TCONS_00062817 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062817
Unique NameTCONS_00062817
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length949

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062817 ID=TCONS_00062817|Name=TCONS_00062817|organism=Clytia hemisphaerica|type=transcript|length=949bp
AcgaaactttttaaaagaaatgacAAATTTTTTCACTCTCTCTTTAGATC
ACaaataatgaaaatacaaaatttacaaaatgtgAAAGATATGTGATGGC
AACATCCATGGCAAAGAAATAAAGGATGGATAGACAAACGGCAAAATATG
GTGCTCTAATTTGGGATGGAAATATATATCATGAAATTGAAGATCAGTCA
GGACAAAATTACACTTTTCATGAAGTGGACGACTTGATAATTGAAgacaa
tttcaagaaatttgaaGAACTTCTGGAACACAATCCACATTTGATCAATT
CGTTGCgaacaaaaagaaataaaactaCTTTATTAATGGAGTCCGCATGG
TCCAGAACATGGGCTGAAACTTTTCCAAAACTGGCTGAATATAATCAAGA
TATATCAGTTGTTGGTATCTATGATCGAAATATAATCCATCGCATTGTAA
TACATGGTGCAGATGATGAAGCTCTTACGATGTTAACAACATTATCAAAA
CACCAAAACATCAAAGATCCATCCATCATTAATGCTGTCGACTCAGTACG
CCAAGACACGCCCCTGCACATGGCGGCATATTTCAATAAACTAAAAACTT
TAGAgtatttggttgattttgatgCAGATTTGACTTTACGTAACAATAAA
GGTGAAAAACCTGGTGAACATTTTAAATGCAGCGAGgacacaaaaaaatt
gataaaatctcTTGGGAAATGACACAGCAGGACTTGAACACAGCGAACGA
TAAACTTGAGAAGTATCTCAGAATCATTACGAGCCCTGTTTTCGTGTTAA
CTGTACTTTTACGCATCCAATTTAActttttaatactttttaactttttt
agttttaaggctaaaaacgttcttaaaatgttcttatcatcATCATTTgg
gagtatttttgtgcaatttctgaagaaatttggtgtttttagaGTCCTG
Run BLAST on NCBI

transcript from alignment at scaffold_372:119136..121571-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062817 ID=TCONS_00062817|Name=TCONS_00062817|organism=Clytia hemisphaerica|type=transcript|length=2436bp|location=Sequence derived from alignment at scaffold_372:119136..121571- (Clytia hemisphaerica)
ACGAAACTTTTTAAAAGAAATGACAAATTTTTTCACTCTCTCTTTAGATC
ACAAATAATGAAAATACAAAATTTACAAAATGTGAAAGATATGTGATGGC
AACATCCATGGCAAAGAAATAAAGGATGGATAGACAAACGGCAAAATATG
GTGCTCTGTAAGAATTATCCCTTCGAAAACCAATCCAACCAAAACCAAAA
GAAGTCCCTTTTTTAACTCAGGTTTCCAGGCCTCAAATAGATGTAAAAAT
TTAGAAATGTTCTTTGAAGAGTTTTAAAATTGGCATTATTGTTTCATGCA
TCCACTATTTCACTTTCATTTACAGAATTTGGGATGGAAATATATATCAT
GAAATTGAAGATCAGTCAGGACAAAATTACACTTTTCATGGTCAGTAAAA
TACTCTCTTGTTTTATAAGAACCAGTAAATTTTTGTTGAGGCTCAGTTGC
TTTAGTATTTTTGGCACTTTGAGCCTCAAATTGTTTATATCCTGTTCTTA
TTTAGGCTAGGATTGACATATTTTAAGCAACAAACCAGAATTTTTCGGCT
TAAGCACCGAAATTGCATGAAATTTAAGAATTATAGGGTCAGCATAGTTC
TTAGTCTATTTGACAATTTTGAGCCTCATTGTTGACAATGACAAAAATGG
AAAATTCAATTGACGGATTCAAAGGACTTATCATTTCAAGGAATCGGGAA
AACAAATTTGTTCGAGTCAAGGAAATTTCGATTTATGCAGTAAGGATTAC
AAGGAATTTTTAACTGAGAGGACCAGAAAGTTTGTTTGAGTGTTTTCTTG
AATAACGTTTTTTTAGAAGTGGACGACTTGATAATTGAAGACAATTTCAA
GAAATTTGAAGAACTTCTGGAACACAATCCACATTTGATCAATTCGTTGC
GAACAAAAAGAAATAAAACTACTTTATTAATGGAGTCCGCATGGTCCAGA
ACATGGGCTGAAACTTTTCCAAAACTGGCTGGTAGGTTATTTGACACCAA
GATGCAGAAATTTTTATCCGACACGCCATAAAGCTCTGAAGATCGGGAAA
ATTTTTAACATCTAGAATATTTAAATTACGGAATTTTGCCAGACCGCGTC
AAGGAATCCGCAGCGAGAGGCATGAACCCCAGCCCTCGTTTTCGGCGCGA
TTGGTGGGTCCAACCGAAATTTTTTCAAGTTTACGCGCAAGGGTAGTTAC
ACCAAACTGGGGATGCGACACATCAAAGGTTGAATATGATTCCTCTCCGA
TGGATATATTGGCCCGCTCCTTTAGAGCTTTATCTTGGTCAATCAACTAT
CTGTGTGATGGAATTTTGATGTACTGATATCACATCCTTTTATTTGAACC
ACAATGTTTTATTACTTTCATTTTTGAAATTGTCCGTTGTTAAATGGGTT
ACTGGGTTAGTTATGCTGAAGACCTGTACTTCGGGAAGTTGTTTTATAGC
CGTCCAAGTACTTTTCTACAAGATCTTGGTAAGACCCAACAGGAATTGAA
CTCTTATTGTCACCGTAGCCAAATACTTCCTTTACACTGTTGCTCTCTCT
