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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062837 ID=TCONS_00062837|Name=TCONS_00062837|organism=Clytia hemisphaerica|type=transcript|length=2700bp
GGtaagaaaatgatcaaaaattcCAATAACAACATCATGGCCAAAAGCAA
AAGTACACCTAACATGAAACAATTTAAGATTGAAAACGATACAGAGGTTA
CACAGAAGAAACAAGATCGAGCTGCACGATTTCAGAAAGACTTCAAGAAG
TCTTCGAGCTTCAATTCGTCCAATTTAATACCGAAAGGAGAATCACCAAT
GGATGAAGATGTCGACATGAACTTTCACATCAACGGATACTGCCAAGATT
TGACAAAACCATATTTACGTTTAACTTCGGCGCCTGATCCATCGACAGTC
CGTCCCGTCAACATTTTGAAGAAGTCATTGGAACACGTCGAAACGCAATG
GAAGAAGAAGAACGACTACCATTTCGCTTGCGAACAGATGAAGTCCATCC
GTCAAGATTTGACCGTCCAAGGAATTGAAAACGAATTCACAGTTACAGTA
TATGAAACCCACGCTAGAATTGCTCTCGAAAAAGGTGATCGAGAGGAATT
CAATCAATGCCAAACGTGTTTACGTAGGCTTTACAGCAAAGGAATCAACG
GTCAAGTAGCCGAGTTTACGGCCTACAGTATTCTCTACTATATTTACACA
AAAAGCACTTTGGACTTAAATTCTTGTCTTGCCTCACTGACCAAAGATCT
GAAGAAAGACGCGCTTGTTCAACACGCCCTGTCGGTGCGCTCTGCATTGG
CACTAGATAATTATCgttcatttttcaagttttatttacaAGCACCAAAA
ATGGGTGGATCTCTCATTGACCTTTTTATAGCTAGGGAACGTAAAGAAGC
ACTCAAACGGCTAGTGAAGGCGTAAGTATATAAACACCCCTCCCCTCCCC
TTCTTTCTGAAACCAGCCAGCCTATCCTAGAAATCAGTCGCCTTTCCTCA
CATCTAATGAGCAGTTTAAACTTATCTCTTCAACCATTATCCTTTTAGTA
TATAAAGTCAACCCCATCTAAGCACATACATTTCTTTATAATTACCTCCT
CTGTATAGTAGTACTGTTAACACATCCTGTATTTCTTTTTAAGGCACTTT
AAgtgttaaaattttcttattaaaaaaatctaagCTCCCCATTGAGgatt
ttttagccagtgggCGACAGTATCGGTAAGAATGTGATTGGATTTGGAGA
AACTTCGACTTAAATATATGAGAATCTCAAATATCTTTACAAAACAATTT
GCCCCAAAAAGTTTACTATTTTTCGCTGGGATAAATTCTCGGGACTCTGG
GAATTTTTTCACCGATGCGCAGGTAAGTTTTAACCCTCGGGATAGACCTT
GAGACTAAATCTGTCCTCTGTAACTTCAGTCCTTTACAAAGCTCAATCTA
CCTTTTCTCTGtatattcatgtttttttttctttctttttcaaccgTGGT
TGATAGGTATCGGCCAAGTTTAAGTGTCGCACATATAACAACCCAATTAG
CCTTCAAATCTGAAGACGAATGCCTCGCTTGGCTTCAAGAATTGAATATC
ACATTCCTTGCTAACGACCCCACTAAAGTTGATTGTAAAGCATCTGTTGT
TACATAAGGGAGAGAGCATACAGCTCGTTCGAGTTTTTTCATGGCTGTGA
AAGTTGGTTGAGTGCCTCATCCAATGAAAAGCAAAGGAGGAAAGAAGCCT
GATTTTCATGTCAAGGTCCTCTCATTTTACCAAGAAGGTTTTATTCGCAC
CCCCTACACGGTAGTAGTAGTTCAGTCACTACACAAAAAGAGACTaagct
ttaaaaaatgaaaaataaggtCCTGTTCATAGATCCTGCCCTATATCTTA
TCCTGTTCGCTGTGCTGTCACTATGTCAATTCATCCTACATGGTGTTTCT
ACCTACCCTTTAATTCAGTTAAATTTACAGCATTTTCAACACGTAGCACG
CATTATATATGGTATCCCTTATGAACTATATTATGAAAGTCACGGTAGGT
TGGTGGTTCTTAATAAATGAACAGTAAATGGTTATTTCCTTGAAATTGAA
AGGTTTGTAAGTCTCAATAAACCGAGTGCTATTGGAGCAGATTCAGACAT
TTCAAGTATTACAATATTAACATTGCATTTTACGGCAAGAAGAAATTGTT
ACGACTGCTCTATGCAGCATGTCACAATGAAAGATATACAACAAACATGA
TTGGATACGATTTTGACAGTGCTTATATGCTTGTCAAATCGTACACAGAG
CAAATAGACTGATACTAGCTAGAGTTAGCTCTGTTTTGATGTCTTGGATT
ACCTAAGGAAAAACAATTCATGgagaaattttgatgaaaatactCTGATT
TCGTTTTGTTTTatgattaattttttcactagaTGTAGGCGGTATTGTTG
