TCONS_00062761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062761
Unique NameTCONS_00062761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length427

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062761 ID=TCONS_00062761|Name=TCONS_00062761|organism=Clytia hemisphaerica|type=transcript|length=427bp
CTTTTGAGATAAGGTTGTTGAGAGTTGACGatgtcaacattttttgtctt
tgattttatgtttgatGAACAATATTGATAACTTTTCACTGTCACCTTGG
AATTGTGGTGTAGTGTTCTTGAGACGTTTTATACACAGCATTTATGCAGT
CGCACGCTGGTAAgataatatttcattttattaagTTTGATATTTTGCCC
TATTTTCTAGACTTAGAGTATTTGGCTTGTCAaacaatattttctatttt
cactgagatttgtgAATATTTATTTTATCAGATTGAGGACaattcttgat
ttgattttgtacaaattttgatAAGATTTGTGaccaaagaattttctttt
gttcttagtTTGAACGCACTGTTACAAACACGTCACGTACTGACTCGTCT
CAATTCGCTGTTCCCACAACATTaacg
Run BLAST on NCBI

transcript from alignment at scaffold_371:11239..11665

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062761 ID=TCONS_00062761|Name=TCONS_00062761|organism=Clytia hemisphaerica|type=transcript|length=427bp|location=Sequence derived from alignment at scaffold_371:11239..11665 (Clytia hemisphaerica)
cgttAATGTTGTGGGAACAGCGAATTGAGACGAGTCAGTACGTGACGTGT
TTGTAACAGTGCGTTCAAactaagaacaaaagaaaattctttggtCACAA
ATCTTatcaaaatttgtacaaaatcaaatcaagaattGTCCTCAATCTGA
TAAAATAAATATTcacaaatctcagtgaaaatagaaaatattgttTGACA
AGCCAAATACTCTAAGTCTAGAAAATAGGGCAAAATATCAAActtaataa
aatgaaatattatcTTACCAGCGTGCGACTGCATAAATGCTGTGTATAAA
ACGTCTCAAGAACACTACACCACAATTCCAAGGTGACAGTGAAAAGTTAT
CAATATTGTTCatcaaacataaaatcaaagacaaaaaatgttgacatCGT
CAACTCTCAACAACCTTATCTCAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039311XLOC_039311Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062761-exon-scaffold_371-1491911889:11239..11665TCONS_00062761-exon-scaffold_371-1491911889:11239..11665Clytia hemisphaericaexon
TCONS_00062761-exon-scaffold_371-1510915933:11239..11665TCONS_00062761-exon-scaffold_371-1510915933:11239..11665Clytia hemisphaericaexon
TCONS_00062761-exon-scaffold_371-1575043694:11239..11665TCONS_00062761-exon-scaffold_371-1575043694:11239..11665Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:11239..11665 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.50442	2.81951	1.82637	2.01694	3.50327	2.01703	1.80343	2.24975	1.74359	1.47521	0.659518	2.25125	0.921412	0.851053	0.408924	0.396681	0.891596	0.50088	0.518995	0.607651	2.24	0.774338	0.932983	1.12305	5.13141	5.22368	0.446303	0.952613	0.852395	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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