TCONS_00062791 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062791
Unique NameTCONS_00062791
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062791 ID=TCONS_00062791|Name=TCONS_00062791|organism=Clytia hemisphaerica|type=transcript|length=2240bp
GTCAGTTTTAAATTTGTGCCTTTTCAAATTAGTGTCTCTCCGTAAGATCC
TTACTTAATTCTAacgattttttatgtttaattaGGTAAAAGTATGATTT
TGAATAGAAGAAATGATACATAAGAAAACTGACTAAAAGACCCTAAAGAA
TACAAAATGGTATCGCAAAATGGATTTTACGATTACTCGGCAGCGGCCAG
AGAAAGCGATTTGGTGACATTGAAACAATGTTCAAAGAAAGAAGCCAATC
GACGAGATGAAGATGGAATGACGCCAGTCCATTGGGCTTCACTTTACGGA
AATTTCGAAGCTTTGAAAATACTCATCAATGTTGGTGGGAGTCCTGACAA
ACAAAACAACGAAGGAGCGTCATCACTCCATTTAGCAGCAGGTAATGGTC
ATTTACCTTGTCTAGTATACTTGACCAACTTTGGTGGAAATGTTCACGCC
TTAAATGACAACGGTGGTTCACCTATGCACGAGGCTGCTATGAAAGGCCA
ATTAGAGTGTGTTCGACATCTAGAAGCTATAGTTACACATCAGGTTTCAC
AAGATCGCAGTAAAGTTGAAAAGATGCAAACCAAGGCTAAAAAAGACCTT
GAAAAACGAAATAAAGGTCGTGAAAAACTATTGAAAAACATGGACAAATC
ATATGATCGAAAAGTCGATAAACAACGTAAATATTTCGGTGTACCCCTGT
CAGCAAACCCCAACAACCCGTACAATTTAGATGGGACCGATAAAATGAGT
TATTCACAGTTAACCGGGATGACTAACGGACACCATCGAATGAATCGAGG
AAACCCTGAGGAAATCGCTGAATACGATAGTAACGTAGATAACGATTCAA
TTGATTCATTTCAACGAGTCGAGGAAGAATTCTTAACACGAAACTCGCAA
ATTTCCGATGATATCGTTTTCGAACGGCCCGAAAAATCGTCAATTAGGAC
GGAACAGACGGACCTTTCCGGAGGTTCTTCATCTACGGAAATCTCTATAA
AACAACCGGGTATGCTGGCTAGCCTCAATTCCTTACATACTTCAAGAAAC
GGGTCCTATACTCATTCGTACAACGGAGGCGGTTATATGAACGGTTATTC
CCAAACTAACGGCTACCCCCGAAAGCCGTCTTCAACTTCCGGGCTACTAG
AAAACGGAAAGAAGGCTAATAAGGGGTTTGGAAGCTCGCAACATTTAGGA
GCATCCATGGCGAGCTCAAAGTCGCTCCCGCCTTCTAAGCGCAATGGTAG
ACCGGTTGGGTACCGTGAGGTCCATATGGGACCtttatatacttttttac
aTTCACTCGGTATGGACGAATTCAGAGATGTGTTTTTGCGTGAGAAAATT
GACCTGAGTGCGTGTTTACTCTGTGATGAGAACGATTTGCGGGAGATCGG
GCTCCCGCTCGGCGATCGTAAGAAATTAATGGACGCTATCAATAAACGGA
ATCAGATCATGAAAGAAGCCAGCGAAACGAAAAAAGAGCTGTTTGATTCT
GCAGTGTGACGAAAATAAAACAGTACAGAGAAGTGAAGAGTCTTAAATTT
CTTTGTGATAAGTCGAGTGGGTGAATCTATTGAAATGAATAGACCAATGA
AGAtggaaaatgtttcaaattttaaatactTTCGGTAACGATTTTAACCA
GAGCTGGTGTTTTCGTCAGGCCAGATCACACACATGTAATCCAAGTGACT
TTTTAGGATATATTCAAAACTATACTATACCATAATAATTTTAAGTGata
taactttttttgaaaaccattgtggtacaaataaagaaaatttcggTTCT
