TCONS_00062838 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062838
Unique NameTCONS_00062838
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2116

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062838 ID=TCONS_00062838|Name=TCONS_00062838|organism=Clytia hemisphaerica|type=transcript|length=2116bp
NGGtaagaaaatgatcaaaaattcCAATAACAACATCATGGCCAAAAGCA
AAAGTACACCTAACATGAAACAATTTAAGATTGAAAACGATACAGAGGTT
ACACAGAAGAAACAAGATCGAGCTGCACGATTTCAGAAAGACTTCAAGAA
GTCTTCGAGCTTCAATTCGTCCAATTTAATACCGAAAGGAGAATCACCAA
TGGATGAAGATGTCGACATGAACTTTCACATCAACGGATACTGCCAAGAT
TTGACAAAACCATATTTACGTTTAACTTCGGCGCCTGATCCATCGACAGT
CCGTCCCGTCAACATTTTGAAGAAGTCATTGGAACACGTCGAAACGCAAT
GGAAGAAGAAGAACGACTACCATTTCGCTTGCGAACAGATGAAGTCCATC
CGTCAAGATTTGACCGTCCAAGGAATTGAAAACGAATTCACAGTTACAGT
ATATGAAACCCACGCTAGAATTGCTCTCGAAAAAGGTGATCGAGAGGAAT
TCAATCAATGCCAAACGTGTTTACGTAGGCTTTACAGCAAAGGAATCAAC
GGTCAAGTAGCCGAGTTTACGGCCTACAGTATTCTCTACTATATTTACAC
AAAAAGCACTTTGGACTTAAATTCTTGTCTTGCCTCACTGACCAAAGATC
TGAAGAAAGACGCGCTTGTTCAACACGCCCTGTCGGTGCGCTCTGCATTG
GCACTAGATAATTATCgttcatttttcaagttttatttacaAGCACCAAA
AATGGGTGGATCTCTCATTGACCTTTTTATAGCTAGGGAACGTAAAGAAG
CACTCAAACGGCTAGTGAAGGCGTATCGGCCAAGTTTAAGTGTCGCACAT
ATAACAACCCAATTAGCCTTCAAATCTGAAGACGAATGCCTCGCTTGGCT
TCAAGAATTGAATATCACATTCCTTGCTAACGACCCCACTAAAGTTGATT
GTAAAGCATCTGTTGTTACATAAGGGAGAGAGCATACAGCTCGTTCGAGT
TTTTTCATGGCTGTGAAAGTTGGTTGAGTGCCTCATCCAATGAAAAGCAA
AGGAGGAAAGAAGCCTGATTTTCATGTCAAGGTCCTCTCATTTTACCAAG
AAGGTTTTATTCGCACCCCCTACACGGTAGTAGTAGTTCAGTCACTACAC
AAAAAGAGACTaagctttaaaaaatgaaaaataaggtCCTGTTCATAGAT
CCTGCCCTATATCTTATCCTGTTCGCTGTGCTGTCACTATGTCAATTCAT
CCTACATGGTGTTTCTACCTACCCTTTAATTCAGTTAAATTTACAGCATT
TTCAACACGTAGCACGCATTATATATGGTATCCCTTATGAACTATATTAT
GAAAGTCACGGTAGGTTGGTGGTTCTTAATAAATGAACAGTAAATGGTTA
TTTCCTTGAAATTGAAAGGTTTGTAAGTCTCAATAAACCGAGTGCTATTG
GAGCAGATTCAGACATTTCAAGTATTACAATATTAACATTGCATTTTACG
GCAAGAAGAAATTGTTACGACTGCTCTATGCAGCATGTCACAATGAAAGA
TATACAACAAACATGATTGGATACGATTTTGACAGTGCTTATATGCTTGT
CAAATCGTACACAGAGCAAATAGACTGATACTAGCTAGAGTTAGCTCTGT
TTTGATGTCTTGGATTACCTAAGGAAAAACAATTCATGgagaaattttga
tgaaaatactCTGATTTCGTTTTGTTTTatgattaattttttcactagaT
GTAGGCGGTATTGTTGCTTATATTTTATGAATTGTATTCATATGACATGA
CGACTTAAACCCTGGACCCTGTTCCCTTATCCTTTTCCCCTGATCTTTTA
TAATGTCAATTTCAGTTTTGAATCTTTGTTATCGATTAGATGCTTGATTT
GCACCCTGTTACGCCAGTTCCCCACTCTGACAAAGACGATTACGAAATTG
CAATTCCATTATTGTCTCTGCAGTCTTCTTTTAGAGTTAGTTAGAATTCA
GTGACaatctttttgtatttattttgtacAAATTGTATATATGATTTATG
AAATTATTATTCTTTTTTCTTACTAAAAGATTCAGATCTACGATTCGAAG
AAATCGAACTCTCAat
Run BLAST on NCBI

