TCONS_00062764 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062764
Unique NameTCONS_00062764
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length875

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062764 ID=TCONS_00062764|Name=TCONS_00062764|organism=Clytia hemisphaerica|type=transcript|length=875bp
GGGGGTtgaaaatctttcgaaaaaatGAATGAACTCTAAATTATGAGGAC
ATTGCAATTCATGAGTTGCAGTAGAAAGACAATAAGAACTTCATTATTGC
ACCTTCTGATAATTTATGACATTGCTGATGAAACATGATAGAATGTTACA
TGTCAAATGAAGGGGTTTGGGTTGAATTTTCCAGGGTCGGATGACGTCAC
ATAATTAAAGCCACCCCTGTGTAACAGACCTGCTTGGACCTCTCAGCCCC
ACTTGAAAAATGGCCCAAAATTTTGTTCCCGGTGGAAAATATATCCTAAA
ATTTCAACCCTACTGCACTGACTCTAATTATATCccaatttgaaattcaa
tagaaaaattgcactccaaatcCATTCCATTGaaatttttgagctgaaaa
ataaaagaatttcaatCCCCATCGGAATTTCAATAGAAAGTTTTTATCCT
CGCTGTGAACGAAGTTTCTACCGGgcctgtgagacagggttgtctAAAGC
AATTGCATTGACATGCTCACAGATACAgatatttgacgtcactcgATCCT
TGTAAAATCGAACCCAGGCTCCTTGTGGTGTGAGCGTTGGTTGGTGTCTT
GTGAACCATTTCATTATCACATTAAAGACATTCATTTTACAGCGCCCACT
TACAAAGTTTGAAGACTTTGAAAAATGGGAATCAGGAAACTTGCTAAAAA
CTGTGCTTGGTTATACATATAATGATTAAGTACTACCCGATAAGATTTTT
AttataattcaaattcaatattatgAGAAGATATTGCACGATGAGATGCT
CCGCTTGCTACCTCTGTAACCCAAGATTTTCTATAGTTTAGTTGAGTTTG
AGTGTACTAAATGTAATTTTAAGAC
Run BLAST on NCBI

transcript from alignment at scaffold_371:30772..31646

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062764 ID=TCONS_00062764|Name=TCONS_00062764|organism=Clytia hemisphaerica|type=transcript|length=875bp|location=Sequence derived from alignment at scaffold_371:30772..31646 (Clytia hemisphaerica)
GTCTTAAAATTACATTTAGTACACTCAAACTCAACTAAACTATAGAAAAT
CTTGGGTTACAGAGGTAGCAAGCGGAGCATCTCATCGTGCAATATCTTCT
cataatattgaatttgaattataaTAAAAATCTTATCGGGTAGTACTTAA
TCATTATATGTATAACCAAGCACAGTTTTTAGCAAGTTTCCTGATTCCCA
TTTTTCAAAGTCTTCAAACTTTGTAAGTGGGCGCTGTAAAATGAATGTCT
TTAATGTGATAATGAAATGGTTCACAAGACACCAACCAACGCTCACACCA
CAAGGAGCCTGGGTTCGATTTTACAAGGATcgagtgacgtcaaatatcTG
TATCTGTGAGCATGTCAATGCAATTGCTTTagacaaccctgtctcacagg
cCCGGTAGAAACTTCGTTCACAGCGAGGATAAAAACTTTCTATTGAAATT
CCGATGGGGattgaaattcttttatttttcagctcaaaaatttCAATGGA
ATGgatttggagtgcaatttttctattgaatttcaaattggGATATAATT
AGAGTCAGTGCAGTAGGGTTGAAATTTTAGGATATATTTTCCACCGGGAA
CAAAATTTTGGGCCATTTTTCAAGTGGGGCTGAGAGGTCCAAGCAGGTCT
GTTACACAGGGGTGGCTTTAATTATGTGACGTCATCCGACCCTGGAAAAT
TCAACCCAAACCCCTTCATTTGACATGTAACATTCTATCATGTTTCATCA
GCAATGTCATAAATTATCAGAAGGTGCAATAATGAAGTTCTTATTGTCTT
TCTACTGCAACTCATGAATTGCAATGTCCTCATAATTTAGAGTTCATTCa
ttttttcgaaagattttcaACCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039314XLOC_039314Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062764-exon-scaffold_371-1491911889:30772..31646TCONS_00062764-exon-scaffold_371-1491911889:30772..31646Clytia hemisphaericaexon
TCONS_00062764-exon-scaffold_371-1510915933:30772..31646TCONS_00062764-exon-scaffold_371-1510915933:30772..31646Clytia hemisphaericaexon
TCONS_00062764-exon-scaffold_371-1575043694:30772..31646TCONS_00062764-exon-scaffold_371-1575043694:30772..31646Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:30772..31646 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0532699	0.0519465	0.12063	0	0.143675	0.340601	1.23276	1.98761	0.179558	0.0556029	0.485726	0.425729	1.87769	1.98679	0.967949	2.62935	1.43962	1.96742	0	0	0.618052	0.904393	0.0610782	0.111058	0	0.0510438	0	0	0	0.0602394
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062764 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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