TAGAAATGGTTGAATGGTTTACATATTTGGCTTAATAGCCAATGATCAAG
GAAAGATTAAGCGCGTGGAGCAGAAGAATGAAACTCTCGAGTGTATAGAA
TGAGAGACATTTCTTAAACACGCTATCGAGGAGTACGCAGAAATTTAATT
GGATAAACATTACATTAAATGCATTGATGCCATGATTTTAGGATGGCATC
TTCAAAATATATTGTTAATATGTATGatattaaaagattttgttcagaaa
ttatttaaaatatatAGCTTGAGACGAACAATAATTGaattaaattgaat
taaaaaataatttaattgaaGATATTTGAAGATTGACATTGCGAATGTCG
TTTTTGTAATCTTTTAAaatctgactgaagactgcctgaaacggcacgaa
actaccagtatcggaaaataaatttgtctgTATTCTTGAC
Run BLAST on NCBI

protein sequence of TCONS_00062791-protein

>TCONS_00062791-protein ID=TCONS_00062791-protein|Name=TCONS_00062791-protein|organism=Clytia hemisphaerica|type=polypeptide|length=450bp
MVSQNGFYDYSAAARESDLVTLKQCSKKEANRRDEDGMTPVHWASLYGNF
EALKILINVGGSPDKQNNEGASSLHLAAGNGHLPCLVYLTNFGGNVHALN
DNGGSPMHEAAMKGQLECVRHLEAIVTHQVSQDRSKVEKMQTKAKKDLEK
RNKGREKLLKNMDKSYDRKVDKQRKYFGVPLSANPNNPYNLDGTDKMSYS
QLTGMTNGHHRMNRGNPEEIAEYDSNVDNDSIDSFQRVEEEFLTRNSQIS
DDIVFERPEKSSIRTEQTDLSGGSSSTEISIKQPGMLASLNSLHTSRNGS
YTHSYNGGGYMNGYSQTNGYPRKPSSTSGLLENGKKANKGFGSSQHLGAS
MASSKSLPPSKRNGRPVGYREVHMGPLYTFLHSLGMDEFRDVFLREKIDL
SACLLCDENDLREIGLPLGDRKKLMDAINKRNQIMKEASETKKELFDSAV
Run BLAST on NCBI

transcript from alignment at scaffold_372:54801..58823+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062791 ID=TCONS_00062791|Name=TCONS_00062791|organism=Clytia hemisphaerica|type=transcript|length=4023bp|location=Sequence derived from alignment at scaffold_372:54801..58823+ (Clytia hemisphaerica)
GTCAGTTTTAAATTTGTGCCTTTTCAAATTAGTGTCTCTCCGTAAGATCC
TTACTTAATTCTAacgattttttatgtttaattaGGTAAAAGTATGATTT
TGAATAGAAGAAATGATACATAAGAAAACTGACTAAAAGACCCTAAAGAA
TACAAAATGGTATCGCAAAATGGATTTTACGATTACTCGGCAGCGGCCAG
AGAAAGCGATTTGGTGACATTGAAACAATGTTCAAAGAAAGAAGCCAATC
GACGAGATGAAGATGGTAGGTgatacaacgttgttttaacgttataTAAC
GAGCAGGTCGTTTTGATTCAAACCATCTTGGAACACGTTAACAGGTTTTT
AGAAGAACAGATTATATATGAACATAACGCTTCGATGGCCATATTATTAA
GAGcaagttgagaatattttaagccTTTGCGGAGTCTAAAACACTCGATT
CCTTAGGAAATTGGACGAAAATACACGAAATAGTGAACATAACTACATGT
TAAAAACATCTTTAGGTtgcaaactcaaaaagttaagaacatccgaaagc
tttTGGGTAtacttatgaaaaaacgtgtatcataaGAATCAGAAGATTTT
TGCTGAGTCTCAAAGTTTGTATGTTGTCTATATATTTGGACGAATCATTT