transcript from alignment at scaffold_372:306681..311979-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062838 ID=TCONS_00062838|Name=TCONS_00062838|organism=Clytia hemisphaerica|type=transcript|length=5299bp|location=Sequence derived from alignment at scaffold_372:306681..311979- (Clytia hemisphaerica)
NGGTAAGAAAATGATCAAAAATTCCAATAACAACATCATGGCCAAAAGCA
AAAGTACACCTAACATGAAACAATTTAAGATTGAAAACGATACAGAGGTT
ACACAGAAGAAACAAGATCGAGCTGCACGATTTCAGAAAGACTTCAAGAA
GTCTTCGAGCTTCAATTCGTCCAATTTAATACCGAAAGGAGAATCAGTAA
GTTTTTCTCTACTGGTTTCCTAAAGATTTCAATACTGAAACTTTGGCAAA
CTTTATGGCGTAAATGGCTTTTTGGGGAGTCTCCATTACATCAACAACCG
GTGCTAAGTTTCACTCCTAAATTTATTATTGGCAAATATTTTATTAACTC
AATGGTTAACTAGGAACCTGTCATACCAGTTTTCTACCAATCGTACAGAC
CATTCAACTCTATAACAATACATCTTGTTTTCTTTTGCAGCCAATGGATG
AAGATGTCGACATGAACTTTCACATCAACGGATACTGCCAAGATTTGACA
AAACCATATTTACGTTTAACTTCGGTGGGTAATATGTTTTAACCCCTTTT
AACATGACATTTTCCATTTTACGTTAGATTTTTTTACAAGGTTCTGTAAA
GGAAACATTGTTAAGTTCTTACATAAATTTTAACATGCATGCAAAACTTA
CGGAAGGGTTTTAAGTAGGTGCTTGCTTGCATTACACTTAGGGGAGACTA
ATAGTTAACTGGAAGAGCTATCTTTGATTCCTAGTCATGTATGGTTTCAA
ATACATTACAGTTGATTTCTCGGTTCTATGATTTCCCCATTTTTCCTTCG
CAGGCGCCTGATCCATCGACAGTCCGTCCCGTCAACATTTTGAAGAAGTC
ATTGGAACACGTCGAAACGCAATGGAAGAAGAAGAACGACTACCATTTCG
CTTGCGAACAGATGAAGTCCATCCGTCAAGATTTGACCGTCCAAGGAATT
GAAAACGAATTCACAGTTACAGTATATGAAACCCACGCTAGAATTGCTCT
CGAAAAAGTAAGTTTTAGGCAGACATTCCCCTCTTCATAATTGTATCCCA
TCCTTTTTAAATATTTTTAAGCCATTTAATATGACCCATCCTTTTATAAT
AACCACAACTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTT
GTCTCTCTCTTTTTCCAGGGTGATCGAGAGGAATTCAATCAATGCCAAAC
GTGTTTACGTAGGCTTTACAGCAAAGGAATCAACGGTCAAGTAGCCGAGT
TTACGGCCTACAGTATTCTCTACTATATTTACACAAAAAGCACTTTGGAC
TTAAATTCTTGTCTTGCCTCACTGACCAAAGATCTGAAGAAAGACGCGCT
TGTTCAACACGCCCTGTCGGTGCGCTCTGCATTGGCACTAGATAATTATC
GTTCATTTTTCAAGTTTTATTTACAAGCACCAAAAATGGGTGGATCTCTC
ATTGACCTTTTTATAGCTAGGGAACGTAAAGAAGCACTCAAACGGCTAGT
GAAGGCGTAAGTATATAAACACCCCTCCCCTCCCCTTCTTTCTGAAACCA
GCCAGCCTATCCTAGAAATCAGTCGCCTTTCCTCACATCTAATGAGCAGT
TTAAACTTATCTCTTCAACCATTATCCTTTTAGTATATAAAGTCAACCCC
ATCTAAGCACATACATTTCTTTATAATTACCTCCTCTGTATAGTAGTACT
GTTAACACATCCTGTATTTCTTTTTAAGGCACTTTAAGTGTTAAAATTTT
CTTATTAAAAAAATCTAAGCTCCCCATTGAGGATTTTTTAGCCAGTGGGC
GACAGTATCGGTAAGAATGTGATTGGATTTGGAGAAACTTCGACTTAAAT
ATATGAGAATCTCAAATATCTTTACAAAACAATTTGCCCCAAAAAGTTTA
CTATTTTTCGCTGGGATAAATTCTCGGGACTCTGGGAATTTTTTCACCGA
TGCGCAGGTAAGTTTTAACCCTCGGGATAGACCTTGAGACTAAATCTGTC
CTCTGTAACTTCAGTCCTTTACAAAGCTCAATCTACCTTTTCTCTGTATA
TTCATGTTTTTTTTTCTTTCTTTTTCAACCGTGGTTGATAGGTATNATAC
CTTTTCTCTGTATATTCATGTTCATTTTATTTTCTTTTTCAACCGTGGTT
GATAGGTATCGGCCAAGTTTAAGTGTCGCACATATAACAACCCAATTAGC
CTTCAAATCTGAAGACGAATGCCTCGCTTGGCTTCAAGAATTGAATATCA
