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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062757 ID=TCONS_00062757|Name=TCONS_00062757|organism=Clytia hemisphaerica|type=transcript|length=1096bp
gtcaaatgaaagatttaaacactttttgacgtcaatttaatTAAGTAGAG
TTCAAGTAACTTTGTGCAATACTTTCTAACAACTGTATTCTCAACCAAGT
AAACACCACCGGTTATCTAGTACATACACAAGCACAAAGCACcgactttt
tctttctttgtcaGCAACATTTTTCAAGATGCGAACCAGAAGTAGAGCAT
TAAGACGACGCGGACGATCTCCAGGTCGTAGGTTACGATCTTTATCACGA
AGACGTAGTCCCATGTCTCGTAAACAACGATCCCGCTCACGTAACCAGCG
CTCAATCTCACGTCAACGTGCTCGTTCACAAAGCCCGAGAGCAGTGTCCC
AAAAACGTTCGGCATCTCGAAAACGATCGGGATCGAATCGTCGACGTAGA
ACTTATGGAAGAAAGAGTTCACCGAGTATTGCACGACAACGATCACCATC
GGTACGCAGAAGTCATTCGGTAAGACGAAAACGTTCTCGTTCTGCTAAAC
GAAGCCAGTCGGCGGCTGTTGTTAATAAGCAAACAAACCAAGAAACGAAA
AAGTTGGTTCAAACTTTAACGGAAAGTCAATCAACACCTTCTTCAAAGAA
ATTAAACTCCCAGAAAAGATCAGGATCCCGAAAGAGGTCAGCCTCGAGAA
AAAAGTCCACTTCTCGAAAACGTCTTGTGTCGGCAAAACCATCGACCCCA
CCCACCGACGTTCCTCAAGAAATATACTGCACACCAAAAAGATCGGTTTC
CAAAAAGCGACGTGCTAGACGACAAAAGTCGGCTATACCGACACGAAAAC
GATCAGCCTCGGCAAAACGAAAACGTTCTGCCTCCCGTAAGAGATCTTCT
TCCCGAAAACGATCAACATCGGCAAAACGAAAAAGGTCGGCTAGCCGAAG
ACGGTCGGCACGACAAAGAAAAGCAGCAGCTAAACAAAACCAACCAAAAA
CTCGTTCTATCACTTTCGGAGAAACCACGAAAGCTGAAACTACTGTTGGA
GAGTTCGAGCTTATCGATTTGTCAGATTgattaaaatgttttgaataaaG
AAACGAATCTAAGAATAAACACTTTGAAAAAGAACCTTCAAATGTT Run BLAST on NCBI protein sequence of TCONS_00062757-protein >TCONS_00062757-protein ID=TCONS_00062757-protein|Name=TCONS_00062757-protein|organism=Clytia hemisphaerica|type=polypeptide|length=283bp
MRTRSRALRRRGRSPGRRLRSLSRRRSPMSRKQRSRSRNQRSISRQRARS
QSPRAVSQKRSASRKRSGSNRRRRTYGRKSSPSIARQRSPSVRRSHSVRR
KRSRSAKRSQSAAVVNKQTNQETKKLVQTLTESQSTPSSKKLNSQKRSGS
RKRSASRKKSTSRKRLVSAKPSTPPTDVPQEIYCTPKRSVSKKRRARRQK
SAIPTRKRSASAKRKRSASRKRSSSRKRSTSAKRKRSASRRRSARQRKAA
AKQNQPKTRSITFGETTKAETTVGEFELIDLSD Run BLAST on NCBI transcript from alignment at scaffold_371:441325..442546- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062757 ID=TCONS_00062757|Name=TCONS_00062757|organism=Clytia hemisphaerica|type=transcript|length=1222bp|location=Sequence derived from alignment at scaffold_371:441325..442546- (Clytia hemisphaerica)
GTCAAATGAAAGATTTAAACACTTTTTGACGTCAATTTAATTAAGTAGAG
