TCONS_00062786 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062786
Unique NameTCONS_00062786
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062786 ID=TCONS_00062786|Name=TCONS_00062786|organism=Clytia hemisphaerica|type=transcript|length=547bp
ttaagaattttttttgttgtatTACCATAGGCTGTTCCAGATAATTTTTC
AAGCAGAACAagttaacttttttcaaaatgaaaagatattttcaccCAGC
CAAAAATCAGATGACAGAACAGACTAGAAATGTAGATGTTGTTAGAAAAA
TGCAATGCCATTTTGTGtataataatttttaaaaattccaatgCCTCAAG
GAGGCCTCCACAAGCGCTTTTCGGgatgacgtgatagggactttttgCAG
CGTGATTATgtgatttagaaattttttctttgtgattgcgtgatgagagg
tcaaaacgtgtgatttgaaagattttaagcTGCGTgatacgtgaattgga
ctttttcaaagggatgcatGATTGTCCAATTTTCTTTTGCTGATTTGCCT
GTTTGTGATTGCCTGAGGTTAAATAATTgtgtgatatcgtgatcagagtt
accgctggggAGCCTCCTCAAGCATCAATGATAAAAATACTTAGTATGTT
CATTCACTAGTTACGATTCTGGGTGTTATTGTGTGATTCTGGAGTTT
Run BLAST on NCBI

transcript from alignment at scaffold_371:558832..559378

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062786 ID=TCONS_00062786|Name=TCONS_00062786|organism=Clytia hemisphaerica|type=transcript|length=547bp|location=Sequence derived from alignment at scaffold_371:558832..559378 (Clytia hemisphaerica)
AAACTCCAGAATCACACAATAACACCCAGAATCGTAACTAGTGAATGAAC
ATACTAAGTATTTTTATCATTGATGCTTGAGGAGGCTccccagcggtaac
tctgatcacgatatcacacAATTATTTAACCTCAGGCAATCACAAACAGG
CAAATCAGCAAAAGAAAATTGGACAATCatgcatccctttgaaaaagtcc
aattcacgtatcACGCAgcttaaaatctttcaaatcacacgttttgacct
ctcatcacgcaatcacaaagaaaaaatttctaaatcacATAATCACGCTG
caaaaagtccctatcacgtcatcCCGAAAAGCGCTTGTGGAGGCCTCCTT
GAGGcattggaatttttaaaaattattataCACAAAATGGCATTGCATTT
TTCTAACAACATCTACATTTCTAGTCTGTTCTGTCATCTGATTTTTGGCT
GggtgaaaatatcttttcattttgaaaaaagttaactTGTTCTGCTTGAA
AAATTATCTGGAACAGCCTATGGTAatacaacaaaaaaaattcttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039336XLOC_039336Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062786-exon-scaffold_371-1491911889:558832..559378TCONS_00062786-exon-scaffold_371-1491911889:558832..559378Clytia hemisphaericaexon
TCONS_00062786-exon-scaffold_371-1510915933:558832..559378TCONS_00062786-exon-scaffold_371-1510915933:558832..559378Clytia hemisphaericaexon
TCONS_00062786-exon-scaffold_371-1575043694:558832..559378TCONS_00062786-exon-scaffold_371-1575043694:558832..559378Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:558832..559378 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.629782	0.204712	0.475381	0.69763	0	0.225136	0	0.252672	0	0	0	0.140973	0.139616	0.434978	0.0596019	0.127924	0.0787959	0	0.334736	0.233518	0	0.742512	0.120349	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062786 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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