAAATTCTATTCTTGATATTATAAGC
CTAAGGTAGAATTCCCGACCTCTCCTGCTTAAAATTGCCAAAAGGTCAAA
AAGTGTTAACGTAATCTGAAGACAACACCCAAATAACCTAAATAAATCTC
tctctaattaaaaaaaaacaaaattcataaaatCTTTTAGCTTTTTTCGT
GGTAGAAGGGAGatgaaaaacgcaaaaaaaaagttCTAAATATTTGCGCT
TCTCattaaaagtttagaaaatattaaatattactttattaaaaaaaaga
tcaagaagaaaaatgatGGAAACATAAAAACAAGTAGAAAAGGTTCTAAA
ACTAATCAAGTTTTTGCAGTGAAGGAAACCAGAAGCTCTTCATTCCAAGA
GCCATTAATTTCATTGATATTTGTCGACTTGATTACCTTACAATCACCAC
CGTAATATTTGGCACATATAAAGGGAAATTTTAAAACTGCAAGTGGTtta
aagtgctttaaagtacggttggaaagtagatctcattgtaaaggaaaaac
ACAAAATGTGGGTTCACTCACTAAAGAATTCGGTTTACCGAATGGCAAAg
aatgaaaaacaatttttcttgAGAAGAGCGTGTAGAGTAAGTAGCATCAA
GAAAACTGAAAAGTTTGCAAAACATCTGTACAGTAATTAAAGACCGGAAA
ATCATCTTGGTAGTGGGGTTAATATCTTTGAATAATCGAGGCCAATACCA
ACGACATGCCTTGATCATTCAgcgtaaaaattatcaaaatgcaaaaataa
atcCAATCCAAAAATAAAACCAATTCTTCCCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062864-exon-scaffold_372-1491911889:147613..149295 | TCONS_00062864-exon-scaffold_372-1491911889:147613..149295 | Clytia hemisphaerica | exon |
| TCONS_00062864-exon-scaffold_372-1510915933:147613..149295 | TCONS_00062864-exon-scaffold_372-1510915933:147613..149295 | Clytia hemisphaerica | exon |
| TCONS_00062864-exon-scaffold_372-1575043694:147613..149295 | TCONS_00062864-exon-scaffold_372-1575043694:147613..149295 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_372 | supercontig | scaffold_372:147613..149295 . |
Blast
The following BLAST results are available for this feature:
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