|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062765 ID=TCONS_00062765|Name=TCONS_00062765|organism=Clytia hemisphaerica|type=transcript|length=1438bp
attttttcttatttcactTAGAATAaatagaaaatgaatatataTCTTTT
ATATGGTGTCTTGCTTCTCATTAACGGTAATTTTGCACGTGAAAACGAGG
CTGAACATGCATGTAGTTTAACATATAATGACGAACCTTATTGCCAATAT
ACAGAAGGTGATTGTCAATCGCGTATCGTCATAAATTCCCCACACGGTGG
AGAAATGGAACCGCCTGATATACCGGAACGGAAAGGAGGTTGTTACGTAA
ACGGCAAATGCGATTGGAAATATGATTGCTCTcctaaaaatcttaaaaag
tgTCCTGGAGTCGAGGAAGTTGCCAATGATGATGGTTCCCAAACTATAGC
AAGATATATCGTAAATTTTATTAAAGAATCAACCGGAGTTAGACCACATT
ATACAAGAAATAATCTACACCGAAGCCGCATTGATGCAAACCGAGAGATT
CATGAAGCAACTTATGATTTCCCAAAGTTGATGGAGGCTTACCACGAATA
TCATGAAATTCTTAAAAAAGCTTGCGCTAAAATCCAAGGACCTggtgttt
ttcttgaaattcataGCCATACTGGACAAGACTCTACTAACCCGTTCTTC
GTGCTAGGATATAATATTGGAAGAAAGAAATTCGCTGTCGAGACATTAAC
AAATTCTACCGAATGTTCGATAAAGAGTCTTATAAAACGTTCAGAGAGCT
CTATGGAAGAGCTTATAAGAGGTGACAAAAGTCTGGGTTATTTTTTAGCT
GAGAAAGGCTACCCCCGCGTAATGCCCAGCCCGGCTGTTAAAGACCCTGC
AATATACACGGGTTATTATAAAGGTGGATACAACATACAAAAGTACGGGT
CAAAAGATGAAGGAGAAATTGACGCAATACAAGTCGAAGTCCATAAATTT
TATaataaagagaaagaaaaagttgCAAAAGCGATTGCAGAATCAATCAT
CGAATGGACTAATTTACATTATGGGGACCTTCCGAAGCAAGATTGCTCCG
TTGACAGTGAAGATGACTCTTCAACTTGAAGAATGTCTATGGAGAAAATT
TTAATGATATAAGGGGAGTCAAGGTGTATTTTGTATAATCACATTTATAA
AATTAAAGTCATTGCATGGGGCTGTAAGTTAGCGACTAGTGAGAATTCAT
CCGCCGAAAGTCCTAGTTATTTATGGAACTGCATGCTGAATGAATTTAGC
CTCGTCCCCGTGTTTCCCAGACTTTACTTACGCTACTGANCATTTTTAAT
TGCTCTTGGGAATAACGTAGATGTTATtgtatgttattatttttgccttt
gataacaaaatatttttaatgtcTTGGGAATACGAAAAGTCTTCGGCAAA
AGCAATCATATTTCTACCGAGTTAGTTTGCAACTAAGCTAATAGAGGACA
TCATATTTTTCTACTATTAGCTTAGAACCTTGGCTAAG Run BLAST on NCBI protein sequence of TCONS_00062765-protein >TCONS_00062765-protein ID=TCONS_00062765-protein|Name=TCONS_00062765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
MNIYLLYGVLLLINGNFARENEAEHACSLTYNDEPYCQYTEGDCQSRIVI
NSPHGGEMEPPDIPERKGGCYVNGKCDWKYDCSPKNLKKCPGVEEVANDD
GSQTIARYIVNFIKESTGVRPHYTRNNLHRSRIDANREIHEATYDFPKLM
EAYHEYHEILKKACAKIQGPGVFLEIHSHTGQDSTNPFFVLGYNIGRKKF
AVETLTNSTECSIKSLIKRSESSMEELIRGDKSLGYFLAEKGYPRVMPSP
AVKDPAIYTGYYKGGYNIQKYGSKDEGEIDAIQVEVHKFYNKEKEKVAKA
IAESIIEWTNLHYGDLPKQDCSVDSEDDSST Run BLAST on NCBI transcript from alignment at scaffold_371:31753..33190 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062765 ID=TCONS_00062765|Name=TCONS_00062765|organism=Clytia hemisphaerica|type=transcript|length=1438bp|location=Sequence derived from alignment at scaffold_371:31753..33190 (Clytia hemisphaerica)
CTTAGCCAAGGTTCTAAGCTAATAGTAGAAAAATATGATGTCCTCTATTA
GCTTAGTTGCAAACTAACTCGGTAGAAATATGATTGCTTTTGCCGAAGAC
TTTTCGTATTCCCAAgacattaaaaatattttgttatcaaaggcaaaaat
aataacatacaATAACATCTACGTTATTCCCAAGAGCAATTAAAAATGNT
CAGTAGCGTAAGTAAAGTCTGGGAAACACGGGGACGAGGCTAAATTCATT
CAGCATGCAGTTCCATAAATAACTAGGACTTTCGGCGGATGAATTCTCAC
TAGTCGCTAACTTACAGCCCCATGCAATGACTTTAATTTTATAAATGTGA
TTATACAAAATACACCTTGACTCCCCTTATATCATTAAAATTTTCTCCAT
