TCONS_00062768 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062768
Unique NameTCONS_00062768
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062768 ID=TCONS_00062768|Name=TCONS_00062768|organism=Clytia hemisphaerica|type=transcript|length=386bp
GACTGTGCCCGCAAACTGTTCCAAGCAAAGTTCCTTTTATCGAAAATAAC
ATATGTCATAAAAATTTACTGTTTGTTGGCCTATCAGAAACATGGCTCAA
CAATCATAAAGATGCAGAACTAAAAGTAGAAATTTATACTTTGTTCAAAT
GTGAttcatcacgcaagaaaaaatcaagagggAGAGCAACTGGAGTAGTC
TGCTTCTACATAAGAGATGATATAGCTGCTTCATGTGAAATAATCTACTC
CCATAAATCACCAAGTGTACaactcctttgtgtttactcAAAGACTGAAA
ACTTGGCTATGCTTGTAATATATAGACAACCTGATGACAAGAGTAATGGA
AATCCATCAACAGCTAAAGACCTTCTTACACCGCNN
Run BLAST on NCBI

protein sequence of TCONS_00062768-protein

>TCONS_00062768-protein ID=TCONS_00062768-protein|Name=TCONS_00062768-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
LCPQTVPSKVPFIENNICHKNLLFVGLSETWLNNHKDAELKVEIYTLFKC
DSSRKKKSRGRATGVVCFYIRDDIAASCEIIYSHKSPSVQLLCVYSKTEN
LAMLVIYRQPDDKSNGNPSTAKDLLTPX
Run BLAST on NCBI

transcript from alignment at scaffold_371:190166..190551

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062768 ID=TCONS_00062768|Name=TCONS_00062768|organism=Clytia hemisphaerica|type=transcript|length=386bp|location=Sequence derived from alignment at scaffold_371:190166..190551 (Clytia hemisphaerica)
NNGCGGTGTAAGAAGGTCTTTAGCTGTTGATGGATTTCCATTACTCTTGT
CATCAGGTTGTCTATATATTACAAGCATAGCCAAGTTTTCAGTCTTTgag
taaacacaaaggagttGTACACTTGGTGATTTATGGGAGTAGATTATTTC
ACATGAAGCAGCTATATCATCTCTTATGTAGAAGCAGACTACTCCAGTTG
CTCTccctcttgattttttcttgcgtgatgaaTCACATTTGAACAAAGTA
TAAATTTCTACTTTTAGTTCTGCATCTTTATGATTGTTGAGCCATGTTTC
TGATAGGCCAACAAACAGTAAATTTTTATGACATATGTTATTTTCGATAA
AAGGAACTTTGCTTGGAACAGTTTGCGGGCACAGTC

Coding sequence (CDS) from alignment at scaffold_371:190166..190551

>TCONS_00062768 ID=TCONS_00062768|Name=TCONS_00062768|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at scaffold_371:190166..190551 (Clytia hemisphaerica)
NNGCGGTGTAAGAAGGTCTTTAGCTGTTGATGGATTTCCATTACTCTTGT
CATCAGGTTGTCTATATATTACAAGCATAGCCAAGTTTTCAGTCTTTgag
taaacacaaaggagttGTACACTTGGTGATTTATGGGAGTAGATTATTTC
ACATGAAGCAGCTATATCATCTCTTATGTAGAAGCAGACTACTCCAGTTG
CTCTccctcttgattttttcttgcgtgatgaaTCACATTTGAACAAAGTA
TAAATTTCTACTTTTAGTTCTGCATCTTTATGATTGTTGAGCCATGTTTC
TGATAGGCCAACAAACAGTAAATTTTTATGACATATGTTATTTTCGATAA
AAGGAACTTTGCTTGGAACAGTTTGCGGGCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039318XLOC_039318Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062768-exon-scaffold_371-1491911889:190166..190551TCONS_00062768-exon-scaffold_371-1491911889:190166..190551Clytia hemisphaericaexon
TCONS_00062768-exon-scaffold_371-1510915933:190166..190551TCONS_00062768-exon-scaffold_371-1510915933:190166..190551Clytia hemisphaericaexon
TCONS_00062768-exon-scaffold_371-1575043694:190166..190551TCONS_00062768-exon-scaffold_371-1575043694:190166..190551Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062768-proteinTCONS_00062768-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:190166..190551 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.05892	3.00645	2.80023	0.757911	1.35152	2.1025	4.45055	3.06352	3.60525	1.78557	7.23663	1.78903	3.01777	3.99388	0.455264	0.972672	0.193096	1.42858	0	1.84691	2.75779	0.729103	0.316597	2.33562	2.40377	3.15868	0.409067	0.757605	0.711407	0.634103
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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