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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062825 ID=TCONS_00062825|Name=TCONS_00062825|organism=Clytia hemisphaerica|type=transcript|length=3358bpRun BLAST on NCBI protein sequence of TCONS_00062825-protein >TCONS_00062825-protein ID=TCONS_00062825-protein|Name=TCONS_00062825-protein|organism=Clytia hemisphaerica|type=polypeptide|length=743bp MSSKYSPPSSSDCQTNRFGEREDLETSGELDNPSFEGIEYDSFAQYQPEDRun BLAST on NCBI transcript from alignment at scaffold_372:122222..147273- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062825 ID=TCONS_00062825|Name=TCONS_00062825|organism=Clytia hemisphaerica|type=transcript|length=25052bp|location=Sequence derived from alignment at scaffold_372:122222..147273- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_372:122222..147273- >TCONS_00062825 ID=TCONS_00062825|Name=TCONS_00062825|organism=Clytia hemisphaerica|type=CDS|length=44640bp|location=Sequence derived from alignment at scaffold_372:122222..147273- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062825 vs. Swiss-Prot (Human)
Match: TMC5 (Transmembrane channel-like protein 5 OS=Homo sapiens GN=TMC5 PE=2 SV=3) HSP 1 Score: 256.914 bits (655), Expect = 5.724e-71 Identity = 175/524 (33.40%), Postives = 279/524 (53.24%), Query Frame = 2
Query: 692 IRYMTTTLQHKRSVRQRV---KGKNEERPLSGWENFK----LERAMRYTKFKNNVKESFTQFTIWKGHMKEIEGLFGTGVLSYFTFLRWLLYINLIVSLLTLCFLFVPQMIYEQSARILPSSDFTGIDLLTGEGYFNHTELYYGTYTDKAIN-----GRYNMRYAYLLVGGGYFLICIIVLVKSMASSYNQNFI----ISGGDNVAPFSSKVFCAWDYGICNKETARIKMKSFAQDMLETLGSKRGKFKTDCFSFCLVIFLRVLMN-MITMALLFGSAFLIYYVSDMSVEESFESNHVEHGIKGLLPAITMSVINLIVPSGFRLIASIENYSNPKYELTINLLRTITLKLASLXXXXXXXXXRLSTINREVRQEKCWENFIGQAFYKLAVIDFIAVLLATFFEEFIRNIVAKK-CCSKHLPGFDISKNVLNLIYCQGICWLGTFYCPLLPFINVLKLFITFYVKKVSVVRNCRPSTRPFKASKXXXXXXXXXXXXXXXXXVVIGYIMMDDETLKPSTICGPFRG 2209
IR T++ KR++R+ V K K R L + + RA Y + KN++ E ++W+ +K I G FGT VLSYF FLRWLL N+ +L F+ +PQ + + FTG++ TG GYF T +YYG YT+ I YNM+ AY+ G C L+ SMA + NFI SGG + +FC WD+ + +++ ++K K+ + ++ E L R + F+ L F ++ +++ + +YY+++ ++E F H G LLP + +S INL VP + + +E Y P++E+ + L+R I LK++ + + L+T+ + E+CWE IGQ Y+L ++DF+ L+ +F EF+R I+ + S L FDI++NVL LIY Q + W+G F+CPLLPFI ++ LFI FY K +S++ N +P ++ ++AS+M+ +F+ LL V+ + + LKPS CGPFRG
Sbjct: 369 IRNQPRTMEEKRNLRKIVDKEKSKQTHRILQLNCCIQCLNSISRA--YRRSKNSLSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSFILNFSFIIIPQFTVAKKNTL----QFTGLEFFTGVGYFRDTVMYYGFYTNSTIQHGNSGASYNMQLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHIYSGG-----ITKLIFC-WDFTVTHEKAVKLKQKNLSTEIRENLSELRQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAAVYYLAEYNLE--FLKTHSNPGAVLLLPFV-VSCINLAVPCIYSMFRLVERYEMPRHEVYVLLIRNIFLKISIIGILCYYW---LNTV--ALSGEECWETLIGQDIYRLLLMDFVFSLVNSFLGEFLRRIIGMQLITSLGLQEFDIARNVLELIYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSKNISLMMNFQPPSKAWRASQMMTFFIFLLFFPSFTG--VLCTLAITIWRLKPSADCGPFRG 870 The following BLAST results are available for this feature:
BLAST of TCONS_00062825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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