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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062731 ID=TCONS_00062731|Name=TCONS_00062731|organism=Clytia hemisphaerica|type=transcript|length=3313bpRun BLAST on NCBI protein sequence of TCONS_00062731-protein >TCONS_00062731-protein ID=TCONS_00062731-protein|Name=TCONS_00062731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=585bp MLSGAFYGSDAHYRTTKFTSSTINHVDKLNNVENEEVIFCSLLDTNGKEVRun BLAST on NCBI transcript from alignment at scaffold_371:313521..324441- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062731 ID=TCONS_00062731|Name=TCONS_00062731|organism=Clytia hemisphaerica|type=transcript|length=10921bp|location=Sequence derived from alignment at scaffold_371:313521..324441- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_371:313521..324441- >TCONS_00062731 ID=TCONS_00062731|Name=TCONS_00062731|organism=Clytia hemisphaerica|type=CDS|length=21096bp|location=Sequence derived from alignment at scaffold_371:313521..324441- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062731 vs. Swiss-Prot (Human)
Match: CERK1 (Ceramide kinase OS=Homo sapiens GN=CERK PE=1 SV=1) HSP 1 Score: 328.946 bits (842), Expect = 1.146e-99 Identity = 162/382 (42.41%), Postives = 241/382 (63.09%), Query Frame = 2
Query: 443 FSVHYCRKIKGNKLKHHHVVFQAKESEICKSWVDSIKSTIKRYTSRPEKLLVFINPVGGKKEAEKIFQSKVEPLFYLAKVNYDIVITERMNHAKDYLCEEDISSYDGVISVGGDGMFSEVMNGVLKYEEEQHQIITSSRTNKP--------IIMGIIPAGSTDTVIYCTTGCNDPVTAALQIVLGDELPMDVCSVWHDDDLFKYSISLMAYGYFGDIIRESEKLRWIGPKRYDFAGFKRFMVNKSYEGEVTFRSANPPQIISAQQEQCKQGCKRCSTF---VDDEDTQG-----------EWQTISGRFISVLAANISCRCAKSSTGISPHAHIGDGEIDLILVRKTTRANYLHHLIKISEKTTDNFDFSFIEVHRVKEFRF 1522
F+VH ++ + ++ K V F E ++C W+ +++ +++ TSRP+ LLVFINP GGK + ++I++ KV PLF LA + DI++TE N AK+ L E +I YDG++ VGGDGMFSEV++G++ + + N P + +GIIPAGSTD V Y T G +D T+AL IV+GD L MDV SV H+ L +YS+SL+ YG++GDII++SEK RW+G RYDF+G K F+ + YEG V+F A ++ C+ GC C +++E + EWQ + G+F+++ A N+SC C +S G+SP AH+GDG DLIL+RK +R N+L LI+ + + D FDF+F+EV+RVK+F+F
Sbjct: 84 FTVHCVKRARRHRWKWAQVTFWCPEEQLCHLWLQTLREMLEKLTSRPKHLLVFINPFGGKGQGKRIYERKVAPLFTLASITTDIIVTEHANQAKETLYEINIDKYDGIVCVGGDGMFSEVLHGLIGRTQRSAGV----DQNHPRAVLVPSSLRIGIIPAGSTDCVCYSTVGTSDAETSALHIVVGDSLAMDVSSVHHNSTLLRYSVSLLGYGFYGDIIKDSEKKRWLGLARYDFSGLKTFLSHHCYEGTVSFLPAQHTVGSPRDRKPCRAGCFVCRQSKQQLEEEQKKALYGLEAAEDVEEWQVVCGKFLAINATNMSCACRRSPRGLSPAAHLGDGSSDLILIRKCSRFNFLRFLIRHTNQ-QDQFDFTFVEVYRVKKFQF 460 The following BLAST results are available for this feature:
BLAST of TCONS_00062731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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