ATAGCTCTACACACTATTTTGTTCTTTGTATTCCCAGGAATGACGCCAGT
CCATTGGGCTTCACTTTACGGAAATTTCGAAGCTTTGAAAATACTCATCA
ATGTTGGGTAAGTGCCTATAATAAAGAAGGTTTCATTTACAATAAAACTT
TGACCTGCTTTGACATAACCACATTGTATAAAGATCGCTGTATTTGGACC
GGGGTAGTTCCCGCAGAGAAGCCTTTGTAGTAAAATTCtgcctaacgaca
aacggcgctacatcactaTTGTACAAGCGAAGGTAGTTCTAGCGCTGTCG
ATGCGGATAACACTCTCAAAAAGATCTCAACCAAAATAATTTGCTTGGCC
AGGATTGGGAAACTGCCTCCAGGGTCTATATAAAGCTAAGTGGTTattac
cattgagtttcaagtccgaagggctagagttgaatctctaacctttctca
ggcaagaaaaagtgaagccacttatttcccattcagaaCGCGCCGCAacg
gttcttttgtttttgaggactgtatttcttaaaatctagcgatagatttt
acttttgtttcaatctggcgtttgtgtaaaaaccacgcacAGGCGTTCTG
GATGTGAAATGAAGTAGCttcaggagtctcgagtctagcccttcgggctt
ggaagtcaatggttaTTATCATCATTACATATATTATAACAATAgtgttc
agtttgaggtcgttgttgttattttctgctcgcgtagtttgattattcgc
ccgatagtgtcatttgggcccgacgcgaagcggaAATGACGTTATTGCCC
TATACCCGGCCCGTTAATGACAATTTgagtcacaaaacctttcaataccg
cccgccgattgaacctttaatggctaacttaatgaccgctatatggataa
taatatcTAATTACGCCTAATCTTTTCACAGTGGGAGTCCTGACAAACAA
AACAACGAAGGAGCGTCATCACTCCATTTAGCAGCAGGTAATGGTCATTT
ACCTTGTCTAGTATACTTGACCAACTTTGGTGGAAATGTTCACGCCTTAA
ATGACAACGGTGGTTCACCTATGCACGAGGCTGCTATGAAAGGCCAATTA
GAGTGTGTTCGACATCTAGAAGCTATAGTTACACATCAGGTGAGTGGAGA
AAGATTTCTAAACCAAGCAGCATCAAAAGCTTATTTGGTCAAAAATCGCT
AAAACTATATTATGCCCTTTGCCAGCTAACCACGAAACCTCCCTTTTCGA
TTTTCCTTGAAAGAGCATTTCGTCAGTAAGGCATAAATAGACACTAGAAA
CCACTGATAATCTATACTTTTTCATGGTGAGGCTTAGATGGAAGGCCAAT
TAGATAGAATGTGTTCGACATCTAGTTTCACACATCAGGTAAGTTGGGAA
TTTTGTAATGGTAATAATCAAACagtaatatcaaaataaatttcctgGAA
CTTTCCCAGATAGTATTTAAAGTTACACCTTAGTGTGACTTCAGAGTTCA
AGTCTTTCTCGGATATCTACGACCTGACGTTTTACGTACTCGGTCCATGA
AAGTAACACTTATTTAAAAAGAGGTACATATCACCGCATTATTTATTTTC
TCCCATNGCTgcgaacgttagataaacgttgaaacaacattgtgtacATA
TCACCGCATTATTTATTTCCTCACAGGTTTCACAAGATCGCAGTAAAGTT
GAAAAGATGCAAACCAAGGCTAAAAAAGACCTTGAAAAACGAAATAAAGG
TCGTGAAAAACTATTGAAAAACATGGACAAATCATATGATCGAAAAGTCG
ATAAACAACGTAAATATTTCGGTGTACCCCTGTCAGCAAACCCCAACAAC
CCGTACAATTTAGATGGGACCGATAAAATGAGTTATTCACAGTTAACCGG
GATGACTAACGGACACCATCGAATGAATCGAGGAAACCCTGAGGAAATCG
CTGAATACGATAGTAACGTAGATAACGATTCAATTGATTCATTTCAACGA
GTCGAGGAAGAATTCTTAACACGAAACTCGCAAATTTCCGATGATATCGT