TTCAAGTAACTTTGTGCAATACTTTCTAACAACTGTATTCTCAACCAAGT
AAACACCACCGGTTATCTAGTACATACACAAGCACAAAGCACCGACTTTT
TCTTTCTTTGTCAGCAACATTTTTCAAGATGCGAACCAGAAGTAGAGCAT
TAAGTAAGTATAAAACTTATGTTGAAGATGTTGAAAACATTGTAATGTTA
ATGCATGCCAAATACATAATAGTATAGTTGATCATCTTCCACCATAAAAC
TAAACAAAGTTCTTATTCTTAATCTTTAGGACGACGCGGACGATCTCCAG
GTCGTAGGTTACGATCTTTATCACGAAGACGTAGTCCCATGTCTCGTAAA
CAACGATCCCGCTCACGTAACCAGCGCTCAATCTCACGTCAACGTGCTCG
TTCACAAAGCCCGAGAGCAGTGTCCCAAAAACGTTCGGCATCTCGAAAAC
GATCGGGATCGAATCGTCGACGTAGAACTTATGGAAGAAAGAGTTCACCG
AGTATTGCACGACAACGATCACCATCGGTACGCAGAAGTCATTCGGTAAG
ACGAAAACGTTCTCGTTCTGCTAAACGAAGCCAGTCGGCGGCTGTTGTTA
ATAAGCAAACAAACCAAGAAACGAAAAAGTTGGTTCAAACTTTAACGGAA
AGTCAATCAACACCTTCTTCAAAGAAATTAAACTCCCAGAAAAGATCAGG
ATCCCGAAAGAGGTCAGCCTCGAGAAAAAAGTCCACTTCTCGAAAACGTC
TTGTGTCGGCAAAACCATCGACCCCACCCACCGACGTTCCTCAAGAAATA
TACTGCACACCAAAAAGATCGGTTTCCAAAAAGCGACGTGCTAGACGACA
AAAGTCGGCTATACCGACACGAAAACGATCAGCCTCGGCAAAACGAAAAC
GTTCTGCCTCCCGTAAGAGATCTTCTTCCCGAAAACGATCAACATCGGCA
AAACGAAAAAGGTCGGCTAGCCGAAGACGGTCGGCACGACAAAGAAAAGC
AGCAGCTAAACAAAACCAACCAAAAACTCGTTCTATCACTTTCGGAGAAA
CCACGAAAGCTGAAACTACTGTTGGAGAGTTCGAGCTTATCGATTTGTCA
GATTGATTAAAATGTTTTGAATAAAGAAACGAATCTAAGAATAAACACTT
TGAAAAAGAACCTTCAAATGTT Coding sequence (CDS) from alignment at scaffold_371:441325..442546- >TCONS_00062757 ID=TCONS_00062757|Name=TCONS_00062757|organism=Clytia hemisphaerica|type=CDS|length=1704bp|location=Sequence derived from alignment at scaffold_371:441325..442546- (Clytia hemisphaerica)
GACGACGCGGACGATCTCCAGGTCGTAGGTTACGATCTTTATCACGAAGA
CGTAGTCCCATGTCTCGTAAACAACGATCCCGCTCACGTAACCAGCGCTC
AATCTCACGTCAACGTGCTCGTTCACAAAGCCCGAGAGCAGTGTCCCAAA
AACGTTCGGCATCTCGAAAACGATCGGGATCGAATCGTCGACGTAGAACT
TATGGAAGAAAGAGTTCACCGAGTATTGCACGACAACGATCACCATCGGT
ACGCAGAAGTCATTCGGTAAGACGAAAACGTTCTCGTTCTGCTAAACGAA
GCCAGTCGGCGGCTGTTGTTAATAAGCAAACAAACCAAGAAACGAAAAAG
TTGGTTCAAACTTTAACGGAAAGTCAATCAACACCTTCTTCAAAGAAATT
AAACTCCCAGAAAAGATCAGGATCCCGAAAGAGGTCAGCCTCGAGAAAAA
AGTCCACTTCTCGAAAACGTCTTGTGTCGGCAAAACCATCGACCCCACCC
ACCGACGTTCCTCAAGAAATATACTGCACACCAAAAAGATCGGTTTCCAA
AAAGCGACGTGCTAGACGACAAAAGTCGGCTATACCGACACGAAAACGAT
CAGCCTCGGCAAAACGAAAACGTTCTGCCTCCCGTAAGAGATCTTCTTCC
CGAAAACGATCAACATCGGCAAAACGAAAAAGGTCGGCTAGCCGAAGACG
