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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062836 ID=TCONS_00062836|Name=TCONS_00062836|organism=Clytia hemisphaerica|type=transcript|length=2470bpRun BLAST on NCBI protein sequence of TCONS_00062836-protein >TCONS_00062836-protein ID=TCONS_00062836-protein|Name=TCONS_00062836-protein|organism=Clytia hemisphaerica|type=polypeptide|length=410bp MAAPNLSKNILTNAQAEALLKVYKFADVEETGKVDVATIITLAVQLMGPNRun BLAST on NCBI transcript from alignment at scaffold_372:293482..304953- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062836 ID=TCONS_00062836|Name=TCONS_00062836|organism=Clytia hemisphaerica|type=transcript|length=11472bp|location=Sequence derived from alignment at scaffold_372:293482..304953- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_372:293482..304953- >TCONS_00062836 ID=TCONS_00062836|Name=TCONS_00062836|organism=Clytia hemisphaerica|type=CDS|length=14796bp|location=Sequence derived from alignment at scaffold_372:293482..304953- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062836 vs. Swiss-Prot (Human)
Match: SEPT9 (Septin-9 OS=Homo sapiens GN=SEPT9 PE=1 SV=2) HSP 1 Score: 392.119 bits (1006), Expect = 3.793e-125 Identity = 184/303 (60.73%), Postives = 229/303 (75.58%), Query Frame = 2
Query: 554 KTQVD-GYVGFDSIQEQIRLNSLKRGFEFNVMVVGCSGLGKSTLINTLFKTRASRTSCTPENSE-IPKTVEIKSVTHVLEEKGVNLKLTVTDTPGFGDQINNKNCWDPVLGYINRQYDIYLNEEISINRRMKIPDNRVHCCLYFIAPTGHRLKPLDILVMKHLDKCVNVIPVIAKADTLTLEEREAFKKRIREDVQLNNLNIYPIMHSNLTEEEIKFNNKVKEQIPFAVVGSDRYVSVGSKNVLGRKTKWGIIEVENRAHCEFPLLRDLLIKTHMEDMIEVTKAIHYENYRRLKLAEKMNQGS 1456
K VD GYVG DSI EQ+R ++K+GFEFN+MVVG SGLGKSTLINTLFK++ SR S P + E IPKT+EIKS+TH +EEKGV +KLTV DTPGFGD INN+NCW P++ +IN QY+ YL EE++INR+ +IPD RVHCCLYFI TGH L+PLDI MK L K VN++PVIAKADTLTLEER FK+RI D+ N +++YP + E+ N K +E IPFAVVGSD V K +LGRKTKWG IEVEN HCEF LRDLLI+THM+++ ++T +IH+E YR +++N+GS
Sbjct: 271 KAPVDFGYVGIDSILEQMRRKAMKQGFEFNIMVVGQSGLGKSTLINTLFKSKISRKSVQPTSEERIPKTIEIKSITHDIEEKGVRMKLTVIDTPGFGDHINNENCWQPIMKFINDQYEKYLQEEVNINRKKRIPDTRVHCCLYFIPATGHSLRPLDIEFMKRLSKVVNIVPVIAKADTLTLEERVHFKQRITADLLSNGIDVYPQKEFDEDSEDRLVNEKFREMIPFAVVGSDHEYQVNGKRILGRKTKWGTIEVENTTHCEFAYLRDLLIRTHMQNIKDITSSIHFEAYR----VKRLNEGS 569 The following BLAST results are available for this feature:
BLAST of TCONS_00062836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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