|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062812 ID=TCONS_00062812|Name=TCONS_00062812|organism=Clytia hemisphaerica|type=transcript|length=708bp
TTTAGAGCGTAAAATTGACTGAAAATTGATCTCGTTAAGTCATTTGTACG
GAATATATGCTGTTCTTTACCAGGTTCATTTAGTTTGCTTACTACTCCTC
TTCGTCATTGACGTCAGTGACGGCCGACATGAAATGAGCCGACATTGTCT
TACCAAAGGACATCGTGGTTCCAAATCTTACACACTGACATTATGTTCGT
ACTGTGCAGTAACTTATGACCATGGGGTTAACGTtttcccACGAAGGACT
GTTGAATTTGAATGTAAAGAAGACCAAAATCTTCATGGTACTTGTCTTAG
TGGTGAAGGCTATTGTCTCCAGAAAAGTGTTGTTATTCCTCTTCGTAAGA
CAAAGCCTGATGGAAGCACAGAAGATAAGGATTATGAAATGATGACTGCA
TGTCAATGTGAATGTGGAAGCGAATCTTATTTGGCTAATTTTATAAAACA
ATAGAACAATTTTGCAGGGATACAGTATATTTGTCAGTAGTTATTTACTT
ACTTAATGAAATAGTCAGATcatcataatcgatgacgtcataaaaactaa
aaattgaatttctcaagttTGATTATCCAatcgtcttcaaactttcacca
aagatgtatcggATGTATCTCACTAAGTTCGATcatttgaagataaaaaa
ttcgaaattctgattacgtcagcaaaaaatagggtttttctttttttccc
aaTTCCTG Run BLAST on NCBI transcript from alignment at scaffold_372:107549..109972- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062812 ID=TCONS_00062812|Name=TCONS_00062812|organism=Clytia hemisphaerica|type=transcript|length=2424bp|location=Sequence derived from alignment at scaffold_372:107549..109972- (Clytia hemisphaerica)
TTTAGAGCGTAAAATTGACTGAAAATTGATCTCGTTAAGTCATTTGTACG
GAATATATGCTGTTCTTTACCAGGTGACGGGTTTCTCTTTGAAAGTGACT
AGACGTTTTTTATAAGAACAAACAATATAAGAACATAAAGCTTTTGATCT
GGGGTAATTCAAAAACCTCAGTAAAAGCATGGATTTATCATAGAACTCTG
GATACACAACGAGCTAGTTTTTTCATCGATTTCTCATGTTCTAGCCTTGT
CCGCAGTAATGAGATTATTGTTCACCCTCCTCCATTCACTAATAATTTTT
CGTAAATTTTTTTTATTGCATTTTTCATCAAAACACAGCTATACAATTCC
CAAATGAGACTTAAAGATCTCTCAAGAGAGTCAAATGCATCAAAGATTTT
CAAATCACTATGAAGCCAAGATACTCCAGTCTAACATATGTCAATCCTAG
CTCTTCCCAGGAAAAAATTGGAAAGATATTGCCAACCTTATTTTCAGCGT
TATTCTAGGCTTTTTACTCAATTTTTCTTGTTTGATGAAGTTTTTTTCAC
ATTTAATTTCATAAATGTATTCGTTAAGCTTTCTTGCTTTCATTTTCAAA
GTTGCATCGGGTAAATATACAAAAACAAGAGGTTACAGGACTTTTTAGAA
ATGGGATTATTAATCATTTTTCAAAATCAGGGACCTTCGAGCCGCCATGA
CAGTTGTCCTTAGCGGACAAAGCTAGAACATTGATTGTTTTCTGAAAGAA
TGGAAATACAATGGTCGCTCTCCACCGTTTTATTTGATGTTTATCCAGAG
CTCTATGATAAATCCACGGTAAAAGTTTGCGAGGTGACGGTTGTATCCAA
GCCAAAAATCGAAAATCGACCCTTTGAGAGAAAAGTTTTTTTCGAGACCC
TTTGAGATTTTTAGTGATTATTCAGACTCTTTGAGAGACTAATCCATGAA
ATTGTACCTCTTTGAAGGAAGTTTTGAGGTATGAAACGTGGTACGCTTAT
GACTCGCACATACCCGTAAATTTTTTTGCCTCAATACCAACCCCCACCGG
GGTAAAAGCCTAATATCTCTTTTCTTTCTAGGTTCATTTAGTTTGCTTAC
TACTCCTCTTCGTCATTGACGTCAGTGACGGCCGACATGAAATGAGCCGA
CATTGTCTTACCAAAGGACATCGTGGTTCCAAATCTTACACACTGACATT
ATGTTCGTACTGTGCAGTAACTTATGACCATGGGGTTAACGTGTAAGTTA
CAATGAGATACATCCGACTTTCTCCTAAATTCGAACCTATATTATTCAAA
TATTTCTATTTCAGTTTTCGCGTACTAAACTATTAGTCCCCTCAGCTAAG
TGGTTTAAATTACTCTCTGTATATCGAAACTTTCTGTAATTCGAAGAAAG