CTTATATTTTATGAATTGTATTCATATGACATGACGACTTAAACCCTGGA
CCCTGTTCCCTTATCCTTTTCCCCTGATCTTTTATAATGTCAATTTCAGT
TTTGAATCTTTGTTATCGATTAGATGCTTGATTTGCACCCTGTTACGCCA
GTTCCCCACTCTGACAAAGACGATTACGAAATTGCAATTCCATTATTGTC
TCTGCAGTCTTCTTTTAGAGTTAGTTAGAATTCAGTGACaatctttttgt
atttattttgtacAAATTGTATATATGATTTATGAAATTATTATTCTTTT
TTCTTACTAAAAGATTCAGATCTACGATTCGAAGAAATCGAACTCTCAat Run BLAST on NCBI transcript from alignment at scaffold_372:306681..311978- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062837 ID=TCONS_00062837|Name=TCONS_00062837|organism=Clytia hemisphaerica|type=transcript|length=5298bp|location=Sequence derived from alignment at scaffold_372:306681..311978- (Clytia hemisphaerica)
GGTAAGAAAATGATCAAAAATTCCAATAACAACATCATGGCCAAAAGCAA
AAGTACACCTAACATGAAACAATTTAAGATTGAAAACGATACAGAGGTTA
CACAGAAGAAACAAGATCGAGCTGCACGATTTCAGAAAGACTTCAAGAAG
TCTTCGAGCTTCAATTCGTCCAATTTAATACCGAAAGGAGAATCAGTAAG
TTTTTCTCTACTGGTTTCCTAAAGATTTCAATACTGAAACTTTGGCAAAC
TTTATGGCGTAAATGGCTTTTTGGGGAGTCTCCATTACATCAACAACCGG
TGCTAAGTTTCACTCCTAAATTTATTATTGGCAAATATTTTATTAACTCA
ATGGTTAACTAGGAACCTGTCATACCAGTTTTCTACCAATCGTACAGACC
ATTCAACTCTATAACAATACATCTTGTTTTCTTTTGCAGCCAATGGATGA
AGATGTCGACATGAACTTTCACATCAACGGATACTGCCAAGATTTGACAA
AACCATATTTACGTTTAACTTCGGTGGGTAATATGTTTTAACCCCTTTTA
ACATGACATTTTCCATTTTACGTTAGATTTTTTTACAAGGTTCTGTAAAG
GAAACATTGTTAAGTTCTTACATAAATTTTAACATGCATGCAAAACTTAC
GGAAGGGTTTTAAGTAGGTGCTTGCTTGCATTACACTTAGGGGAGACTAA
TAGTTAACTGGAAGAGCTATCTTTGATTCCTAGTCATGTATGGTTTCAAA
TACATTACAGTTGATTTCTCGGTTCTATGATTTCCCCATTTTTCCTTCGC
AGGCGCCTGATCCATCGACAGTCCGTCCCGTCAACATTTTGAAGAAGTCA
TTGGAACACGTCGAAACGCAATGGAAGAAGAAGAACGACTACCATTTCGC
TTGCGAACAGATGAAGTCCATCCGTCAAGATTTGACCGTCCAAGGAATTG
AAAACGAATTCACAGTTACAGTATATGAAACCCACGCTAGAATTGCTCTC
GAAAAAGTAAGTTTTAGGCAGACATTCCCCTCTTCATAATTGTATCCCAT
CCTTTTTAAATATTTTTAAGCCATTTAATATGACCCATCCTTTTATAATA
ACCACAACTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTG
TCTCTCTCTTTTTCCAGGGTGATCGAGAGGAATTCAATCAATGCCAAACG
TGTTTACGTAGGCTTTACAGCAAAGGAATCAACGGTCAAGTAGCCGAGTT
TACGGCCTACAGTATTCTCTACTATATTTACACAAAAAGCACTTTGGACT
TAAATTCTTGTCTTGCCTCACTGACCAAAGATCTGAAGAAAGACGCGCTT
GTTCAACACGCCCTGTCGGTGCGCTCTGCATTGGCACTAGATAATTATCG
TTCATTTTTCAAGTTTTATTTACAAGCACCAAAAATGGGTGGATCTCTCA
TTGACCTTTTTATAGCTAGGGAACGTAAAGAAGCACTCAAACGGCTAGTG
AAGGCGTAAGTATATAAACACCCCTCCCCTCCCCTTCTTTCTGAAACCAG
CCAGCCTATCCTAGAAATCAGTCGCCTTTCCTCACATCTAATGAGCAGTT
TAAACTTATCTCTTCAACCATTATCCTTTTAGTATATAAAGTCAACCCCA
TCTAAGCACATACATTTCTTTATAATTACCTCCTCTGTATAGTAGTACTG
TTAACACATCCTGTATTTCTTTTTAAGGCACTTTAAGTGTTAAAATTTTC
TTATTAAAAAAATCTAAGCTCCCCATTGAGGATTTTTTAGCCAGTGGGCG
ACAGTATCGGTAAGAATGTGATTGGATTTGGAGAAACTTCGACTTAAATA