TTTCGAACGGCCCGAAAAATCGTCAATTAGGACGGAACAGACGGACCTTT
CCGGAGGTTCTTCATCTACGGAAATCTCTATAAAACAACCGGGTATGCTG
GCTAGCCTCAATTCCTTACATACTTCAAGAAACGGGTCCTATACTCATTC
GTACAACGGAGGCGGTTATATGAACGGTTATTCCCAAACTAACGGCTACC
CCCGAAAGCCGTCTTCAACTTCCGGGCTACTAGAAAACGGAAAGAAGGCT
AATAAGGGGTTTGGAAGCTCGCAACATTTAGGAGCATCCATGGCGAGCTC
AAAGTCGCTCCCGCCTTCTAAGCGCAATGGTAGACCGGTTGGGTACCGTG
AGGTCCATATGGGACCtttatatacttttttacaTTCACTCGGTATGGAC
GAATTCAGAGATGTGTTTTTGCGTGAGAAAATTGACCTGAGTGCGTGTTT
ACTCTGTGATGAGAACGATTTGCGGGAGATCGGGCTCCCGCTCGGCGATC
GTAAGAAATTAATGGACGCTATCAATAAACGGAATCAGATCATGAAAGAA
GCCAGCGAAACGAAAAAAGAGCTGTTTGATTCTGCAGTGTGACGAAAATA
AAACAGTACAGAGAAGTGAAGAGTCTTAAATTTCTTTGTGATAAGTCGAG
TGGGTGAATCTATTGAAATGAATAGACCAATGAAGAtggaaaatgtttca
aattttaaatactTTCGGTAACGATTTTAACCAGAGCTGGTGTTTTCGTC
AGGCCAGATCACACACATGTAATCCAAGTGACTTTTTAGGATATATTCAA
AACTATACTATACCATAATAATTTTAAGTGatataactttttttgaaaac
cattgtggtacaaataaagaaaatttcggTTCTTAGAAATGGTTGAATGG
TTTACATATTTGGCTTAATAGCCAATGATCAAGGAAAGATTAAGCGCGTG
GAGCAGAAGAATGAAACTCTCGAGTGTATAGAATGAGAGACATTTCTTAA
ACACGCTATCGAGGAGTACGCAGAAATTTAATTGGATAAACATTACATTA
AATGCATTGATGCCATGATTTTAGGATGGCATCTTCAAAATATATTGTTA
ATATGTATGatattaaaagattttgttcagaaattatttaaaatatatAG
CTTGAGACGAACAATAATTGaattaaattgaattaaaaaataatttaatt
gaaGATATTTGAAGATTGACATTGCGAATGTCGTTTTTGTAATCTTTTAA
aatctgactgaagactgcctgaaacggcacgaaactaccagtatcggaaa
ataaatttgtctgTATTCTTGAC

Coding sequence (CDS) from alignment at scaffold_372:54801..58823+

>TCONS_00062791 ID=TCONS_00062791|Name=TCONS_00062791|organism=Clytia hemisphaerica|type=CDS|length=5412bp|location=Sequence derived from alignment at scaffold_372:54801..58823+ (Clytia hemisphaerica)
ATGGTATCGCAAAATGGATTTTACGATTACTCGGCAGCGGCCAGAGAAAG
CGATTTGGTGACATTGAAACAATGTTCAAAGAAAGAAGCCAATCGACGAG
ATGAAGATGGAATGACGCCAGTCCATTGGGCTTCACTTTACGGAAATTTC
GAAGCTTTGAAAATACTCATCAATGTTGGTGGGAGTCCTGACAAACAAAA
CAACGAAGGAGCGTCATCACTCCATTTAGCAGCAGGTAATGGTCATTTAC
CTTGTCTAGTATACTTGACCAACTTTGGTGGAAATGTTCACGCCTTAAAT
GACAACGGTGGTTCACCTATGCACGAGGCTGCTATGAAAGGCCAATTAGA
GTGTGTTCGACATCTAGAAGCTATAGTTACACATCAGGTTTCACAAGATC
GCAGTAAAGTTGAAAAGATGCAAACCAAGGCTAAAAAAGACCTTGAAAAA
CGAAATAAAGGTCGTGAAAAACTATTGAAAAACATGGACAAATCATATGA
