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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062857 ID=TCONS_00062857|Name=TCONS_00062857|organism=Clytia hemisphaerica|type=transcript|length=933bp
TTGTTTTAATCCAATAAAGGTTTCCAAAAAGTAAATAGTCAGCGATACGC
TCTAAATGTGTCTGATAGTCACGCTCGTGTTTTTGTATCtcctcaaaata
aaaaaatgagtcAAGCTTTGGTGGAAGGTTGCGAGCTTTTTTTGAGATTA
TGTTTTCTTTGTAGTTTGTTGGCTTTGGTTCTTGGCTTTTAGCTTGAGAT
CGGATAAAAGAATTGTAAATGATGTGATCTGCATGGTGATTTGACGTATG
ATTTGCAAAGGACTTTAGATCGTTGAAACTACGCTCTTCTTCTTCAGCGT
TTGAGGAGATACCGTCAATGATTCGATATTGAAGAGGGGCGTGAATGATC
AGAGAATGGTAATATTGGCCATAAAATTTTCGTGGTGTTAGTTTAGTTGG
TTGTGGGAATTGCTCTTTTAAAAGGATATAATGGCGGAAACCAACGTTGT
GTAGGCGTAAAATTGACTGGACTGTGCGTTTATCTTCATATTGATATAGA
AGCTCGGTAATTTCACAAAGCGTTTCAAGCAATTCTATGTAAGGGAAACT
TTTTGGAAGGGTTTGACATAAACTCACTATGCTCTCTCGATAGTCGCAAC
CTCTCTTTGCTTCCTTTCCGTTAAatgatattttcttcaaatctttaaaa
tgttttttagcATTACGATCTAAATGTTCAGGAATCTCATCTAGAAGGTT
CTTAATGTGTTCTTTAATAACATGGAGTGGTTCTACAGGTAGAACTTCGT
AGGAATCCAAATTGTGATCAGAAAGAGGTTTAGTTGGATGGTTAAAAACA
AGCGCCGGGACACGATGGTTTCCACACATTTTTTCAGACAATTTCAACTT
TAATTCTTTCATAGTAGGCTTTTTTGTCGATTCAGCGTCGCAGATAGGAA
CTTTTCTGCCTTGCAACTCGTTTTTAAGGTCTG Run BLAST on NCBI protein sequence of TCONS_00062857-protein >TCONS_00062857-protein ID=TCONS_00062857-protein|Name=TCONS_00062857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=310bp
DLKNELQGRKVPICDAESTKKPTMKELKLKLSEKMCGNHRVPALVFNHPT
KPLSDHNLDSYEVLPVEPLHVIKEHIKNLLDEIPEHLDRNAKKHFKDLKK
ISFNGKEAKRGCDYRESIVSLCQTLPKSFPYIELLETLCEITELLYQYED
KRTVQSILRLHNVGFRHYILLKEQFPQPTKLTPRKFYGQYYHSLIIHAPL
QYRIIDGISSNAEEEERSFNDLKSFANHTSNHHADHIIYNSFIRSQAKSQ
EPKPTNYKENIISKKARNLPPKLDSFFYFEEIQKHERDYQTHLERIADYL
LFGNLYWIKT Run BLAST on NCBI transcript from alignment at scaffold_372:32787..33719 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062857 ID=TCONS_00062857|Name=TCONS_00062857|organism=Clytia hemisphaerica|type=transcript|length=933bp|location=Sequence derived from alignment at scaffold_372:32787..33719 (Clytia hemisphaerica)
CAGACCTTAAAAACGAGTTGCAAGGCAGAAAAGTTCCTATCTGCGACGCT
GAATCGACAAAAAAGCCTACTATGAAAGAATTAAAGTTGAAATTGTCTGA
AAAAATGTGTGGAAACCATCGTGTCCCGGCGCTTGTTTTTAACCATCCAA
CTAAACCTCTTTCTGATCACAATTTGGATTCCTACGAAGTTCTACCTGTA
GAACCACTCCATGTTATTAAAGAACACATTAAGAACCTTCTAGATGAGAT
TCCTGAACATTTAGATCGTAATgctaaaaaacattttaaagatttgaaga
aaatatcatTTAACGGAAAGGAAGCAAAGAGAGGTTGCGACTATCGAGAG
AGCATAGTGAGTTTATGTCAAACCCTTCCAAAAAGTTTCCCTTACATAGA