AGACATTCTTCAAGTTGAAGAGTCATCTTCACTGTCAACGGAGCAATCTT
GCTTCGGAAGGTCCCCATAATGTAAATTAGTCCATTCGATGATTGATTCT
GCAATCGCTTTTGcaactttttctttctctttattATAAAATTTATGGAC
TTCGACTTGTATTGCGTCAATTTCTCCTTCATCTTTTGACCCGTACTTTT
GTATGTTGTATCCACCTTTATAATAACCCGTGTATATTGCAGGGTCTTTA
ACAGCCGGGCTGGGCATTACGCGGGGGTAGCCTTTCTCAGCTAAAAAATA
ACCCAGACTTTTGTCACCTCTTATAAGCTCTTCCATAGAGCTCTCTGAAC
GTTTTATAAGACTCTTTATCGAACATTCGGTAGAATTTGTTAATGTCTCG
ACAGCGAATTTCTTTCTTCCAATATTATATCCTAGCACGAAGAACGGGTT
AGTAGAGTCTTGTCCAGTATGGCtatgaatttcaagaaaaacaccAGGTC
CTTGGATTTTAGCGCAAGCTTTTTTAAGAATTTCATGATATTCGTGGTAA
GCCTCCATCAACTTTGGGAAATCATAAGTTGCTTCATGAATCTCTCGGTT
TGCATCAATGCGGCTTCGGTGTAGATTATTTCTTGTATAATGTGGTCTAA
CTCCGGTTGATTCTTTAATAAAATTTACGATATATCTTGCTATAGTTTGG
GAACCATCATCATTGGCAACTTCCTCGACTCCAGGAcactttttaagatt
tttaggAGAGCAATCATATTTCCAATCGCATTTGCCGTTTACGTAACAAC
CTCCTTTCCGTTCCGGTATATCAGGCGGTTCCATTTCTCCACCGTGTGGG
GAATTTATGACGATACGCGATTGACAATCACCTTCTGTATATTGGCAATA
AGGTTCGTCATTATATGTTAAACTACATGCATGTTCAGCCTCGTTTTCAC
GTGCAAAATTACCGTTAATGAGAAGCAAGACACCATATAAAAGAtatata
ttcattttctattTATTCTAagtgaaataagaaaaaat Coding sequence (CDS) from alignment at scaffold_371:31753..33190 >TCONS_00062765 ID=TCONS_00062765|Name=TCONS_00062765|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_371:31753..33190 (Clytia hemisphaerica)
TCAAGTTGAAGAGTCATCTTCACTGTCAACGGAGCAATCTTGCTTCGGAA
GGTCCCCATAATGTAAATTAGTCCATTCGATGATTGATTCTGCAATCGCT
TTTGcaactttttctttctctttattATAAAATTTATGGACTTCGACTTG
TATTGCGTCAATTTCTCCTTCATCTTTTGACCCGTACTTTTGTATGTTGT
ATCCACCTTTATAATAACCCGTGTATATTGCAGGGTCTTTAACAGCCGGG
CTGGGCATTACGCGGGGGTAGCCTTTCTCAGCTAAAAAATAACCCAGACT
TTTGTCACCTCTTATAAGCTCTTCCATAGAGCTCTCTGAACGTTTTATAA
GACTCTTTATCGAACATTCGGTAGAATTTGTTAATGTCTCGACAGCGAAT
TTCTTTCTTCCAATATTATATCCTAGCACGAAGAACGGGTTAGTAGAGTC
TTGTCCAGTATGGCtatgaatttcaagaaaaacaccAGGTCCTTGGATTT
TAGCGCAAGCTTTTTTAAGAATTTCATGATATTCGTGGTAAGCCTCCATC
AACTTTGGGAAATCATAAGTTGCTTCATGAATCTCTCGGTTTGCATCAAT
GCGGCTTCGGTGTAGATTATTTCTTGTATAATGTGGTCTAACTCCGGTTG
ATTCTTTAATAAAATTTACGATATATCTTGCTATAGTTTGGGAACCATCA
TCATTGGCAACTTCCTCGACTCCAGGAcactttttaagatttttaggAGA
GCAATCATATTTCCAATCGCATTTGCCGTTTACGTAACAACCTCCTTTCC
GTTCCGGTATATCAGGCGGTTCCATTTCTCCACCGTGTGGGGAATTTATG
ACGATACGCGATTGACAATCACCTTCTGTATATTGGCAATAAGGTTCGTC
ATTATATGTTAAACTACATGCATGTTCAGCCTCGTTTTCACGTGCAAAAT
TACCGTTAATGAGAAGCAAGACACCATATAAAAGAtatatattcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062765-exon-scaffold_371-1491911889:31753..33190 | TCONS_00062765-exon-scaffold_371-1491911889:31753..33190 | Clytia hemisphaerica | exon |
| TCONS_00062765-exon-scaffold_371-1510915933:31753..33190 | TCONS_00062765-exon-scaffold_371-1510915933:31753..33190 | Clytia hemisphaerica | exon |
| TCONS_00062765-exon-scaffold_371-1575043694:31753..33190 | TCONS_00062765-exon-scaffold_371-1575043694:31753..33190 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_371 | supercontig | scaffold_371:31753..33190 . |
Blast
The following BLAST results are available for this feature:
|
