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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062858 ID=TCONS_00062858|Name=TCONS_00062858|organism=Clytia hemisphaerica|type=transcript|length=2479bp
ttttgactgtttgtattagttttagtttttattttcttagaaTAAACTGa
tctaaataaacaaaattcaaGTTAACCATAAACTTAACATGTGACATTGA
AGCCGCGCTTTTGTTCCAACAATCGAATGTAGAAGACTAAAGCTGGAATA
GCAACAATTTGCAGTCTCCGTCTCAGTATTTTGGCTTGCTTGCTCgttat
tttttatctttgtttggAACGCATTGCTTTAAAACACAAGACCATTCGAA
CTGAAAAACAAACTATCAATGAAGATAATTGAACCAACGAATTGATCCAC
ATAATTTGGTAATACTAGCTTTTTGGTGATTTGGAATTCATTACCGGACC
ATTCGAATCAGAAAACAAAATATCACTGAAGAAACTTTAAACAACTAact
tttgaatatattttgacTTGGAAAATATACCTTCTCGGTGAATCCTCTTT
CCTTTGGCTTGAAATTATCAGAGGATTGAATCTTCATTATGTGGGAACTG
AGAACAATAATCAATGTGATTCTGCTCCTTGTTGCCAGTGTATCGTTAGT
GGATAACGTTGCTGGTGATAGACATCACCACATTCACCAACAGCATTGGG
CAAATCACCAACGCAAACTTGATGATAAGAATGATATTGAAGTTGACTTA
ACACCTAATATCATCAAAAATAATGACCAGTATCAAATCAATGTGGGTAC
AAATGAAGAAGATGACCAACTCAATCCGGGTGCAAACAACAATGACATTG
AAATCGATATAACacccaaatttgacaaaaataataacattgaACTTGTT
CCTAAAGACACCGATTTTGAATCTGAATTCGACGAAATTTATGATAAAAC
TGATGTTGAAAATAGATTTCCCTTAAACGATGATACAGAAGACATTGTTG
ATGATTTAattattcaagaaaataaacaaGGAAAACGATACGATTCTCAA
CACAAGCACCAGAAAATGATTGCCAAAGATGATGATGAAATTAATAGCCT
CTATGATAAAGGATATGAGAGAtatctcggtcaaaatatacaGCAGGGCC
ACAAAATCTTATCCAGCAGAGATTTCAATAAGAAAAACCGCCAGAATCTT
AAGAATCGCCAGATATCCAGAAATAGGGAAGGCAGGTTTTACAATCCgac
attttgtttttatagaacAGACACAGAAACGAAAAAGACTTGTTATGGTG
ATTTATGTATTGATGTTGTCATCACAAAGTTTATACAAGAGTGCATCAGT
ATTTAATTGGATCGTATTGTGTTTTTTACAATaacctacaatcatggtca
taatatttgagaaaaaaagggaaattcccacgaaatcttacaaccacaaa
cgatttgaaGCGCTCTAAACTAGGTTGGAGGGTTATAGTTTTagaacctt
aggatctgaggatccaaaagtccaagaatggtccaaaAGAGGTCAGAATA
TAGccaagtctataaacccctcccgaattgaaatattcgaatagatTTAT
TTATTAGCTCAAAAGGGGTAAgtagaaaacctggcccacccctctggccc
gggccatatggcctaccctTGGCCTACCCTTTGGCCCACACTTAcaactc
taaaaaagatttgattcttatCATTCTGAAAATCTACAAACCAATTCTGA
GGTTGGACTTTGGTTTTTCTGGCATTTAGAAAAACAANATATCATCAAAA
ATAATGACCAGTATCAAATCAATGTGGGTACAAATGAAGAAGATGACCAA
CTCAATCCGGGTGCAAACAACAATGACATTGAAATCGATATAACacccaa
atttgacaaaaataataacattgaACTTGTTCCTAAAGACACCGATTTTG
AATCTGAATTCGACGAAATTTATGATAAAACTGATGTTGAAAATAGATTT
CCCTTAAACGATGATACAGAAGACATTGTTGATGATTTAATTATTCaaga
aaacaaacaaggaaaacAATACGATTCTCAACACAAGCACCAGAAAATGA
TTGCCAAAGATGATGATGAAATTAATAGCCTCTATGATAAAGGATATGAG
AGATATCTCGGACAAAATATACAGCAGAGCCACAAAATCTTATCCAGCAG
AGATTTCAATAAGAAAAACCGCCAGAATCTTAAGAATCGCCAGATATCCA
GAAATAGGGAAGGCAGGTTTTACAATCCgacattttgtttttatagaacA
GACACAGAAACGAAAAAGACTTGTTATGGTGATTTATGTATTGATGTTGT
CATCACAAAGTTTATACAAGAGTGCATCAGTATTTAATTGGATCGTATTG
