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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062727 ID=TCONS_00062727|Name=TCONS_00062727|organism=Clytia hemisphaerica|type=transcript|length=2675bpRun BLAST on NCBI protein sequence of TCONS_00062727-protein >TCONS_00062727-protein ID=TCONS_00062727-protein|Name=TCONS_00062727-protein|organism=Clytia hemisphaerica|type=polypeptide|length=635bp MSSVQEKTKIKEIFSTLAESDASNKQEKEEKDPNIESNVSCNPQSKDLFLRun BLAST on NCBI transcript from alignment at scaffold_371:214567..233210- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062727 ID=TCONS_00062727|Name=TCONS_00062727|organism=Clytia hemisphaerica|type=transcript|length=18644bp|location=Sequence derived from alignment at scaffold_371:214567..233210- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_371:214567..233210- >TCONS_00062727 ID=TCONS_00062727|Name=TCONS_00062727|organism=Clytia hemisphaerica|type=CDS|length=17172bp|location=Sequence derived from alignment at scaffold_371:214567..233210- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062727 vs. Swiss-Prot (Human)
Match: NIPA (Nuclear-interacting partner of ALK OS=Homo sapiens GN=ZC3HC1 PE=1 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.899e-28 Identity = 81/245 (33.06%), Postives = 115/245 (46.94%), Query Frame = 2
Query: 194 TLAESDASNKQEKEEKDPNIESNVSCNPQSKDLFLERVKTFTTTNWAAKPNELSPLKCAQYGWCNEELDQLRCVTCSATIFAGMPDDWDSSAYSDICNEIKDKLKIGHQKLCPWPQNPCPPSFLSLPSRSAQQWKMEIRSAFCGLLELKGNLPELNEDTVASMKSLDNSCIEKLLTNVFRHSCDTDDEVLQAKV---------ACILAVTGWNASQPI--VEDPSITCSLCGKESGLWHYKSLSS 895
T A S + N + E+ P++ES SK+ F RV+TF++ WA KP ELSPL CA+YGW E D L+C +C A + A + +D Y C E+K L H+K C WP +P P F LP E F L L LP L + + +M ++ L TD+ K+ ACIL+V GW S + ++ ITCS C ++ GLW ++ + S
Sbjct: 52 TSATSQSVNGSPQAEQ-PSLEST------SKEAFFSRVETFSSLKWAGKPFELSPLVCAKYGWVTVECDMLKCSSCQAFLCASLQPAFDFDRYKQRCAELKKALCTAHEKFCFWPDSPSPDRFGMLPLDEPAILVSEFLDRFQSLCHLDLQLPSLRPEDLKTMCLTEDKISLLLHLLEDELDHRTDERKTTIKLGSDIQVHVTACILSVCGWACSSSLESMQLSLITCSQCMRKVGLWGFQQIES 289 The following BLAST results are available for this feature:
BLAST of TCONS_00062727 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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