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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062800 ID=TCONS_00062800|Name=TCONS_00062800|organism=Clytia hemisphaerica|type=transcript|length=2180bpRun BLAST on NCBI protein sequence of TCONS_00062800-protein >TCONS_00062800-protein ID=TCONS_00062800-protein|Name=TCONS_00062800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp MDQVSFFEWLEQPRQIVLFSSFFMILCFAITKISKLRKHRHHDFRVRDPRRun BLAST on NCBI transcript from alignment at scaffold_372:277161..289075+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062800 ID=TCONS_00062800|Name=TCONS_00062800|organism=Clytia hemisphaerica|type=transcript|length=11915bp|location=Sequence derived from alignment at scaffold_372:277161..289075+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_372:277161..289075+ >TCONS_00062800 ID=TCONS_00062800|Name=TCONS_00062800|organism=Clytia hemisphaerica|type=CDS|length=15066bp|location=Sequence derived from alignment at scaffold_372:277161..289075+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062800 vs. Swiss-Prot (Human)
Match: DGKE (Diacylglycerol kinase epsilon OS=Homo sapiens GN=DGKE PE=1 SV=1) HSP 1 Score: 460.299 bits (1183), Expect = 7.082e-153 Identity = 231/546 (42.31%), Postives = 332/546 (60.81%), Query Frame = 1
Query: 364 VLFSSFFMILCFAITKISKLRKHRHHDFRVRDPRKGHHWVHSDFIIKPTFCNICETTIVRGVFCDTCWVCVHDECEEDGNKRLACKVMSLSTERR---TMKHHWVKGNLALCSACAVCTNPCGVEPKLCDYRCVWCQTTVHEGQCFGQFL--DHCTFGENSKMVLPPFSITLKTVGWKGRRRHVIKEVKAPPF-KDWEPTLVIANPKSGSNQGVKLLRAFRLLLNPAQVIDLSEIPPETALEFCRLLPTTQCRVLVCGGDGTVGWVLDALDKVELPKR----PLIGIHPMGTGNDLARVLGWGVKYVGDEHEIDELLQDFENATRTPFDRWTVNIKNTGLFGKNLPAKNLSMNSYVSLGCDAQVVLNFHKHREHQPSLFTSRIINKLMYFIYGSKDVLEAQCKNLHERVELELDGKKIKLPHLEGIVILNINSWCGGCQIWNNNQFEVDKESSFNDGYLEIAGLYSALHIAKLQVKLAEPIKLGRAKVVKITVHKTKEAKKVPMQLDGEPWEQGSCVITVTHKGQVLMLKKKDDKVCPDIIGSGDK 1971
VL F C + S+ + HR FR + H W +D +PT+C +C I++G FCD C + V + C +KR CK + L + + M HHW++GN+ LCS C VC CG +PKLCDYRC+WCQ TVH+ +C L + C FGE +++PP +T ++ + + EV A K W P +++AN +SG+N G LL FR+LLNP QV D+++ PP AL+ C LLP RVLVCGGDGTVGWVLDA+D +++ + P + + P+GTGNDL+ LGWG Y G E + ++L++ A DRW V + N G + P K +MN+Y S+G DA + LNFH HRE PSLF+SRI+NK +Y YG+KD L +CK+L+++VELELDG+++ LP LEGI++LNI W GGC++W E + +DG LE+ G+Y + H A++QVKLA P ++G+A V++ + + +PMQ+DGEPW QG C +T+THK +ML ++ DI + D+
Sbjct: 30 VLLPVFITFWCS--LQRSRRQLHRRDIFR----KSKHGWRDTDLFSQPTYCCVCAQHILQGAFCDCCGLRVDEGCLRKADKRFQCKEIMLKNDTKVLDAMPHHWIRGNVPLCSYCMVCKQQCGCQPKLCDYRCIWCQKTVHD-ECMKNSLKNEKCDFGEFKNLIIPPSYLT--SINQMRKDKKTDYEVLASKLGKQWTPLIILANSRSGTNMGEGLLGEFRILLNPVQVFDVTKTPPIKALQLCTLLPYYSARVLVCGGDGTVGWVLDAVDDMKIKGQEKYIPQVAVLPLGTGNDLSNTLGWGTGYAG-EIPVAQVLRNVMEADGIKLDRWKVQVTNKGYYNLRKP-KEFTMNNYFSVGPDALMALNFHAHREKAPSLFSSRILNKAVYLFYGTKDCLVQECKDLNKKVELELDGERVALPSLEGIIVLNIGYWGGGCRLWEGMGDETYPLARHDDGLLEVVGVYGSFHCAQIQVKLANPFRIGQAHTVRLIL----KCSMMPMQVDGEPWAQGPCTVTITHKTHAMMLYFSGEQTDDDISSTSDQ 560 The following BLAST results are available for this feature:
BLAST of TCONS_00062800 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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