TCONS_00062859 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062859
Unique NameTCONS_00062859
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062859 ID=TCONS_00062859|Name=TCONS_00062859|organism=Clytia hemisphaerica|type=transcript|length=366bp
NATTTCAACGGATTTACCAAATCTATTTTAGAAGATACCTTGTCTTTTCT
ACAAGTACCTGAGCAAAAAGACTACCTGAAACCTTCAAACATACATAACC
TTATATGTAGGATCCAGAACTTGCTTCCAGAGAGATGCGTCATTTGTAAT
GAATCTTATTGTGTAAGGTTGGAGGATAATCCCCTTCTTCAATGCGTCAT
GTGTGGACAGGATGTTCATAGGCAATGTTTTCTTCTTCAACTCGGTGCTG
CTGACCAAAATATGGACAGTGATAGTCTCTTGTCTATCATTAATCCACAT
AACATCAAAAACCTCTACTACCTTTGTGATCACTGTGCTAATGAGAACCT
CCCAAAGAGCGAAGNN
Run BLAST on NCBI

protein sequence of TCONS_00062859-protein

>TCONS_00062859-protein ID=TCONS_00062859-protein|Name=TCONS_00062859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
XFNGFTKSILEDTLSFLQVPEQKDYLKPSNIHNLICRIQNLLPERCVICN
ESYCVRLEDNPLLQCVMCGQDVHRQCFLLQLGAADQNMDSDSLLSIINPH
NIKNLYYLCDHCANENLPKSEX
Run BLAST on NCBI

transcript from alignment at scaffold_372:78136..78501

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062859 ID=TCONS_00062859|Name=TCONS_00062859|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at scaffold_372:78136..78501 (Clytia hemisphaerica)
NNCTTCGCTCTTTGGGAGGTTCTCATTAGCACAGTGATCACAAAGGTAGT
AGAGGTTTTTGATGTTATGTGGATTAATGATAGACAAGAGACTATCACTG
TCCATATTTTGGTCAGCAGCACCGAGTTGAAGAAGAAAACATTGCCTATG
AACATCCTGTCCACACATGACGCATTGAAGAAGGGGATTATCCTCCAACC
TTACACAATAAGATTCATTACAAATGACGCATCTCTCTGGAAGCAAGTTC
TGGATCCTACATATAAGGTTATGTATGTTTGAAGGTTTCAGGTAGTCTTT
TTGCTCAGGTACTTGTAGAAAAGACAAGGTATCTTCTAAAATAGATTTGG
TAAATCCGTTGAAATN

Coding sequence (CDS) from alignment at scaffold_372:78136..78501

>TCONS_00062859 ID=TCONS_00062859|Name=TCONS_00062859|organism=Clytia hemisphaerica|type=CDS|length=366bp|location=Sequence derived from alignment at scaffold_372:78136..78501 (Clytia hemisphaerica)
NNCTTCGCTCTTTGGGAGGTTCTCATTAGCACAGTGATCACAAAGGTAGT
AGAGGTTTTTGATGTTATGTGGATTAATGATAGACAAGAGACTATCACTG
TCCATATTTTGGTCAGCAGCACCGAGTTGAAGAAGAAAACATTGCCTATG
AACATCCTGTCCACACATGACGCATTGAAGAAGGGGATTATCCTCCAACC
TTACACAATAAGATTCATTACAAATGACGCATCTCTCTGGAAGCAAGTTC
TGGATCCTACATATAAGGTTATGTATGTTTGAAGGTTTCAGGTAGTCTTT
TTGCTCAGGTACTTGTAGAAAAGACAAGGTATCTTCTAAAATAGATTTGG
TAAATCCGTTGAAATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039370XLOC_039370Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062859-exon-scaffold_372-1491911889:78136..78501TCONS_00062859-exon-scaffold_372-1491911889:78136..78501Clytia hemisphaericaexon
TCONS_00062859-exon-scaffold_372-1510915933:78136..78501TCONS_00062859-exon-scaffold_372-1510915933:78136..78501Clytia hemisphaericaexon
TCONS_00062859-exon-scaffold_372-1575043694:78136..78501TCONS_00062859-exon-scaffold_372-1575043694:78136..78501Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062859-proteinTCONS_00062859-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_372supercontigscaffold_372:78136..78501 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.32687	5.50256	7.69978	5.09496	21.3316	26.9704	16.2549	22.8726	8.28702	13.0275	8.69975	16.7744	6.99066	6.55515	3.23463	4.9124	6.09189	6.55473	5.28471	4.5246	6.21641	4.37371	2.2458	2.20884	19.652	11.4313	1.34304	3.96821	3.39803	5.00285
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062859 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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