TCGAAAAGTCGATAAACAACGTAAATATTTCGGTGTACCCCTGTCAGCAA
ACCCCAACAACCCGTACAATTTAGATGGGACCGATAAAATGAGTTATTCA
CAGTTAACCGGGATGACTAACGGACACCATCGAATGAATCGAGGAAACCC
TGAGGAAATCGCTGAATACGATAGTAACGTAGATAACGATTCAATTGATT
CATTTCAACGAGTCGAGGAAGAATTCTTAACACGAAACTCGCAAATTTCC
GATGATATCGTTTTCGAACGGCCCGAAAAATCGTCAATTAGGACGGAACA
GACGGACCTTTCCGGAGGTTCTTCATCTACGGAAATCTCTATAAAACAAC
CGGGTATGCTGGCTAGCCTCAATTCCTTACATACTTCAAGAAACGGGTCC
TATACTCATTCGTACAACGGAGGCGGTTATATGAACGGTTATTCCCAAAC
TAACGGCTACCCCCGAAAGCCGTCTTCAACTTCCGGGCTACTAGAAAACG
GAAAGAAGGCTAATAAGGGGTTTGGAAGCTCGCAACATTTAGGAGCATCC
ATGGCGAGCTCAAAGTCGCTCCCGCCTTCTAAGCGCAATGGTAGACCGGT
TGGGTACCGTGAGGTCCATATGGGACCtttatatacttttttacaTTCAC
TCGGTATGGACGAATTCAGAGATGTGTTTTTGCGTGAGAAAATTGACCTG
AGTGCGTGTTTACTCTGTGATGAGAACGATTTGCGGGAGATCGGGCTCCC
GCTCGGCGATCGTAAGAAATTAATGGACGCTATCAATAAACGGAATCAGA
TCATGAAAGAAGCCAGCGAAACGAAAAAAGAGCTGTTTGATTCTGCAGTG
TGAATGGTATCGCAAAATGGATTTTACGATTACTCGGCAGCGGCCAGAGA
AAGCGATTTGGTGACATTGAAACAATGTTCAAAGAAAGAAGCCAATCGAC
GAGATGAAGATGGAATGACGCCAGTCCATTGGGCTTCACTTTACGGAAAT
TTCGAAGCTTTGAAAATACTCATCAATGTTGGTGGGAGTCCTGACAAACA
AAACAACGAAGGAGCGTCATCACTCCATTTAGCAGCAGGTAATGGTCATT
TACCTTGTCTAGTATACTTGACCAACTTTGGTGGAAATGTTCACGCCTTA
AATGACAACGGTGGTTCACCTATGCACGAGGCTGCTATGAAAGGCCAATT
AGAGTGTGTTCGACATCTAGAAGCTATAGTTACACATCAGGTTTCACAAG
ATCGCAGTAAAGTTGAAAAGATGCAAACCAAGGCTAAAAAAGACCTTGAA
AAACGAAATAAAGGTCGTGAAAAACTATTGAAAAACATGGACAAATCATA
TGATCGAAAAGTCGATAAACAACGTAAATATTTCGGTGTACCCCTGTCAG
CAAACCCCAACAACCCGTACAATTTAGATGGGACCGATAAAATGAGTTAT
TCACAGTTAACCGGGATGACTAACGGACACCATCGAATGAATCGAGGAAA
CCCTGAGGAAATCGCTGAATACGATAGTAACGTAGATAACGATTCAATTG
ATTCATTTCAACGAGTCGAGGAAGAATTCTTAACACGAAACTCGCAAATT
TCCGATGATATCGTTTTCGAACGGCCCGAAAAATCGTCAATTAGGACGGA
ACAGACGGACCTTTCCGGAGGTTCTTCATCTACGGAAATCTCTATAAAAC
AACCGGGTATGCTGGCTAGCCTCAATTCCTTACATACTTCAAGAAACGGG
TCCTATACTCATTCGTACAACGGAGGCGGTTATATGAACGGTTATTCCCA
AACTAACGGCTACCCCCGAAAGCCGTCTTCAACTTCCGGGCTACTAGAAA
ACGGAAAGAAGGCTAATAAGGGGTTTGGAAGCTCGCAACATTTAGGAGCA
TCCATGGCGAGCTCAAAGTCGCTCCCGCCTTCTAAGCGCAATGGTAGACC
GGTTGGGTACCGTGAGGTCCATATGGGACCtttatatacttttttacaTT
CACTCGGTATGGACGAATTCAGAGATGTGTTTTTGCGTGAGAAAATTGAC