TGTTTTTTACAATaacctacaatcatggtcataatatttgagaaaaaaag
ggaaattcccacgaaatcttacaaccacaaacgatttgaaGCGCTCTAAA
CTAGGTTGGAGGGTTATAGTTTTagaaccttaggatctgaggatccaaaa
gtccaagaatggtccaaaAGAGGTCAGAA Run BLAST on NCBI protein sequence of TCONS_00062858-protein >TCONS_00062858-protein ID=TCONS_00062858-protein|Name=TCONS_00062858-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
MWELRTIINVILLLVASVSLVDNVAGDRHHHIHQQHWANHQRKLDDKNDI
EVDLTPNIIKNNDQYQINVGTNEEDDQLNPGANNNDIEIDITPKFDKNNN
IELVPKDTDFESEFDEIYDKTDVENRFPLNDDTEDIVDDLIIQENKQGKR
YDSQHKHQKMIAKDDDEINSLYDKGYERYLGQNIQQGHKILSSRDFNKKN
RQNLKNRQISRNREGRFYNPTFCFYRTDTETKKTCYGDLCIDVVITKFIQ
ECISI Run BLAST on NCBI transcript from alignment at scaffold_372:43257..45735 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062858 ID=TCONS_00062858|Name=TCONS_00062858|organism=Clytia hemisphaerica|type=transcript|length=2479bp|location=Sequence derived from alignment at scaffold_372:43257..45735 (Clytia hemisphaerica)
TTCTGACCTCTtttggaccattcttggacttttggatcctcagatcctaa
ggttctAAAACTATAACCCTCCAACCTAGTTTAGAGCGCttcaaatcgtt
tgtggttgtaagatttcgtgggaatttccctttttttctcaaatattatg
accatgattgtaggttATTGTAAAAAACACAATACGATCCAATTAAATAC
TGATGCACTCTTGTATAAACTTTGTGATGACAACATCAATACATAAATCA
CCATAACAAGTCTTTTTCGTTTCTGTGTCTgttctataaaaacaaaatgt
cGGATTGTAAAACCTGCCTTCCCTATTTCTGGATATCTGGCGATTCTTAA
GATTCTGGCGGTTTTTCTTATTGAAATCTCTGCTGGATAAGATTTTGTGG
CTCTGCTGTATATTTTGTCCGAGATATCTCTCATATCCTTTATCATAGAG
GCTATTAATTTCATCATCATCTTTGGCAATCATTTTCTGGTGCTTGTGTT
GAGAATCGTATTgttttccttgtttgttttcttGAATAATTAAATCATCA
ACAATGTCTTCTGTATCATCGTTTAAGGGAAATCTATTTTCAACATCAGT
TTTATCATAAATTTCGTCGAATTCAGATTCAAAATCGGTGTCTTTAGGAA
CAAGTtcaatgttattatttttgtcaaatttgggtGTTATATCGATTTCA
ATGTCATTGTTGTTTGCACCCGGATTGAGTTGGTCATCTTCTTCATTTGT
ACCCACATTGATTTGATACTGGTCATTATTTTTGATGATATNTTGTTTTT
CTAAATGCCAGAAAAACCAAAGTCCAACCTCAGAATTGGTTTGTAGATTT
TCAGAATGataagaatcaaatcttttttagagttgTAAGTGTGGGCCAAA
GGGTAGGCCAagggtaggccatatggcccgggccagaggggtgggccagg
ttttctacTTACCCCTTTTGAGCTAATAAATAAatctattcgaatatttc
aattcgggaggggtttatagacttggCTATATTCTGACCTCTtttggacc
attcttggacttttggatcctcagatcctaaggttctAAAACTATAACCC
TCCAACCTAGTTTAGAGCGCttcaaatcgtttgtggttgtaagatttcgt
gggaatttccctttttttctcaaatattatgaccatgattgtaggttATT
GTAAAAAACACAATACGATCCAATTAAATACTGATGCACTCTTGTATAAA
CTTTGTGATGACAACATCAATACATAAATCACCATAACAAGTCTTTTTCG
TTTCTGTGTCTgttctataaaaacaaaatgtcGGATTGTAAAACCTGCCT
TCCCTATTTCTGGATATCTGGCGATTCTTAAGATTCTGGCGGTTTTTCTT
ATTGAAATCTCTGCTGGATAAGATTTTGTGGCCCTGCtgtatattttgac
cgagataTCTCTCATATCCTTTATCATAGAGGCTATTAATTTCATCATCA
TCTTTGGCAATCATTTTCTGGTGCTTGTGTTGAGAATCGTATCGTTTTCC
ttgtttattttcttgaataatTAAATCATCAACAATGTCTTCTGTATCAT