CATTCCTTGCTAACGACCCCACTAAAGTTGATTGTAAAGCATCTGTTGTT
ACATAAGGGAGAGAGCATACAGCTCGTTCGAGTTTTTTCATGGCTGTGAA
AGTTGGTTGAGTGCCTCATCCAATGAAAAGCAAAGGAGGAAAGAAGCCTG
ATTTTCATGTCAAGGTCCTCTCATTTTACCAAGAAGGTTTTATTCGCACC
CCCTACACGGTAGTAGTAGTTCAGTCACTACACAAAAAGAGACTAAGCTT
TAAAAAATGAAAAATAAGGTCCTGTTCATAGATCCTGCCCTATATCTTAT
CCTGTTCGCTGTGCTGTCACTATGTCAATTCATCCTACATGGTGTTTCTA
CCTACCCTTTAATTCAGTTAAATTTACAGCATTTTCAACACGTAGCACGC
ATTATATATGGTATCCCTTATGAACTATATTATGAAAGTCACGGTAGGTT
GGTGGTTCTTAATAAATGAACAGTAAATGGTTATTTCCTTGAAATTGAAA
GGTTTGTAAGTCTCAATAAACCGAGTGCTATTGGAGCAGATTCAGACATT
TCAAGTATTACAATATTAACATTGCATTTTACGGCAAGAAGAAATTGTTA
CGACTGCTCTATGCAGCATGTCACAATGAAAGATATACAACAAACATGAT
TGGATACGATTTTGACAGTGCTTATATGCTTGTCAAATCGTACACAGAGC
AAATAGACTGATACTAGCTAGAGTTAGCTCTGTTTTGATGTCTTGGATTA
CCTAAGGAAAAACAATTCATGGAGAAATTTTGATGAAAATACTCTGATTT
CGTTTTGTTTTATGATTAATTTTTTCACTAGATGTAGGCGGTATTGTTGC
TTATATTTTATGAATTGTATTCATATGACATGACGACTTAAACCCTGGAC
CCTGTTCCCTTATCCTTTTCCCCTGATCTTTTATAATGTCAATTTCAGTT
TTGAATCTTTGTTATCGATTAGATGCTTGATTTGCACCCTGTTACGCCAG
TTCCCCACTCTGACAAAGACGATTACGAAATTGCAATTCCATTATTGTCT
CTGCAGTCTTCTTTTAGAGTTAGTTAGAATTCAGTGACAATCTTTTTGTA
TTTATTTTGTACAAATTGTATATATGATTTATGAAATTATTATTCTTTTT
TCTTACTAAAAGATTCAGATCTACGATTCGAAGAAATCGAACTCTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039362XLOC_039362Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062838-exon-scaffold_372-1575043694:311784..311979TCONS_00062838-exon-scaffold_372-1575043694:311784..311979Clytia hemisphaericaexon
TCONS_00062838-exon-scaffold_372-1575043694:311456..311539TCONS_00062838-exon-scaffold_372-1575043694:311456..311539Clytia hemisphaericaexon
TCONS_00062838-exon-scaffold_372-1575043694:310973..311176TCONS_00062838-exon-scaffold_372-1575043694:310973..311176Clytia hemisphaericaexon
TCONS_00062838-exon-scaffold_372-1575043694:308624..308961TCONS_00062838-exon-scaffold_372-1575043694:308624..308961Clytia hemisphaericaexon
TCONS_00062838-exon-scaffold_372-1575043694:306681..307974TCONS_00062838-exon-scaffold_372-1575043694:306681..307974Clytia hemisphaericaexon
TCONS_00062838-exon-scaffold_372-1510915933:311784..311979TCONS_00062838-exon-scaffold_372-1510915933:311784..311979Clytia hemisphaericaexon
TCONS_00062838-exon-scaffold_372-1510915933:311456..311539TCONS_00062838-exon-scaffold_372-1510915933:311456..311539Clytia hemisphaericaexon
TCONS_00062838-exon-scaffold_372-1510915933:310973..311176TCONS_00062838-exon-scaffold_372-1510915933:310973..311176Clytia hemisphaericaexon
TCONS_00062838-exon-scaffold_372-1510915933:308624..308961TCONS_00062838-exon-scaffold_372-1510915933:308624..308961Clytia hemisphaericaexon