CTGAGTGCGTGTTTACTCTGTGATGAGAACGATTTGCGGGAGATCGGGCT
CCCGCTCGGCGATCGTAAGAAATTAATGGACGCTATCAATAAACGGAATC
AGATCATGAAAGAAGCCAGCGAAACGAAAAAAGAGCTGTTTGATTCTGCA
GTGTGAATGGTATCGCAAAATGGATTTTACGATTACTCGGCAGCGGCCAG
AGAAAGCGATTTGGTGACATTGAAACAATGTTCAAAGAAAGAAGCCAATC
GACGAGATGAAGATGGAATGACGCCAGTCCATTGGGCTTCACTTTACGGA
AATTTCGAAGCTTTGAAAATACTCATCAATGTTGGTGGGAGTCCTGACAA
ACAAAACAACGAAGGAGCGTCATCACTCCATTTAGCAGCAGGTAATGGTC
ATTTACCTTGTCTAGTATACTTGACCAACTTTGGTGGAAATGTTCACGCC
TTAAATGACAACGGTGGTTCACCTATGCACGAGGCTGCTATGAAAGGCCA
ATTAGAGTGTGTTCGACATCTAGAAGCTATAGTTACACATCAGGTTTCAC
AAGATCGCAGTAAAGTTGAAAAGATGCAAACCAAGGCTAAAAAAGACCTT
GAAAAACGAAATAAAGGTCGTGAAAAACTATTGAAAAACATGGACAAATC
ATATGATCGAAAAGTCGATAAACAACGTAAATATTTCGGTGTACCCCTGT
CAGCAAACCCCAACAACCCGTACAATTTAGATGGGACCGATAAAATGAGT
TATTCACAGTTAACCGGGATGACTAACGGACACCATCGAATGAATCGAGG
AAACCCTGAGGAAATCGCTGAATACGATAGTAACGTAGATAACGATTCAA
TTGATTCATTTCAACGAGTCGAGGAAGAATTCTTAACACGAAACTCGCAA
ATTTCCGATGATATCGTTTTCGAACGGCCCGAAAAATCGTCAATTAGGAC
GGAACAGACGGACCTTTCCGGAGGTTCTTCATCTACGGAAATCTCTATAA
AACAACCGGGTATGCTGGCTAGCCTCAATTCCTTACATACTTCAAGAAAC
GGGTCCTATACTCATTCGTACAACGGAGGCGGTTATATGAACGGTTATTC
CCAAACTAACGGCTACCCCCGAAAGCCGTCTTCAACTTCCGGGCTACTAG
AAAACGGAAAGAAGGCTAATAAGGGGTTTGGAAGCTCGCAACATTTAGGA
GCATCCATGGCGAGCTCAAAGTCGCTCCCGCCTTCTAAGCGCAATGGTAG
ACCGGTTGGGTACCGTGAGGTCCATATGGGACCtttatatacttttttac
aTTCACTCGGTATGGACGAATTCAGAGATGTGTTTTTGCGTGAGAAAATT
GACCTGAGTGCGTGTTTACTCTGTGATGAGAACGATTTGCGGGAGATCGG
GCTCCCGCTCGGCGATCGTAAGAAATTAATGGACGCTATCAATAAACGGA
ATCAGATCATGAAAGAAGCCAGCGAAACGAAAAAAGAGCTGTTTGATTCT
GCAGTGTGAATGGTATCGCAAAATGGATTTTACGATTACTCGGCAGCGGC
CAGAGAAAGCGATTTGGTGACATTGAAACAATGTTCAAAGAAAGAAGCCA
ATCGACGAGATGAAGATGGAATGACGCCAGTCCATTGGGCTTCACTTTAC
GGAAATTTCGAAGCTTTGAAAATACTCATCAATGTTGGTGGGAGTCCTGA
CAAACAAAACAACGAAGGAGCGTCATCACTCCATTTAGCAGCAGGTAATG
GTCATTTACCTTGTCTAGTATACTTGACCAACTTTGGTGGAAATGTTCAC
GCCTTAAATGACAACGGTGGTTCACCTATGCACGAGGCTGCTATGAAAGG
CCAATTAGAGTGTGTTCGACATCTAGAAGCTATAGTTACACATCAGGTTT
CACAAGATCGCAGTAAAGTTGAAAAGATGCAAACCAAGGCTAAAAAAGAC
CTTGAAAAACGAAATAAAGGTCGTGAAAAACTATTGAAAAACATGGACAA
ATCATATGATCGAAAAGTCGATAAACAACGTAAATATTTCGGTGTACCCC