ATTGCTTGAAACGCTTTGTGAAATTACCGAGCTTCTATATCAATATGAAG
ATAAACGCACAGTCCAGTCAATTTTACGCCTACACAACGTTGGTTTCCGC
CATTATATCCTTTTAAAAGAGCAATTCCCACAACCAACTAAACTAACACC
ACGAAAATTTTATGGCCAATATTACCATTCTCTGATCATTCACGCCCCTC
TTCAATATCGAATCATTGACGGTATCTCCTCAAACGCTGAAGAAGAAGAG
CGTAGTTTCAACGATCTAAAGTCCTTTGCAAATCATACGTCAAATCACCA
TGCAGATCACATCATTTACAATTCTTTTATCCGATCTCAAGCTAAAAGCC
AAGAACCAAAGCCAACAAACTACAAAGAAAACATAATCTCAAAAAAAGCT
CGCAACCTTCCACCAAAGCTTgactcatttttttattttgaggaGATACA
AAAACACGAGCGTGACTATCAGACACATTTAGAGCGTATCGCTGACTATT
TACTTTTTGGAAACCTTTATTGGATTAAAACAA Coding sequence (CDS) from alignment at scaffold_372:32787..33719 >TCONS_00062857 ID=TCONS_00062857|Name=TCONS_00062857|organism=Clytia hemisphaerica|type=CDS|length=930bp|location=Sequence derived from alignment at scaffold_372:32787..33719 (Clytia hemisphaerica)
GACCTTAAAAACGAGTTGCAAGGCAGAAAAGTTCCTATCTGCGACGCTGA
ATCGACAAAAAAGCCTACTATGAAAGAATTAAAGTTGAAATTGTCTGAAA
AAATGTGTGGAAACCATCGTGTCCCGGCGCTTGTTTTTAACCATCCAACT
AAACCTCTTTCTGATCACAATTTGGATTCCTACGAAGTTCTACCTGTAGA
ACCACTCCATGTTATTAAAGAACACATTAAGAACCTTCTAGATGAGATTC
CTGAACATTTAGATCGTAATgctaaaaaacattttaaagatttgaagaaa
atatcatTTAACGGAAAGGAAGCAAAGAGAGGTTGCGACTATCGAGAGAG
CATAGTGAGTTTATGTCAAACCCTTCCAAAAAGTTTCCCTTACATAGAAT
TGCTTGAAACGCTTTGTGAAATTACCGAGCTTCTATATCAATATGAAGAT
AAACGCACAGTCCAGTCAATTTTACGCCTACACAACGTTGGTTTCCGCCA
TTATATCCTTTTAAAAGAGCAATTCCCACAACCAACTAAACTAACACCAC
GAAAATTTTATGGCCAATATTACCATTCTCTGATCATTCACGCCCCTCTT
CAATATCGAATCATTGACGGTATCTCCTCAAACGCTGAAGAAGAAGAGCG
TAGTTTCAACGATCTAAAGTCCTTTGCAAATCATACGTCAAATCACCATG
CAGATCACATCATTTACAATTCTTTTATCCGATCTCAAGCTAAAAGCCAA
GAACCAAAGCCAACAAACTACAAAGAAAACATAATCTCAAAAAAAGCTCG
CAACCTTCCACCAAAGCTTgactcatttttttattttgaggaGATACAAA
AACACGAGCGTGACTATCAGACACATTTAGAGCGTATCGCTGACTATTTA
CTTTTTGGAAACCTTTATTGGATTAAAACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062857-exon-scaffold_372-1491911889:32787..33719 | TCONS_00062857-exon-scaffold_372-1491911889:32787..33719 | Clytia hemisphaerica | exon |
| TCONS_00062857-exon-scaffold_372-1510915933:32787..33719 | TCONS_00062857-exon-scaffold_372-1510915933:32787..33719 | Clytia hemisphaerica | exon |
| TCONS_00062857-exon-scaffold_372-1575043694:32787..33719 | TCONS_00062857-exon-scaffold_372-1575043694:32787..33719 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_372 | supercontig | scaffold_372:32787..33719 . |
Blast
The following BLAST results are available for this feature:
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