TATGAGAATCTCAAATATCTTTACAAAACAATTTGCCCCAAAAAGTTTAC
TATTTTTCGCTGGGATAAATTCTCGGGACTCTGGGAATTTTTTCACCGAT
GCGCAGGTAAGTTTTAACCCTCGGGATAGACCTTGAGACTAAATCTGTCC
TCTGTAACTTCAGTCCTTTACAAAGCTCAATCTACCTTTTCTCTGTATAT
TCATGTTTTTTTTTCTTTCTTTTTCAACCGTGGTTGATAGGTATNATACC
TTTTCTCTGTATATTCATGTTCATTTTATTTTCTTTTTCAACCGTGGTTG
ATAGGTATCGGCCAAGTTTAAGTGTCGCACATATAACAACCCAATTAGCC
TTCAAATCTGAAGACGAATGCCTCGCTTGGCTTCAAGAATTGAATATCAC
ATTCCTTGCTAACGACCCCACTAAAGTTGATTGTAAAGCATCTGTTGTTA
CATAAGGGAGAGAGCATACAGCTCGTTCGAGTTTTTTCATGGCTGTGAAA
GTTGGTTGAGTGCCTCATCCAATGAAAAGCAAAGGAGGAAAGAAGCCTGA
TTTTCATGTCAAGGTCCTCTCATTTTACCAAGAAGGTTTTATTCGCACCC
CCTACACGGTAGTAGTAGTTCAGTCACTACACAAAAAGAGACTAAGCTTT
AAAAAATGAAAAATAAGGTCCTGTTCATAGATCCTGCCCTATATCTTATC
CTGTTCGCTGTGCTGTCACTATGTCAATTCATCCTACATGGTGTTTCTAC
CTACCCTTTAATTCAGTTAAATTTACAGCATTTTCAACACGTAGCACGCA
TTATATATGGTATCCCTTATGAACTATATTATGAAAGTCACGGTAGGTTG
GTGGTTCTTAATAAATGAACAGTAAATGGTTATTTCCTTGAAATTGAAAG
GTTTGTAAGTCTCAATAAACCGAGTGCTATTGGAGCAGATTCAGACATTT
CAAGTATTACAATATTAACATTGCATTTTACGGCAAGAAGAAATTGTTAC
GACTGCTCTATGCAGCATGTCACAATGAAAGATATACAACAAACATGATT
GGATACGATTTTGACAGTGCTTATATGCTTGTCAAATCGTACACAGAGCA
AATAGACTGATACTAGCTAGAGTTAGCTCTGTTTTGATGTCTTGGATTAC
CTAAGGAAAAACAATTCATGGAGAAATTTTGATGAAAATACTCTGATTTC
GTTTTGTTTTATGATTAATTTTTTCACTAGATGTAGGCGGTATTGTTGCT
TATATTTTATGAATTGTATTCATATGACATGACGACTTAAACCCTGGACC
CTGTTCCCTTATCCTTTTCCCCTGATCTTTTATAATGTCAATTTCAGTTT
TGAATCTTTGTTATCGATTAGATGCTTGATTTGCACCCTGTTACGCCAGT
TCCCCACTCTGACAAAGACGATTACGAAATTGCAATTCCATTATTGTCTC
TGCAGTCTTCTTTTAGAGTTAGTTAGAATTCAGTGACAATCTTTTTGTAT
TTATTTTGTACAAATTGTATATATGATTTATGAAATTATTATTCTTTTTT
CTTACTAAAAGATTCAGATCTACGATTCGAAGAAATCGAACTCTCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062837-exon-scaffold_372-1575043694:311784..311978 | TCONS_00062837-exon-scaffold_372-1575043694:311784..311978 | Clytia hemisphaerica | exon |
| TCONS_00062837-exon-scaffold_372-1575043694:311456..311539 | TCONS_00062837-exon-scaffold_372-1575043694:311456..311539 | Clytia hemisphaerica | exon |
| TCONS_00062837-exon-scaffold_372-1575043694:310973..311176 | TCONS_00062837-exon-scaffold_372-1575043694:310973..311176 | Clytia hemisphaerica | exon |
| TCONS_00062837-exon-scaffold_372-1575043694:308039..308961 | TCONS_00062837-exon-scaffold_372-1575043694:308039..308961 | Clytia hemisphaerica | exon |
| TCONS_00062837-exon-scaffold_372-1575043694:306681..307974 | TCONS_00062837-exon-scaffold_372-1575043694:306681..307974 | Clytia hemisphaerica | exon |
| TCONS_00062837-exon-scaffold_372-1510915933:311784..311978 | TCONS_00062837-exon-scaffold_372-1510915933:311784..311978 | Clytia hemisphaerica | exon |