TGTCAGCAAACCCCAACAACCCGTACAATTTAGATGGGACCGATAAAATG
AGTTATTCACAGTTAACCGGGATGACTAACGGACACCATCGAATGAATCG
AGGAAACCCTGAGGAAATCGCTGAATACGATAGTAACGTAGATAACGATT
CAATTGATTCATTTCAACGAGTCGAGGAAGAATTCTTAACACGAAACTCG
CAAATTTCCGATGATATCGTTTTCGAACGGCCCGAAAAATCGTCAATTAG
GACGGAACAGACGGACCTTTCCGGAGGTTCTTCATCTACGGAAATCTCTA
TAAAACAACCGGGTATGCTGGCTAGCCTCAATTCCTTACATACTTCAAGA
AACGGGTCCTATACTCATTCGTACAACGGAGGCGGTTATATGAACGGTTA
TTCCCAAACTAACGGCTACCCCCGAAAGCCGTCTTCAACTTCCGGGCTAC
TAGAAAACGGAAAGAAGGCTAATAAGGGGTTTGGAAGCTCGCAACATTTA
GGAGCATCCATGGCGAGCTCAAAGTCGCTCCCGCCTTCTAAGCGCAATGG
TAGACCGGTTGGGTACCGTGAGGTCCATATGGGACCtttatatacttttt
tacaTTCACTCGGTATGGACGAATTCAGAGATGTGTTTTTGCGTGAGAAA
ATTGACCTGAGTGCGTGTTTACTCTGTGATGAGAACGATTTGCGGGAGAT
CGGGCTCCCGCTCGGCGATCGTAAGAAATTAATGGACGCTATCAATAAAC
GGAATCAGATCATGAAAGAAGCCAGCGAAACGAAAAAAGAGCTGTTTGAT
TCTGCAGTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039341XLOC_039341Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062791-exon-scaffold_372-1491911889:54801..55065TCONS_00062791-exon-scaffold_372-1491911889:54801..55065Clytia hemisphaericaexon
TCONS_00062791-exon-scaffold_372-1510915933:54801..55065TCONS_00062791-exon-scaffold_372-1510915933:54801..55065Clytia hemisphaericaexon
TCONS_00062791-exon-scaffold_372-1575043694:54801..55065TCONS_00062791-exon-scaffold_372-1575043694:54801..55065Clytia hemisphaericaexon
TCONS_00062791-exon-scaffold_372-1491911889:55488..55557TCONS_00062791-exon-scaffold_372-1491911889:55488..55557Clytia hemisphaericaexon
TCONS_00062791-exon-scaffold_372-1510915933:55488..55557TCONS_00062791-exon-scaffold_372-1510915933:55488..55557Clytia hemisphaericaexon
TCONS_00062791-exon-scaffold_372-1575043694:55488..55557TCONS_00062791-exon-scaffold_372-1575043694:55488..55557Clytia hemisphaericaexon
TCONS_00062791-exon-scaffold_372-1491911889:56382..56589TCONS_00062791-exon-scaffold_372-1491911889:56382..56589Clytia hemisphaericaexon
TCONS_00062791-exon-scaffold_372-1510915933:56382..56589TCONS_00062791-exon-scaffold_372-1510915933:56382..56589Clytia hemisphaericaexon
TCONS_00062791-exon-scaffold_372-1575043694:56382..56589TCONS_00062791-exon-scaffold_372-1575043694:56382..56589Clytia hemisphaericaexon