TACCATGAATAGTATTTCCCACGGCCTTTTTTTTTAAATACGGTTGACAC
TGTGTTATTCGACGTTCTACTATTCGATACGCTTCAATAATATTAAAAGT
CAACGTCAACAAGAAACTCTCATAAACGACATTCTACTATTCGAAGCGCT
CCCTTATTCGACAAAAAGTCTTTTCCCCTGGAAAATCGAATTAGAGAGCA
TCAACTATACGACATTTTTAGACAATCAGTCGCACACAGGACCTATGATT
TTCTGCACCGTAACCAAATGTTCTAACTTTCGCTCTAACTTTGAATCACA
GCTGTTAATATTCTTCTTTACCAGAATATAATCAAGATATATCAGTTGTT
GGTATCTATGATCGAAATATAATCCATCGCATTGTAATACATGGTGCAGA
TGATGAAGCTCTTACGATGTTAACAACATTATCAAAACACCAAAACATCA
AAGATCCATCCATCATTAATGCTGTCGACTCAGTACGCCAAGACACGCCC
CTGCACATGGCGGCATATTTCAATAAACTAAAAACTTTAGAGTATTTGGT
TGATTTTGATGCAGATTTGACTTTACGTAACAATAAAGGTGAAAAACCTG
GTGAACATTTTAAATGCAGCGAGGACACAAAAAAATTGATAAAATCTCTT
GGGAAATGACACAGCAGGACTTGAACACAGCGAACGATAAACTTGAGAAG
TATCTCAGAATCATTACGAGCCCTGTTTTCGTGTTAACTGTACTTTTACG
CATCCAATTTAACTTTTTAATACTTTTTAACTTTTTTAGTTTTAAGGCTA
AAAACGTTCTTAAAATGTTCTTATCATCATCATTTGGGAGTATTTTTGTG
CAATTTCTGAAGAAATTTGGTGTTTTTAGAGTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039354XLOC_039354Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062817-exon-scaffold_372-1575043694:121415..121571TCONS_00062817-exon-scaffold_372-1575043694:121415..121571Clytia hemisphaericaexon
TCONS_00062817-exon-scaffold_372-1575043694:121182..121246TCONS_00062817-exon-scaffold_372-1575043694:121182..121246Clytia hemisphaericaexon
TCONS_00062817-exon-scaffold_372-1575043694:120591..120755TCONS_00062817-exon-scaffold_372-1575043694:120591..120755Clytia hemisphaericaexon
TCONS_00062817-exon-scaffold_372-1575043694:119136..119697TCONS_00062817-exon-scaffold_372-1575043694:119136..119697Clytia hemisphaericaexon
TCONS_00062817-exon-scaffold_372-1510915933:121415..121571TCONS_00062817-exon-scaffold_372-1510915933:121415..121571Clytia hemisphaericaexon
TCONS_00062817-exon-scaffold_372-1510915933:121182..121246TCONS_00062817-exon-scaffold_372-1510915933:121182..121246Clytia hemisphaericaexon
TCONS_00062817-exon-scaffold_372-1510915933:120591..120755TCONS_00062817-exon-scaffold_372-1510915933:120591..120755Clytia hemisphaericaexon
TCONS_00062817-exon-scaffold_372-1510915933:119136..119697TCONS_00062817-exon-scaffold_372-1510915933:119136..119697Clytia hemisphaericaexon
TCONS_00062817-exon-scaffold_372-1491911889:121415..121571TCONS_00062817-exon-scaffold_372-1491911889:121415..121571Clytia hemisphaericaexon
TCONS_00062817-exon-scaffold_372-1491911889:121182..121246TCONS_00062817-exon-scaffold_372-1491911889:121182..121246Clytia hemisphaericaexon
TCONS_00062817-exon-scaffold_372-1491911889:120591..120755TCONS_00062817-exon-scaffold_372-1491911889:120591..120755Clytia hemisphaericaexon
TCONS_00062817-exon-scaffold_372-1491911889:119136..119697TCONS_00062817-exon-scaffold_372-1491911889:119136..119697Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_372supercontigscaffold_372:119136..121571 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.71704	1.53194	0.953669	1.17789	2.35158	1.44204	2.53523	2.78119	3.5182	2.40921	3.55814	3.2034	5.7561	6.84648	11.7753	14.2059	3.72089	5.9462	4.04771	4.60275	2.56797	2.97825	4.50585	4.10845	4.46242	3.67361	4.30498	3.42763	2.7744	2.70189
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062817 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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