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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062781 ID=TCONS_00062781|Name=TCONS_00062781|organism=Clytia hemisphaerica|type=transcript|length=1002bp
TGATATAAAAGACGAATAAATGACATGGTTGGTTTCTTGAAAACGTGACG
GTAATTTCCGTGCACGGAAGCCTTGGATACCGTTGCACAAAGAAAGAACG
GCTGCTATGAGAAGTTGAATATAAATCATGGTGTCGTTGCTGCAGTAGAA
TTCTTTGGTCAAAGtttggtcaaaatattgaaGATCCACGGTGACTTCTT
TGTTGATTACAGACAAGAGATGTAGCAAGGAGTTGATGATTAAAGCCACT
AGTATGATAATCCACTGCGAAGCTTTAGTCATCAGAATTTCAGTATTTGA
CATTCGAACTTTACTGTTTACGATCATGTAGAGTTTTTGAGATTTCGATA
TGTTGATGGATAGTGTTATACTGAACAATATACCAAGGCAGATCTGGCGA
AGCAAACATATTGACGGTGACGTCATTAGGAAGAGGATACTCGGTAGAAC
GAATAATAACAGATGGCTGAGTAACTGGATACTGGTCATCGTGCGGTTAG
CTAATTTAACGATAGGTGTTTCTCGCTTGACAAAGAAAACGACCATTGTC
ACTAAAGTTGTTAATGTCATCAGACACGAAGGaccaaaaacaaaattgat
aGCTAGGTCGTCAACTTTCAGCTTTTCTTCTGTGAATGGATCATAGCATT
CCGTACCTTTTTTATTGACGGTATTTGGATAAAAACATTCCGTGCAATTC
TGGTTATTCCCAGGTTGTGATTTGAAGAATCGTTCTGGACATTCCTGGCA
ATTCCAGCCATAACTTTGTGTCCAGTAATCCTCTTTATAAAACGAATGAA
CAAGTTGTTGTCCAGCATCACAAAACGGCTTTTTCTCGTTGCAATAAGGT
CGAGCTTTGAGAGCTTTGGTAGGATTAAACGACCATTGATCTAAAAGCTT
TTCTTCACTGACATTTTCGATGTAAtaagtttttttccaaaagtcgACAA
GAAGTAAAGTAGCATCTTCATGAGCCATAAGCGACTCCAATGCCTTTTCG
AG Run BLAST on NCBI protein sequence of TCONS_00062781-protein >TCONS_00062781-protein ID=TCONS_00062781-protein|Name=TCONS_00062781-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
LEKALESLMAHEDATLLLVDFWKKTYYIENVSEEKLLDQWSFNPTKALKA
RPYCNEKKPFCDAGQQLVHSFYKEDYWTQSYGWNCQECPERFFKSQPGNN
QNCTECFYPNTVNKKGTECYDPFTEEKLKVDDLAINFVFGPSCLMTLTTL
VTMVVFFVKRETPIVKLANRTMTSIQLLSHLLLFVLPSILFLMTSPSICL
LRQICLGILFSITLSINISKSQKLYMIVNSKVRMSNTEILMTKASQWIII
LVALIINSLLHLLSVINKEVTVDLQYFDQTLTKEFYCSNDTMIYIQLLIA
AVLSLCNGIQGFRARKLPSRFQETNHVIYSSFIS Run BLAST on NCBI transcript from alignment at scaffold_371:418501..419502 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062781 ID=TCONS_00062781|Name=TCONS_00062781|organism=Clytia hemisphaerica|type=transcript|length=1002bp|location=Sequence derived from alignment at scaffold_371:418501..419502 (Clytia hemisphaerica)
CTCGAAAAGGCATTGGAGTCGCTTATGGCTCATGAAGATGCTACTTTACT
TCTTGTcgacttttggaaaaaaacttaTTACATCGAAAATGTCAGTGAAG
AAAAGCTTTTAGATCAATGGTCGTTTAATCCTACCAAAGCTCTCAAAGCT
CGACCTTATTGCAACGAGAAAAAGCCGTTTTGTGATGCTGGACAACAACT
TGTTCATTCGTTTTATAAAGAGGATTACTGGACACAAAGTTATGGCTGGA
ATTGCCAGGAATGTCCAGAACGATTCTTCAAATCACAACCTGGGAATAAC
CAGAATTGCACGGAATGTTTTTATCCAAATACCGTCAATAAAAAAGGTAC
GGAATGCTATGATCCATTCACAGAAGAAAAGCTGAAAGTTGACGACCTAG
CtatcaattttgtttttggtCCTTCGTGTCTGATGACATTAACAACTTTA