TCONS_00062791-exon-scaffold_372-1491911889:57127..58823TCONS_00062791-exon-scaffold_372-1491911889:57127..58823Clytia hemisphaericaexon
TCONS_00062791-exon-scaffold_372-1510915933:57127..58823TCONS_00062791-exon-scaffold_372-1510915933:57127..58823Clytia hemisphaericaexon
TCONS_00062791-exon-scaffold_372-1575043694:57127..58823TCONS_00062791-exon-scaffold_372-1575043694:57127..58823Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062791-proteinTCONS_00062791-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_372supercontigscaffold_372:54801..58823 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0349362	0.102205	0.0988915	0.01935	0.0706702	0.0558445	0.0898321	0.147174	1.23648	0.546995	0.584019	0.686386	9.47988	7.84217	1.14068	0.8835	1.96699	1.97578	10.8814	13.2326	7.87035	7.38643	1.66237	3.31402	3.3571	5.90857	0.502997	0.230062	0.0387765	0.0395071
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR001660SAM
IPR020683Ankyrin_rpt-contain_dom
IPR013761SAM/pointed
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00062791 vs. Swiss-Prot (Human)
Match: USH1G (Usher syndrome type-1G protein OS=Homo sapiens GN=USH1G PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.144e-35
Identity = 67/149 (44.97%), Postives = 100/149 (67.11%), Query Frame = 1 
Query:  184 YSAAARESDLVTLKQCSKKEANRRDEDGMTPVHWASLYGNFEALKILINVGGSPDKQNNEGASSLHLAAGNGHLPCLVYLTNFGGNVHALNDNGGSPMHEAAMKGQLECVRHLEAIVTHQVSQDRSKVEKMQTKAKKDLEKRNKGREKL 630
            Y  AAR+  L  LK+ ++KE N  DEDGMTP  WA+ +GN E+L+++++ GG PDK +  G + LHLAA NGHL CL +L +FG N+  L+++  +P+  AAMKG +ECVR+L++I   Q S +   V K++ KA ++ E+R +   KL
Sbjct:    5 YHRAARDGYLELLKEATRKELNAPDEDGMTPTLWAAYHGNLESLRLIVSRGGDPDKCDIWGNTPLHLAASNGHLHCLSFLVSFGANIWCLDNDYHTPLDMAAMKGHMECVRYLDSIAAKQSSLNPKLVGKLKDKAFREAERRIRECAKL 153
The following BLAST results are available for this feature:
BLAST of TCONS_00062791 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
USH1G6.144e-3544.97Usher syndrome type-1G protein OS=Homo sapiens GN=... [more]
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