TCONS_00062856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062856
Unique NameTCONS_00062856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062856 ID=TCONS_00062856|Name=TCONS_00062856|organism=Clytia hemisphaerica|type=transcript|length=812bp
AcagtaaataaatttttgttttggtaaACGTTAAAGTCTTGGATTTTTTT
ACAACTAAGCACACAATGAATAATTTCCTccaaaaaagcttaaaatctgA
ACGTTAGAAATGTGCTAAATGATAATGAGACTAAAAAAGCCAAACTGTGA
TATAAAGACTACTTCAACGATCAAAGCTTTGCGTTGGAAGAACTATCCAT
TGTGATAATCAGAACATGATGCATATCTATTTACAAAaagggtaaataaa
attaacaaaataatgTGCTGTTAAAAAGGCAAGGGGGATGGGGAGTTAAT
TGGGGATTTTAAGCAACTAAGTCCAGCTCAGTTACTTCAAACACATGCCA
CAACTATAAAGAATGTTCAAGCAAAAGATCAACCTAAACTaatatcaaat
aaaaacaaacagttTAGCAATGTAAAGTTTTTATTGTGATTCATCAGAAT
CATCTGTGTCAGCAGCTGCTAGTGCTGACCTCTCAATTCGGTCAACAATA
TATGtcaattttgaatatttcactTTCACACGCATCCCAATAAgttgttt
taaaaatgaaattttgtttgaaatgtctACTGTGGTTAACACGACCATTT
TTGAATTGACACAACACAAATTTACTAAACCACTACTTGCTTTGACACTG
AATTTAACTTCAGCTTTCTTAATCACATCTTCTTTTCCAGAGACTTTCGA
ACAAATACTGTTAGTGCAAATGAAAATATGTTCATTAAGATCTACAATAC
TTTTGCAATATGGGCAAATGTAAACAGGCTCTAGTGAAGACATGGTCACG
TTTGAAATTGTN
Run BLAST on NCBI

protein sequence of TCONS_00062856-protein

>TCONS_00062856-protein ID=TCONS_00062856-protein|Name=TCONS_00062856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
TISNVTMSSLEPVYICPYCKSIVDLNEHIFICTNSICSKVSGKEDVIKKA
EVKFSVKASSGLVNLCCVNSKMVVLTTVDISNKISFLKQLIGMRVKVKYS
KLTYIVDRIERSALAAADTDDSDESQ
Run BLAST on NCBI

transcript from alignment at scaffold_372:3894..4705

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062856 ID=TCONS_00062856|Name=TCONS_00062856|organism=Clytia hemisphaerica|type=transcript|length=812bp|location=Sequence derived from alignment at scaffold_372:3894..4705 (Clytia hemisphaerica)
NACAATTTCAAACGTGACCATGTCTTCACTAGAGCCTGTTTACATTTGCC
CATATTGCAAAAGTATTGTAGATCTTAATGAACATATTTTCATTTGCACT
AACAGTATTTGTTCGAAAGTCTCTGGAAAAGAAGATGTGATTAAGAAAGC
TGAAGTTAAATTCAGTGTCAAAGCAAGTAGTGGTTTAGTAAATTTGTGTT
GTGTCAATTCAAAAATGGTCGTGTTAACCACAGTagacatttcaaacaaa
atttcatttttaaaacaacTTATTGGGATGCGTGTGAAagtgaaatattc
aaaattgaCATATATTGTTGACCGAATTGAGAGGTCAGCACTAGCAGCTG
CTGACACAGATGATTCTGATGAATCACAATAAAAACTTTACATTGCTAaa
ctgtttgtttttatttgatattAGTTTAGGTTGATCTTTTGCTTGAACAT
TCTTTATAGTTGTGGCATGTGTTTGAAGTAACTGAGCTGGACTTAGTTGC
TTAAAATCCCCAATTAACTCCCCATCCCCCTTGCCTTTTTAACAGCAcat
tattttgttaattttatttacccttTTTGTAAATAGATATGCATCATGTT
CTGATTATCACAATGGATAGTTCTTCCAACGCAAAGCTTTGATCGTTGAA
GTAGTCTTTATATCACAGTTTGGCTTTTTTAGTCTCATTATCATTTAGCA
CATTTCTAACGTTcagattttaagcttttttggAGGAAATTATTCATTGT
GTGCTTAGTTGTAAAAAAATCCAAGACTTTAACGTttaccaaaacaaaaa
tttatttactgT

Coding sequence (CDS) from alignment at scaffold_372:3894..4705

>TCONS_00062856 ID=TCONS_00062856|Name=TCONS_00062856|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_372:3894..4705 (Clytia hemisphaerica)
ACAATTTCAAACGTGACCATGTCTTCACTAGAGCCTGTTTACATTTGCCC
ATATTGCAAAAGTATTGTAGATCTTAATGAACATATTTTCATTTGCACTA
ACAGTATTTGTTCGAAAGTCTCTGGAAAAGAAGATGTGATTAAGAAAGCT
GAAGTTAAATTCAGTGTCAAAGCAAGTAGTGGTTTAGTAAATTTGTGTTG
TGTCAATTCAAAAATGGTCGTGTTAACCACAGTagacatttcaaacaaaa
tttcatttttaaaacaacTTATTGGGATGCGTGTGAAagtgaaatattca
aaattgaCATATATTGTTGACCGAATTGAGAGGTCAGCACTAGCAGCTGC
TGACACAGATGATTCTGATGAATCACAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039367XLOC_039367Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062856-proteinTCONS_00062856-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062856-exon-scaffold_372-1491911889:3894..4705TCONS_00062856-exon-scaffold_372-1491911889:3894..4705Clytia hemisphaericaexon
TCONS_00062856-exon-scaffold_372-1510915933:3894..4705TCONS_00062856-exon-scaffold_372-1510915933:3894..4705Clytia hemisphaericaexon
TCONS_00062856-exon-scaffold_372-1575043694:3894..4705TCONS_00062856-exon-scaffold_372-1575043694:3894..4705Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_372supercontigscaffold_372:3894..4705 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	26.5005	16.269	13.3887	12.6051	9.64825	8.77148	12.7268	22.3034	9.20534	5.62062	0.0668174	0	0	0	0	0	0	0	0	0	1.70556	5.18666	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top