| TCONS_00062837-exon-scaffold_372-1510915933:311456..311539 | TCONS_00062837-exon-scaffold_372-1510915933:311456..311539 | Clytia hemisphaerica | exon |
| TCONS_00062837-exon-scaffold_372-1510915933:310973..311176 | TCONS_00062837-exon-scaffold_372-1510915933:310973..311176 | Clytia hemisphaerica | exon |
| TCONS_00062837-exon-scaffold_372-1510915933:308039..308961 | TCONS_00062837-exon-scaffold_372-1510915933:308039..308961 | Clytia hemisphaerica | exon |
| TCONS_00062837-exon-scaffold_372-1510915933:306681..307974 | TCONS_00062837-exon-scaffold_372-1510915933:306681..307974 | Clytia hemisphaerica | exon |
| TCONS_00062837-exon-scaffold_372-1491911889:311784..311978 | TCONS_00062837-exon-scaffold_372-1491911889:311784..311978 | Clytia hemisphaerica | exon |
| TCONS_00062837-exon-scaffold_372-1491911889:311456..311539 | TCONS_00062837-exon-scaffold_372-1491911889:311456..311539 | Clytia hemisphaerica | exon |
| TCONS_00062837-exon-scaffold_372-1491911889:310973..311176 | TCONS_00062837-exon-scaffold_372-1491911889:310973..311176 | Clytia hemisphaerica | exon |
| TCONS_00062837-exon-scaffold_372-1491911889:308039..308961 | TCONS_00062837-exon-scaffold_372-1491911889:308039..308961 | Clytia hemisphaerica | exon |
| TCONS_00062837-exon-scaffold_372-1491911889:306681..307974 | TCONS_00062837-exon-scaffold_372-1491911889:306681..307974 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_372 | supercontig | scaffold_372:306681..311978 - |
Blast
BLAST of TCONS_00062837 vs. Swiss-Prot (Human)
Match: LENG8 (Leukocyte receptor cluster member 8 OS=Homo sapiens GN=LENG8 PE=1 SV=2) HSP 1 Score: 276.174 bits (705), Expect = 2.309e-79 Identity = 147/257 (57.20%), Postives = 170/257 (66.15%), Query Frame = 1
Query: 88 DTEVTQKKQDRAARFQKDXXXXXXXXXXXLIPKGESPMDEDVDMN-FHINGYCQDLTKPYLRLTSAPDPSTVRPVNILKKSLEHVETQWKKKNDYHFACEQMKSIRQDLTVQGIENEFTVTVYETHARIALEKGDREEFNQCQTCLRRLYSKGINGQVAEFTAYSILYYIYTKSTLDLNSCLASLTKDLKKDALVQHALSVRSALALDNYRSFFKFYLQAPKMGGSLIDLFIARERKEALKRLVKA*VYKHPSPPLL 855
D E KKQ RAARFQ + L D D I G C D+TK YLRLT APDPSTVRPV +LKKSL V+ WK+K DY FACEQMKSIRQDLTVQGI EFTV VYETHARIALEKGD EEFNQCQT L+ LY++ + G V EFTAY ILYYI+TK++ D+ + LA LT++LK D V HAL++R+A AL NY FF+ Y AP M G L+D F RERK ALK ++K V PLL
Sbjct: 465 DPERELKKQKRAARFQHGHSRRLRLEPLVLQMSSLESSGADPDWQELQIVGTCPDITKHYLRLTCAPDPSTVRPVAVLKKSLCMVKCHWKEKQDYAFACEQMKSIRQDLTVQGIRTEFTVEVYETHARIALEKGDHEEFNQCQTQLKSLYAENLPGNVGEFTAYRILYYIFTKNSGDITTELAYLTRELKADPCVAHALALRTAWALGNYHRFFRLYCHAPCMSGYLVDKFADRERKVALKAMIKTYVVPSSLLPLL 721
The following BLAST results are available for this feature:
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