TTTTTTAGCCCTTGATGATCGATTATATCCTATGTGGGATTGAAAATTGC
GCAGATCGCGTGAAGACAGAAAATAATATTAACCGCCAAATATCGAAAGA
TTAATAACAGGAAAACAAAGGTAGCATTAGATTCAATATTATATATGTGG
TAGTTGGTTTCCTTTAACCAATGTTGTCTCTTTAAATGCTTTGTTTTTAA
AAAAGAGTGATATTGTTTGCTTACTCATCAATTTTAATTTACAAGCTATT
CTCCACCGGTGTTGCAGGCGTTGTTGTTTGCAATTTTTAAAGGTTTTGTT
TTTAAATAAGAACGCAAGCTTTTTCACATTGGATTAACAAGGATGTGGAG
CAAGATTGATCAGAAAGAGAAAAAGAAAAACTATTTTTTGCTTACATCAT
CATAATATAACAATAGGCAGACATGTCCTGATATGAAATATGTGTCTGAT
ATGACTGGAACACTTATGTAAAAATAAAACCTTTAAGGGTCTCTTTAGTA
GTAAGCCGGCTTCTGGAATAATTCTTTAACGATTTTACATTTTTTTTCAG
TTTCCCACGAAGGACTGTTGAATTTGAATGTAAAGAAGACCAAAATCTTC
ATGGTACTTGTCTTAGTGGTGAAGGCTATTGTCTCCAGAAAAGTGTTGTT
ATTCCTCTTCGTAAGACAAAGCCTGATGGAAGCACAGAAGATAAGGATTA
TGAAATGATGACTGCATGTCAATGTGAATGTGGAAGCGAATCTTATTTGG
CTAATTTTATAAAACAATAGAACAATTTTGCAGGGATACAGTATATTTGT
CAGTAGTTATTTACTTACTTAATGAAATAGTCAGATCATCATAATCGATG
ACGTCATAAAAACTAAAAATTGAATTTCTCAAGTTTGATTATCCAATCGT
CTTCAAACTTTCACCAAAGATGTATCGGATGTATCTCACTAAGTTCGATC
ATTTGAAGATAAAAAATTCGAAATTCTGATTACGTCAGCAAAAAATAGGG
TTTTTCTTTTTTTCCCAATTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062812-exon-scaffold_372-1575043694:109900..109972 | TCONS_00062812-exon-scaffold_372-1575043694:109900..109972 | Clytia hemisphaerica | exon |
| TCONS_00062812-exon-scaffold_372-1575043694:108731..108891 | TCONS_00062812-exon-scaffold_372-1575043694:108731..108891 | Clytia hemisphaerica | exon |
| TCONS_00062812-exon-scaffold_372-1575043694:107549..108022 | TCONS_00062812-exon-scaffold_372-1575043694:107549..108022 | Clytia hemisphaerica | exon |
| TCONS_00062812-exon-scaffold_372-1510915933:109900..109972 | TCONS_00062812-exon-scaffold_372-1510915933:109900..109972 | Clytia hemisphaerica | exon |
| TCONS_00062812-exon-scaffold_372-1510915933:108731..108891 | TCONS_00062812-exon-scaffold_372-1510915933:108731..108891 | Clytia hemisphaerica | exon |
| TCONS_00062812-exon-scaffold_372-1510915933:107549..108022 | TCONS_00062812-exon-scaffold_372-1510915933:107549..108022 | Clytia hemisphaerica | exon |
| TCONS_00062812-exon-scaffold_372-1491911889:109900..109972 | TCONS_00062812-exon-scaffold_372-1491911889:109900..109972 | Clytia hemisphaerica | exon |
| TCONS_00062812-exon-scaffold_372-1491911889:108731..108891 | TCONS_00062812-exon-scaffold_372-1491911889:108731..108891 | Clytia hemisphaerica | exon |
| TCONS_00062812-exon-scaffold_372-1491911889:107549..108022 | TCONS_00062812-exon-scaffold_372-1491911889:107549..108022 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_372 | supercontig | scaffold_372:107549..109972 - |
Blast
The following BLAST results are available for this feature:
|