TCONS_00062838-exon-scaffold_372-1510915933:306681..307974TCONS_00062838-exon-scaffold_372-1510915933:306681..307974Clytia hemisphaericaexon
TCONS_00062838-exon-scaffold_372-1491911889:311784..311979TCONS_00062838-exon-scaffold_372-1491911889:311784..311979Clytia hemisphaericaexon
TCONS_00062838-exon-scaffold_372-1491911889:311456..311539TCONS_00062838-exon-scaffold_372-1491911889:311456..311539Clytia hemisphaericaexon
TCONS_00062838-exon-scaffold_372-1491911889:310973..311176TCONS_00062838-exon-scaffold_372-1491911889:310973..311176Clytia hemisphaericaexon
TCONS_00062838-exon-scaffold_372-1491911889:308624..308961TCONS_00062838-exon-scaffold_372-1491911889:308624..308961Clytia hemisphaericaexon
TCONS_00062838-exon-scaffold_372-1491911889:306681..307974TCONS_00062838-exon-scaffold_372-1491911889:306681..307974Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_372supercontigscaffold_372:306681..311979 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.33271	4.86949	2.02166	1.16656	19.6484	11.4973	12.5668	11.9781	8.60472	12.7682	9.11605	6.8264	9.58751	11.3383	11.0506	12.0398	9.551	11.1115	11.0322	8.08947	4.87	6.41917	9.10295	8.82624	3.37595	7.09822	3.53306	1.57375	9.44101	10.1172
Blast
[Close]
BLAST of TCONS_00062838 vs. Swiss-Prot (Human)
Match: LENG8 (Leukocyte receptor cluster member 8 OS=Homo sapiens GN=LENG8 PE=1 SV=2)

HSP 1 Score: 277.33 bits (708), Expect = 2.833e-81
Identity = 144/247 (58.30%), Postives = 167/247 (67.61%), Query Frame = 2 
Query:   89 DTEVTQKKQDRAARFQKDXXXXXXXXXXXLIPKGESPMDEDVDMN-FHINGYCQDLTKPYLRLTSAPDPSTVRPVNILKKSLEHVETQWKKKNDYHFACEQMKSIRQDLTVQGIENEFTVTVYETHARIALEKGDREEFNQCQTCLRRLYSKGINGQVAEFTAYSILYYIYTKSTLDLNSCLASLTKDLKKDALVQHALSVRSALALDNYRSFFKFYLQAPKMGGSLIDLFIARERKEALKRLVKAY 826
            D E   KKQ RAARFQ    +        L          D D     I G C D+TK YLRLT APDPSTVRPV +LKKSL  V+  WK+K DY FACEQMKSIRQDLTVQGI  EFTV VYETHARIALEKGD EEFNQCQT L+ LY++ + G V EFTAY ILYYI+TK++ D+ + LA LT++LK D  V HAL++R+A AL NY  FF+ Y  AP M G L+D F  RERK ALK ++K Y
Sbjct:  465 DPERELKKQKRAARFQHGHSRRLRLEPLVLQMSSLESSGADPDWQELQIVGTCPDITKHYLRLTCAPDPSTVRPVAVLKKSLCMVKCHWKEKQDYAFACEQMKSIRQDLTVQGIRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENLPGNVGEFTAYRILYYIFTKNSGDITTELAYLTRELKADPCVAHALALRTAWALGNYHRFFRLYCHAPCMSGYLVDKFADRERKVALKAMIKTY 711
The following BLAST results are available for this feature:
BLAST of TCONS_00062838 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LENG82.833e-8158.30Leukocyte receptor cluster member 8 OS=Homo sapien... [more]
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