GTCGGCACGACAAAGAAAAGCAGCAGCTAAACAAAACCAACCAAAAACTC
GTTCTATCACTTTCGGAGAAACCACGAAAGCTGAAACTACTGTTGGAGAG
TTCGAGCTTATCGATTTGTCAGATTGAATGCGAACCAGAAGTAGAGCATT
AAGACGACGCGGACGATCTCCAGGTCGTAGGTTACGATCTTTATCACGAA
GACGTAGTCCCATGTCTCGTAAACAACGATCCCGCTCACGTAACCAGCGC
TCAATCTCACGTCAACGTGCTCGTTCACAAAGCCCGAGAGCAGTGTCCCA
AAAACGTTCGGCATCTCGAAAACGATCGGGATCGAATCGTCGACGTAGAA
CTTATGGAAGAAAGAGTTCACCGAGTATTGCACGACAACGATCACCATCG
GTACGCAGAAGTCATTCGGTAAGACGAAAACGTTCTCGTTCTGCTAAACG
AAGCCAGTCGGCGGCTGTTGTTAATAAGCAAACAAACCAAGAAACGAAAA
AGTTGGTTCAAACTTTAACGGAAAGTCAATCAACACCTTCTTCAAAGAAA
TTAAACTCCCAGAAAAGATCAGGATCCCGAAAGAGGTCAGCCTCGAGAAA
AAAGTCCACTTCTCGAAAACGTCTTGTGTCGGCAAAACCATCGACCCCAC
CCACCGACGTTCCTCAAGAAATATACTGCACACCAAAAAGATCGGTTTCC
AAAAAGCGACGTGCTAGACGACAAAAGTCGGCTATACCGACACGAAAACG
ATCAGCCTCGGCAAAACGAAAACGTTCTGCCTCCCGTAAGAGATCTTCTT
CCCGAAAACGATCAACATCGGCAAAACGAAAAAGGTCGGCTAGCCGAAGA
CGGTCGGCACGACAAAGAAAAGCAGCAGCTAAACAAAACCAACCAAAAAC
TCGTTCTATCACTTTCGGAGAAACCACGAAAGCTGAAACTACTGTTGGAG
AGTTCGAGCTTATCGATTTGTCAGATTGAATGCGAACCAGAAGTAGAGCA
TTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062757-exon-scaffold_371-1575043694:442344..442546 | TCONS_00062757-exon-scaffold_371-1575043694:442344..442546 | Clytia hemisphaerica | exon |
| TCONS_00062757-exon-scaffold_371-1575043694:441325..442217 | TCONS_00062757-exon-scaffold_371-1575043694:441325..442217 | Clytia hemisphaerica | exon |
| TCONS_00062757-exon-scaffold_371-1510915933:442344..442546 | TCONS_00062757-exon-scaffold_371-1510915933:442344..442546 | Clytia hemisphaerica | exon |
| TCONS_00062757-exon-scaffold_371-1510915933:441325..442217 | TCONS_00062757-exon-scaffold_371-1510915933:441325..442217 | Clytia hemisphaerica | exon |
| TCONS_00062757-exon-scaffold_371-1491911889:442344..442546 | TCONS_00062757-exon-scaffold_371-1491911889:442344..442546 | Clytia hemisphaerica | exon |
| TCONS_00062757-exon-scaffold_371-1491911889:441325..442217 | TCONS_00062757-exon-scaffold_371-1491911889:441325..442217 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_371 | supercontig | scaffold_371:441325..442546 - |
Blast
The following BLAST results are available for this feature:
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