CGTTTAAGGGAAATCTATTTTCAACATCAGTTTTATCATAAATTTCGTCG
AATTCAGATTCAAAATCGGTGTCTTTAGGAACAAGTtcaatgttattatt
tttgtcaaatttgggtGTTATATCGATTTCAATGTCATTGTTGTTTGCAC
CCGGATTGAGTTGGTCATCTTCTTCATTTGTACCCACATTGATTTGATAC
TGGTCATTATTTTTGATGATATTAGGTGTTAAGTCAACTTCAATATCATT
CTTATCATCAAGTTTGCGTTGGTGATTTGCCCAATGCTGTTGGTGAATGT
GGTGATGTCTATCACCAGCAACGTTATCCACTAACGATACACTGGCAACA
AGGAGCAGAATCACATTGATTATTGTTCTCAGTTCCCACATAATGAAGAT
TCAATCCTCTGATAATTTCAAGCCAAAGGAAAGAGGATTCACCGAGAAGG
TATATTTTCCAAgtcaaaatatattcaaaagtTAGTTGTTTAAAGTTTCT
TCAGTGATATTTTGTTTTCTGATTCGAATGGTCCGGTAATGAATTCCAAA
TCACCAAAAAGCTAGTATTACCAAATTATGTGGATCAATTCGTTGGTTCA
ATTATCTTCATTGATAGTTTGTTTTTCAGTTCGAATGGTCTTGTGTTTTA
AAGCAATGCGTTccaaacaaagataaaaaataacGAGCAAGCAAGCCAAA
ATACTGAGACGGAGACTGCAAATTGTTGCTATTCCAGCTTTAGTCTTCTA
CATTCGATTGTTGGAACAAAAGCGCGGCTTCAATGTCACATGTTAAGTTT
ATGGTTAACttgaattttgtttatttagatCAGTTTAttctaagaaaata
aaaactaaaactaatacaaacagtcaaaa Coding sequence (CDS) from alignment at scaffold_372:43257..45735 >TCONS_00062858 ID=TCONS_00062858|Name=TCONS_00062858|organism=Clytia hemisphaerica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_372:43257..45735 (Clytia hemisphaerica)
TTAAATACTGATGCACTCTTGTATAAACTTTGTGATGACAACATCAATAC
ATAAATCACCATAACAAGTCTTTTTCGTTTCTGTGTCTgttctataaaaa
caaaatgtcGGATTGTAAAACCTGCCTTCCCTATTTCTGGATATCTGGCG
ATTCTTAAGATTCTGGCGGTTTTTCTTATTGAAATCTCTGCTGGATAAGA
TTTTGTGGCCCTGCtgtatattttgaccgagataTCTCTCATATCCTTTA
TCATAGAGGCTATTAATTTCATCATCATCTTTGGCAATCATTTTCTGGTG
CTTGTGTTGAGAATCGTATCGTTTTCCttgtttattttcttgaataatTA
AATCATCAACAATGTCTTCTGTATCATCGTTTAAGGGAAATCTATTTTCA
ACATCAGTTTTATCATAAATTTCGTCGAATTCAGATTCAAAATCGGTGTC
TTTAGGAACAAGTtcaatgttattatttttgtcaaatttgggtGTTATAT
CGATTTCAATGTCATTGTTGTTTGCACCCGGATTGAGTTGGTCATCTTCT
TCATTTGTACCCACATTGATTTGATACTGGTCATTATTTTTGATGATATT
AGGTGTTAAGTCAACTTCAATATCATTCTTATCATCAAGTTTGCGTTGGT
GATTTGCCCAATGCTGTTGGTGAATGTGGTGATGTCTATCACCAGCAACG
TTATCCACTAACGATACACTGGCAACAAGGAGCAGAATCACATTGATTAT
TGTTCTCAGTTCCCACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062858-exon-scaffold_372-1491911889:43257..45735 | TCONS_00062858-exon-scaffold_372-1491911889:43257..45735 | Clytia hemisphaerica | exon |
| TCONS_00062858-exon-scaffold_372-1510915933:43257..45735 | TCONS_00062858-exon-scaffold_372-1510915933:43257..45735 | Clytia hemisphaerica | exon |
| TCONS_00062858-exon-scaffold_372-1575043694:43257..45735 | TCONS_00062858-exon-scaffold_372-1575043694:43257..45735 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_372 | supercontig | scaffold_372:43257..45735 . |
Blast
The following BLAST results are available for this feature:
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