GTGACAATGGTCGTTTTCTTTGTCAAGCGAGAAACACCTATCGTTAAATT
AGCTAACCGCACGATGACCAGTATCCAGTTACTCAGCCATCTGTTATTAT
TCGTTCTACCGAGTATCCTCTTCCTAATGACGTCACCGTCAATATGTTTG
CTTCGCCAGATCTGCCTTGGTATATTGTTCAGTATAACACTATCCATCAA
CATATCGAAATCTCAAAAACTCTACATGATCGTAAACAGTAAAGTTCGAA
TGTCAAATACTGAAATTCTGATGACTAAAGCTTCGCAGTGGATTATCATA
CTAGTGGCTTTAATCATCAACTCCTTGCTACATCTCTTGTCTGTAATCAA
CAAAGAAGTCACCGTGGATCttcaatattttgaccaaaCTTTGACCAAAG
AATTCTACTGCAGCAACGACACCATGATTTATATTCAACTTCTCATAGCA
GCCGTTCTTTCTTTGTGCAACGGTATCCAAGGCTTCCGTGCACGGAAATT
ACCGTCACGTTTTCAAGAAACCAACCATGTCATTTATTCGTCTTTTATAT
CA Coding sequence (CDS) from alignment at scaffold_371:418501..419502 >TCONS_00062781 ID=TCONS_00062781|Name=TCONS_00062781|organism=Clytia hemisphaerica|type=CDS|length=1002bp|location=Sequence derived from alignment at scaffold_371:418501..419502 (Clytia hemisphaerica)
CTCGAAAAGGCATTGGAGTCGCTTATGGCTCATGAAGATGCTACTTTACT
TCTTGTcgacttttggaaaaaaacttaTTACATCGAAAATGTCAGTGAAG
AAAAGCTTTTAGATCAATGGTCGTTTAATCCTACCAAAGCTCTCAAAGCT
CGACCTTATTGCAACGAGAAAAAGCCGTTTTGTGATGCTGGACAACAACT
TGTTCATTCGTTTTATAAAGAGGATTACTGGACACAAAGTTATGGCTGGA
ATTGCCAGGAATGTCCAGAACGATTCTTCAAATCACAACCTGGGAATAAC
CAGAATTGCACGGAATGTTTTTATCCAAATACCGTCAATAAAAAAGGTAC
GGAATGCTATGATCCATTCACAGAAGAAAAGCTGAAAGTTGACGACCTAG
CtatcaattttgtttttggtCCTTCGTGTCTGATGACATTAACAACTTTA
GTGACAATGGTCGTTTTCTTTGTCAAGCGAGAAACACCTATCGTTAAATT
AGCTAACCGCACGATGACCAGTATCCAGTTACTCAGCCATCTGTTATTAT
TCGTTCTACCGAGTATCCTCTTCCTAATGACGTCACCGTCAATATGTTTG
CTTCGCCAGATCTGCCTTGGTATATTGTTCAGTATAACACTATCCATCAA
CATATCGAAATCTCAAAAACTCTACATGATCGTAAACAGTAAAGTTCGAA
TGTCAAATACTGAAATTCTGATGACTAAAGCTTCGCAGTGGATTATCATA
CTAGTGGCTTTAATCATCAACTCCTTGCTACATCTCTTGTCTGTAATCAA
CAAAGAAGTCACCGTGGATCttcaatattttgaccaaaCTTTGACCAAAG
AATTCTACTGCAGCAACGACACCATGATTTATATTCAACTTCTCATAGCA
GCCGTTCTTTCTTTGTGCAACGGTATCCAAGGCTTCCGTGCACGGAAATT
ACCGTCACGTTTTCAAGAAACCAACCATGTCATTTATTCGTCTTTTATAT
CA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062781-exon-scaffold_371-1491911889:418501..419502 | TCONS_00062781-exon-scaffold_371-1491911889:418501..419502 | Clytia hemisphaerica | exon |
| TCONS_00062781-exon-scaffold_371-1510915933:418501..419502 | TCONS_00062781-exon-scaffold_371-1510915933:418501..419502 | Clytia hemisphaerica | exon |
| TCONS_00062781-exon-scaffold_371-1575043694:418501..419502 | TCONS_00062781-exon-scaffold_371-1575043694:418501..419502 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_371 | supercontig | scaffold_371:418501..419502 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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